Wall clock time and date at job start Mon Mar 30 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86802 * 119.99911 * 2 1 4 4 H 1.48502 * 109.46736 * 92.11328 * 3 2 1 5 5 H 1.48500 * 109.46935 * 212.11318 * 3 2 1 6 6 H 1.48495 * 109.47113 * 332.11636 * 3 2 1 7 7 C 1.40307 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99905 * 9.09405 * 7 2 1 9 9 C 1.40533 * 119.99897 * 189.10145 * 7 2 1 10 10 C 1.44177 * 123.71877 * 29.73263 * 9 7 2 11 11 C 1.32763 * 114.43357 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36415 * 0.02562 * 11 10 9 13 13 C 1.39556 * 123.71141 * 209.44025 * 9 7 2 14 14 C 1.46230 * 125.22571 * 0.02562 * 13 9 7 15 15 O 1.21762 * 120.00554 * 359.97438 * 14 13 9 16 16 N 1.34784 * 119.99847 * 179.97438 * 14 13 9 17 17 C 1.46495 * 120.00142 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47266 * 180.02562 * 17 16 14 19 19 H 1.08998 * 110.34707 * 305.70237 * 18 17 16 20 20 C 1.51100 * 110.38807 * 67.98975 * 18 17 16 21 21 C 1.30528 * 111.10887 * 135.25063 * 20 18 17 22 22 C 1.51106 * 111.10142 * 359.97438 * 21 20 18 23 23 C 1.54633 * 110.38898 * 183.41448 * 18 17 16 24 24 H 0.97003 * 120.00018 * 0.02562 * 1 2 3 25 25 H 1.08003 * 122.78746 * 359.93624 * 10 9 7 26 26 H 1.08007 * 124.32274 * 179.97438 * 11 10 9 27 27 H 0.96996 * 119.99542 * 359.97438 * 16 14 13 28 28 H 1.09000 * 109.47207 * 300.00247 * 17 16 14 29 29 H 1.09001 * 109.47104 * 59.99771 * 17 16 14 30 30 H 1.08004 * 124.44988 * 315.22632 * 20 18 17 31 31 H 1.07998 * 124.44800 * 180.02562 * 21 20 18 32 32 H 1.09002 * 110.38108 * 102.37744 * 22 21 20 33 33 H 1.08999 * 110.38442 * 224.64105 * 22 21 20 34 34 H 1.08998 * 111.03906 * 334.58323 * 23 18 17 35 35 H 1.08998 * 111.03945 * 98.52612 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.5326 2.0206 1.3992 5 1 3.5149 1.4535 -0.7443 6 1 1.4162 2.6652 -0.6548 7 6 2.0080 -1.2151 -0.0005 8 1 1.4782 -2.1444 -0.1488 9 6 3.4001 -1.2228 0.1920 10 6 4.1057 -0.2365 0.9717 11 6 5.4190 -0.4209 1.0319 12 16 5.9075 -1.8404 0.1233 13 6 4.2510 -2.1894 -0.3457 14 6 3.8289 -3.3175 -1.1749 15 8 2.6511 -3.4678 -1.4447 16 7 4.7436 -4.1910 -1.6407 17 6 4.3208 -5.3215 -2.4709 18 6 5.5443 -6.1521 -2.8630 19 1 6.2954 -5.5202 -3.3368 20 6 6.1247 -6.8396 -1.6491 21 6 6.4141 -8.0858 -1.9081 22 6 6.0743 -8.4373 -3.3379 23 6 5.1330 -7.3028 -3.8105 24 1 -0.4850 0.8401 -0.0004 25 1 3.6073 0.5848 1.4653 26 1 6.1001 0.2213 1.5707 27 1 5.6819 -4.0710 -1.4261 28 1 3.6241 -5.9440 -1.9095 29 1 3.8309 -4.9485 -3.3704 30 1 6.2802 -6.3625 -0.6927 31 1 6.8396 -8.7753 -1.1941 32 1 6.9769 -8.4580 -3.9485 33 1 5.5651 -9.4001 -3.3814 34 1 4.0881 -7.5760 -3.6639 35 1 5.3250 -7.0406 -4.8509 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881501197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:10 Heat of formation + Delta-G solvation = -3.529988 kcal Electronic energy + Delta-G solvation = -18540.680912 eV Core-core repulsion = 15629.829275 eV Total energy + Delta-G solvation = -2910.851637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.16243 -37.93962 -36.20708 -33.64404 -33.29819 -29.92575 -29.14953 -28.75482 -26.53940 -23.88881 -21.91526 -20.72914 -20.29621 -18.88497 -18.62304 -17.72265 -16.12871 -15.84406 -15.60065 -15.29920 -14.52144 -14.19501 -14.07592 -13.64119 -13.20909 -12.84000 -12.26473 -12.12845 -11.94842 -11.84086 -11.75536 -11.56371 -11.44906 -11.29768 -11.06566 -10.87358 -10.72652 -10.39809 -10.03493 -9.64738 -9.43132 -8.93664 -8.50910 -8.22221 -7.65691 -7.37310 -7.10431 -4.55435 1.86007 2.25213 2.80165 2.87839 3.06255 3.09793 3.43678 3.49797 3.78728 4.09551 4.41898 4.58396 4.66136 4.92919 5.11226 5.22258 5.40128 5.49940 5.54060 5.68808 5.73501 5.80304 5.97873 6.02815 6.09123 6.20546 6.33771 6.50339 6.65388 6.82584 6.86629 6.87584 7.13036 7.34455 7.64196 8.27743 8.39217 8.52829 8.77568 9.57360 9.87321 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.004653 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.059178 B = 6016.559913 C = 6775.471215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.242 1.242 6 H -0.284 1.284 7 C -0.362 4.362 8 H 0.120 0.880 9 C 0.109 3.891 10 C -0.167 4.167 11 C -0.178 4.178 12 S -0.019 6.019 13 C -0.420 4.420 14 C 0.597 3.403 15 O -0.554 6.554 16 N -0.750 5.750 17 C 0.138 3.862 18 C -0.081 4.081 19 H 0.086 0.914 20 C -0.150 4.150 21 C -0.177 4.177 22 C -0.099 4.099 23 C -0.118 4.118 24 H 0.291 0.709 25 H 0.128 0.872 26 H 0.144 0.856 27 H 0.388 0.612 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.021 -7.113 -3.109 13.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.147 4.147 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.165 1.165 6 H -0.210 1.210 7 C -0.393 4.393 8 H 0.137 0.863 9 C 0.098 3.902 10 C -0.200 4.200 11 C -0.313 4.313 12 S 0.238 5.762 13 C -0.539 4.539 14 C 0.393 3.607 15 O -0.435 6.435 16 N -0.404 5.404 17 C 0.014 3.986 18 C -0.100 4.100 19 H 0.104 0.896 20 C -0.168 4.168 21 C -0.195 4.195 22 C -0.136 4.136 23 C -0.156 4.156 24 H 0.102 0.898 25 H 0.145 0.855 26 H 0.162 0.838 27 H 0.221 0.779 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.247 -7.835 -3.617 14.177 hybrid contribution -0.499 1.573 0.631 1.766 sum 10.748 -6.263 -2.987 12.793 Atomic orbital electron populations 1.69555 1.08259 1.30888 1.31350 1.26482 0.94971 1.01984 0.91278 0.86437 0.81060 0.79363 0.79407 1.19089 1.16516 1.21041 1.19732 0.89848 0.96289 1.33402 0.86283 1.17927 0.93457 0.89223 0.89633 1.21564 0.94140 1.01517 1.02804 1.24930 0.98678 1.02129 1.05519 1.82787 1.11840 1.25920 1.55624 1.22573 0.92365 1.12679 1.26291 1.16790 0.84716 0.80611 0.78597 1.90723 1.17163 1.75065 1.60583 1.45824 1.10147 1.28503 1.55940 1.21097 0.95119 0.87493 0.94906 1.21315 0.97377 0.96823 0.94482 0.89643 1.23338 0.98883 0.95955 0.98607 1.23230 1.02079 0.97073 0.97154 1.21368 0.99145 0.98875 0.94180 1.22496 1.00043 0.94225 0.98802 0.89764 0.85510 0.83802 0.77861 0.92196 0.92188 0.85728 0.86072 0.90992 0.91345 0.90590 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.36 13.92 55.57 0.77 -19.59 16 2 C 0.08 1.96 5.52 -17.28 -0.10 1.87 16 3 Si 0.91 19.61 24.48 -169.99 -4.16 15.45 16 4 H -0.26 -5.29 6.52 56.52 0.37 -4.93 16 5 H -0.24 -5.35 6.67 56.52 0.38 -4.97 16 6 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.36 -10.14 8.92 -37.94 -0.34 -10.48 16 8 H 0.12 3.74 6.49 -52.49 -0.34 3.40 16 9 C 0.11 2.81 5.24 -106.21 -0.56 2.26 16 10 C -0.17 -3.77 7.43 -39.13 -0.29 -4.06 16 11 C -0.18 -3.53 11.07 28.86 0.32 -3.21 16 12 S -0.02 -0.37 22.25 -107.50 -2.39 -2.77 16 13 C -0.42 -10.34 6.51 -35.88 -0.23 -10.57 16 14 C 0.60 14.64 7.76 -13.05 -0.10 14.54 16 15 O -0.55 -15.61 14.55 5.13 0.07 -15.54 16 16 N -0.75 -14.40 5.40 -61.76 -0.33 -14.73 16 17 C 0.14 2.27 5.00 -4.05 -0.02 2.25 16 18 C -0.08 -1.02 2.95 -90.72 -0.27 -1.29 16 19 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.15 -1.83 9.81 -35.70 -0.35 -2.18 16 21 C -0.18 -1.89 10.78 -35.70 -0.38 -2.27 16 22 C -0.10 -0.93 6.81 -26.73 -0.18 -1.11 16 23 C -0.12 -1.23 6.72 -24.92 -0.17 -1.40 16 24 H 0.29 6.76 8.29 -40.82 -0.34 6.43 16 25 H 0.13 2.71 4.41 -52.48 -0.23 2.48 16 26 H 0.14 2.31 8.06 -52.48 -0.42 1.88 16 27 H 0.39 6.67 7.43 -40.82 -0.30 6.37 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.81 7.91 -51.93 -0.41 0.40 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 302.97 15.07 4.57 4.57 Total: -1.00 -29.96 302.97 -8.43 -38.39 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.28 Total: 9.87 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.67 Total: -15.66 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.44 Total: -34.32 kcal Atomic # 8 Polarization: -15.61 SS G_CDS: 0.07 Total: -15.54 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.16 Total: 15.45 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -2.39 Total: -2.77 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.96 -8.43 -38.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881501197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.858 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds