Wall clock time and date at job start Mon Mar 30 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30632 * 1 3 3 Si 1.86801 * 120.00111 * 2 1 4 4 H 1.48499 * 109.47405 * 94.63193 * 3 2 1 5 5 H 1.48495 * 109.47684 * 214.63671 * 3 2 1 6 6 H 1.48509 * 109.46644 * 334.63645 * 3 2 1 7 7 C 1.40315 * 120.00297 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99890 * 1.48813 * 7 2 1 9 9 C 1.40536 * 119.99875 * 181.49517 * 7 2 1 10 10 C 1.44178 * 123.72006 * 33.50058 * 9 7 2 11 11 C 1.32762 * 114.43548 * 180.02562 * 10 9 7 12 12 S 1.75472 * 111.36160 * 0.02562 * 11 10 9 13 13 C 1.39549 * 123.71280 * 213.21399 * 9 7 2 14 14 C 1.46244 * 125.22621 * 359.97438 * 13 9 7 15 15 O 1.21759 * 120.00184 * 124.41631 * 14 13 9 16 16 N 1.34776 * 119.99872 * 304.42233 * 14 13 9 17 17 C 1.46505 * 119.99580 * 188.81165 * 16 14 13 18 18 C 1.52996 * 117.50146 * 16.14205 * 17 16 14 19 19 C 1.52993 * 117.50245 * 307.51776 * 17 16 14 20 20 C 1.46500 * 120.00245 * 8.81456 * 16 14 13 21 21 C 1.52994 * 117.49616 * 318.52631 * 20 16 14 22 22 C 1.53002 * 60.00249 * 252.51244 * 21 20 16 23 23 H 0.97001 * 120.00759 * 359.97438 * 1 2 3 24 24 H 1.08000 * 122.78221 * 0.02562 * 10 9 7 25 25 H 1.08003 * 124.32691 * 179.97438 * 11 10 9 26 26 H 1.09009 * 115.54559 * 161.84445 * 17 16 14 27 27 H 1.09010 * 117.49806 * 359.97438 * 18 17 16 28 28 H 1.08998 * 117.50305 * 145.01308 * 18 17 16 29 29 H 1.08997 * 117.50069 * 214.98137 * 19 17 16 30 30 H 1.09005 * 117.49810 * 0.02562 * 19 17 16 31 31 H 1.08993 * 115.55062 * 104.23770 * 20 16 14 32 32 H 1.09000 * 117.50020 * 359.97438 * 21 20 16 33 33 H 1.08998 * 117.49712 * 145.02303 * 21 20 16 34 34 H 1.09000 * 117.49964 * 252.51517 * 22 21 20 35 35 H 1.09001 * 117.50053 * 107.49011 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 2.5858 1.9899 1.3955 5 1 3.4855 1.4706 -0.7957 6 1 1.3921 2.6790 -0.5998 7 6 2.0080 -1.2151 -0.0005 8 1 1.4683 -2.1502 -0.0253 9 6 3.4130 -1.2152 0.0312 10 6 4.1980 -0.2243 0.7245 11 6 5.5106 -0.4011 0.6330 12 16 5.8994 -1.8184 -0.3258 13 6 4.2019 -2.1778 -0.6000 14 6 3.6936 -3.3097 -1.3742 15 8 4.0568 -3.4723 -2.5249 16 7 2.8231 -4.1727 -0.8139 17 6 2.4627 -5.4078 -1.5145 18 6 3.3620 -5.8532 -2.6693 19 6 1.9717 -5.2837 -2.9581 20 6 2.2373 -3.8756 0.4957 21 6 3.1600 -3.2881 1.5654 22 6 2.6812 -4.7368 1.6799 23 1 -0.4851 0.8400 0.0004 24 1 3.7549 0.5939 1.2727 25 1 6.2455 0.2453 1.0897 26 1 2.0152 -6.1858 -0.8957 27 1 4.2217 -5.2269 -2.9082 28 1 3.5065 -6.9243 -2.8105 29 1 1.2014 -5.9801 -3.2894 30 1 1.9172 -4.2830 -3.3869 31 1 1.2021 -3.5350 0.4812 32 1 4.2029 -3.1230 1.2950 33 1 2.7318 -2.5606 2.2549 34 1 1.9380 -4.9623 2.4446 35 1 3.4090 -5.5244 1.4846 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875920481.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:55 Heat of formation + Delta-G solvation = 81.091027 kcal Electronic energy + Delta-G solvation = -20135.044528 eV Core-core repulsion = 17227.862334 eV Total energy + Delta-G solvation = -2907.182194 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.78520 -37.12433 -36.04585 -35.19924 -33.25605 -31.30741 -29.29562 -26.79323 -22.92980 -22.23455 -21.82293 -21.72748 -21.30435 -19.75059 -18.80684 -16.93760 -16.16567 -15.59382 -15.51764 -14.88836 -14.82842 -13.99735 -13.63992 -13.49516 -13.35478 -12.71219 -12.66198 -12.14513 -11.70488 -11.59910 -11.40636 -11.09052 -11.03893 -10.71698 -10.52051 -10.41637 -10.06189 -9.97262 -9.74159 -9.67113 -9.39621 -9.28458 -8.62330 -7.67017 -7.55301 -7.35618 -7.04087 -4.62188 1.89105 2.66542 2.87879 3.02208 3.10616 3.16896 3.45913 3.78694 3.81212 4.01668 4.38566 4.55488 4.92559 5.32310 5.37254 5.51591 5.57097 5.59054 5.66617 5.72522 5.99123 6.09353 6.12560 6.15964 6.38987 6.51385 6.62655 6.72415 6.81415 6.85136 6.88991 6.92292 7.01527 7.45450 7.59260 8.15996 8.26449 8.32996 8.57949 9.22592 9.92912 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.017160 B = 0.008933 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.324162 B = 3133.753367 C = 3655.584719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.086 3.914 3 Si 0.901 3.099 4 H -0.267 1.267 5 H -0.243 1.243 6 H -0.287 1.287 7 C -0.430 4.430 8 H 0.119 0.881 9 C 0.116 3.884 10 C -0.167 4.167 11 C -0.196 4.196 12 S 0.041 5.959 13 C -0.408 4.408 14 C 0.630 3.370 15 O -0.562 6.562 16 N -0.559 5.559 17 C 0.083 3.917 18 C -0.197 4.197 19 C -0.189 4.189 20 C 0.089 3.911 21 C -0.143 4.143 22 C -0.211 4.211 23 H 0.288 0.712 24 H 0.125 0.875 25 H 0.145 0.855 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.094 -4.310 3.658 6.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.193 1.193 5 H -0.166 1.166 6 H -0.215 1.215 7 C -0.461 4.461 8 H 0.137 0.863 9 C 0.105 3.895 10 C -0.200 4.200 11 C -0.331 4.331 12 S 0.301 5.699 13 C -0.527 4.527 14 C 0.423 3.577 15 O -0.443 6.443 16 N -0.289 5.289 17 C -0.022 4.022 18 C -0.234 4.234 19 C -0.228 4.228 20 C -0.015 4.015 21 C -0.181 4.181 22 C -0.250 4.250 23 H 0.099 0.901 24 H 0.143 0.857 25 H 0.163 0.837 26 H 0.138 0.862 27 H 0.151 0.849 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.376 -4.968 2.622 7.121 hybrid contribution -1.262 1.631 0.553 2.135 sum 3.114 -3.337 3.175 5.560 Atomic orbital electron populations 1.69481 1.07872 1.30513 1.34614 1.26178 0.94869 1.01309 0.91106 0.86591 0.80908 0.80175 0.79476 1.19297 1.16631 1.21452 1.19826 0.89071 0.96110 1.41092 0.86349 1.17892 0.93729 0.89430 0.88450 1.21472 0.93529 1.01605 1.03408 1.25045 0.99198 1.02887 1.05970 1.83168 1.07639 1.24385 1.54715 1.22670 0.93786 1.11216 1.24988 1.16882 0.75967 0.80134 0.84702 1.90541 1.61375 1.75038 1.17394 1.46610 1.44757 1.19170 1.18388 1.21447 1.04027 0.88585 0.88139 1.23753 0.97493 1.00259 1.01894 1.23210 0.97062 1.02944 0.99567 1.21587 0.97701 1.03583 0.78648 1.23469 1.01496 0.93646 0.99473 1.23518 1.04222 0.96044 1.01188 0.90071 0.85746 0.83726 0.86176 0.84889 0.90062 0.89462 0.88335 0.85883 0.86992 0.88010 0.89072 0.89562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.69 13.92 55.57 0.77 -18.92 16 2 C 0.09 2.07 5.52 -17.28 -0.10 1.97 16 3 Si 0.90 19.05 24.47 -169.99 -4.16 14.89 16 4 H -0.27 -5.27 6.64 56.52 0.38 -4.90 16 5 H -0.24 -5.36 6.42 56.52 0.36 -5.00 16 6 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.43 -10.42 7.95 -37.94 -0.30 -10.72 16 8 H 0.12 2.95 3.80 -52.49 -0.20 2.75 16 9 C 0.12 2.68 2.99 -106.21 -0.32 2.36 16 10 C -0.17 -3.51 7.26 -39.13 -0.28 -3.79 16 11 C -0.20 -3.75 11.07 28.86 0.32 -3.43 16 12 S 0.04 0.83 22.69 -107.50 -2.44 -1.61 16 13 C -0.41 -9.42 3.70 -35.88 -0.13 -9.56 16 14 C 0.63 14.81 6.90 -13.04 -0.09 14.72 16 15 O -0.56 -14.22 12.85 5.14 0.07 -14.15 16 16 N -0.56 -11.44 3.15 -160.26 -0.51 -11.95 16 17 C 0.08 1.47 6.64 -67.93 -0.45 1.02 16 18 C -0.20 -3.43 9.62 -26.74 -0.26 -3.69 16 19 C -0.19 -3.33 9.87 -26.74 -0.26 -3.59 16 20 C 0.09 1.68 3.79 -67.93 -0.26 1.42 16 21 C -0.14 -2.64 6.58 -26.73 -0.18 -2.81 16 22 C -0.21 -3.33 10.45 -26.73 -0.28 -3.60 16 23 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 24 H 0.13 2.52 4.37 -52.49 -0.23 2.29 16 25 H 0.15 2.26 8.06 -52.48 -0.42 1.84 16 26 H 0.12 1.80 8.14 -51.92 -0.42 1.37 16 27 H 0.13 2.75 5.30 -51.95 -0.28 2.48 16 28 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 30 H 0.10 2.04 7.52 -51.93 -0.39 1.65 16 31 H 0.12 2.48 6.42 -51.93 -0.33 2.14 16 32 H 0.11 2.22 5.38 -51.93 -0.28 1.95 16 33 H 0.10 1.88 7.94 -51.93 -0.41 1.47 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 287.38 15.07 4.33 4.33 Total: -1.00 -26.79 287.38 -8.38 -35.17 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -3.86 Total: 11.92 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.59 Total: -19.69 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.27 Total: -30.86 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.07 Total: -14.15 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.16 Total: 14.89 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.44 Total: -1.61 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.79 -8.38 -35.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875920481.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.261 kcal (2) G-P(sol) polarization free energy of solvation -26.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds