Wall clock time and date at job start Mon Mar 30 2020 01:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30645 * 1 3 3 Si 1.86802 * 119.99911 * 2 1 4 4 H 1.48502 * 109.46736 * 92.11328 * 3 2 1 5 5 H 1.48500 * 109.46935 * 212.11318 * 3 2 1 6 6 H 1.48495 * 109.47113 * 332.11636 * 3 2 1 7 7 C 1.40307 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99905 * 9.09405 * 7 2 1 9 9 C 1.40533 * 119.99897 * 189.10145 * 7 2 1 10 10 C 1.44177 * 123.71877 * 29.73263 * 9 7 2 11 11 C 1.32763 * 114.43357 * 179.97438 * 10 9 7 12 12 S 1.75475 * 111.36415 * 0.02562 * 11 10 9 13 13 C 1.39556 * 123.71141 * 209.44025 * 9 7 2 14 14 C 1.46230 * 125.22571 * 0.02562 * 13 9 7 15 15 O 1.21762 * 120.00554 * 359.97438 * 14 13 9 16 16 N 1.34784 * 119.99847 * 179.97438 * 14 13 9 17 17 C 1.46495 * 120.00142 * 179.97438 * 16 14 13 18 18 C 1.52993 * 109.47266 * 180.02562 * 17 16 14 19 19 H 1.08998 * 110.34707 * 305.70237 * 18 17 16 20 20 C 1.51100 * 110.38807 * 67.98975 * 18 17 16 21 21 C 1.30528 * 111.10887 * 135.25063 * 20 18 17 22 22 C 1.51106 * 111.10142 * 359.97438 * 21 20 18 23 23 C 1.54633 * 110.38898 * 183.41448 * 18 17 16 24 24 H 0.97003 * 120.00018 * 0.02562 * 1 2 3 25 25 H 1.08003 * 122.78746 * 359.93624 * 10 9 7 26 26 H 1.08007 * 124.32274 * 179.97438 * 11 10 9 27 27 H 0.96996 * 119.99542 * 359.97438 * 16 14 13 28 28 H 1.09000 * 109.47207 * 300.00247 * 17 16 14 29 29 H 1.09001 * 109.47104 * 59.99771 * 17 16 14 30 30 H 1.08004 * 124.44988 * 315.22632 * 20 18 17 31 31 H 1.07998 * 124.44800 * 180.02562 * 21 20 18 32 32 H 1.09002 * 110.38108 * 102.37744 * 22 21 20 33 33 H 1.08999 * 110.38442 * 224.64105 * 22 21 20 34 34 H 1.08998 * 111.03906 * 334.58323 * 23 18 17 35 35 H 1.08998 * 111.03945 * 98.52612 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.5326 2.0206 1.3992 5 1 3.5149 1.4535 -0.7443 6 1 1.4162 2.6652 -0.6548 7 6 2.0080 -1.2151 -0.0005 8 1 1.4782 -2.1444 -0.1488 9 6 3.4001 -1.2228 0.1920 10 6 4.1057 -0.2365 0.9717 11 6 5.4190 -0.4209 1.0319 12 16 5.9075 -1.8404 0.1233 13 6 4.2510 -2.1894 -0.3457 14 6 3.8289 -3.3175 -1.1749 15 8 2.6511 -3.4678 -1.4447 16 7 4.7436 -4.1910 -1.6407 17 6 4.3208 -5.3215 -2.4709 18 6 5.5443 -6.1521 -2.8630 19 1 6.2954 -5.5202 -3.3368 20 6 6.1247 -6.8396 -1.6491 21 6 6.4141 -8.0858 -1.9081 22 6 6.0743 -8.4373 -3.3379 23 6 5.1330 -7.3028 -3.8105 24 1 -0.4850 0.8401 -0.0004 25 1 3.6073 0.5848 1.4653 26 1 6.1001 0.2213 1.5707 27 1 5.6819 -4.0710 -1.4261 28 1 3.6241 -5.9440 -1.9095 29 1 3.8309 -4.9485 -3.3704 30 1 6.2802 -6.3625 -0.6927 31 1 6.8396 -8.7753 -1.1941 32 1 6.9769 -8.4580 -3.9485 33 1 5.5651 -9.4001 -3.3814 34 1 4.0881 -7.5760 -3.6639 35 1 5.3250 -7.0406 -4.8509 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881501197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:10 Heat of formation + Delta-G solvation = -23.373040 kcal Electronic energy + Delta-G solvation = -18541.541371 eV Core-core repulsion = 15629.829275 eV Total energy + Delta-G solvation = -2911.712096 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.54340 -39.44066 -37.99112 -35.33204 -35.18045 -31.43106 -30.66954 -29.76052 -28.29042 -25.25402 -23.64129 -22.17486 -21.58975 -20.74066 -19.66048 -19.35786 -17.78799 -17.37116 -16.97449 -16.62857 -16.22409 -15.83963 -15.44174 -15.30484 -14.94814 -14.32952 -14.08911 -13.80790 -13.35035 -13.10599 -12.98898 -12.82330 -12.77011 -12.60590 -12.27410 -12.11731 -12.10258 -11.86979 -11.79873 -11.40401 -11.17927 -10.49398 -9.99695 -9.81891 -9.45570 -9.10991 -8.99355 -6.54030 0.08153 1.15215 1.18263 1.34202 1.35799 1.43603 1.57716 1.69568 2.05961 2.47545 2.52493 3.14930 3.66479 3.70843 3.93326 4.21565 4.30035 4.34465 4.42797 4.55074 4.60986 4.68228 4.84467 4.95085 4.96500 5.01913 5.07199 5.16747 5.21320 5.31841 5.36044 5.61265 5.69793 5.78252 5.97341 6.21364 6.47018 6.59905 6.90362 7.67903 8.05629 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.004653 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.059178 B = 6016.559913 C = 6775.471215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.036 3.964 3 Si 0.976 3.024 4 H -0.232 1.232 5 H -0.248 1.248 6 H -0.272 1.272 7 C -0.413 4.413 8 H 0.059 0.941 9 C 0.098 3.902 10 C -0.201 4.201 11 C -0.153 4.153 12 S 0.056 5.944 13 C -0.453 4.453 14 C 0.585 3.415 15 O -0.603 6.603 16 N -0.731 5.731 17 C 0.137 3.863 18 C -0.071 4.071 19 H 0.094 0.906 20 C -0.182 4.182 21 C -0.159 4.159 22 C -0.097 4.097 23 C -0.118 4.118 24 H 0.302 0.698 25 H 0.141 0.859 26 H 0.197 0.803 27 H 0.401 0.599 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.098 -6.598 -2.908 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.182 4.182 3 Si 0.796 3.204 4 H -0.156 1.156 5 H -0.171 1.171 6 H -0.198 1.198 7 C -0.444 4.444 8 H 0.078 0.922 9 C 0.086 3.914 10 C -0.234 4.234 11 C -0.288 4.288 12 S 0.314 5.686 13 C -0.572 4.572 14 C 0.380 3.620 15 O -0.488 6.488 16 N -0.384 5.384 17 C 0.014 3.986 18 C -0.090 4.090 19 H 0.112 0.888 20 C -0.200 4.200 21 C -0.177 4.177 22 C -0.134 4.134 23 C -0.156 4.156 24 H 0.113 0.887 25 H 0.158 0.842 26 H 0.214 0.786 27 H 0.236 0.764 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.157 0.843 32 H 0.109 0.891 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.372 -7.368 -3.414 17.385 hybrid contribution -1.596 1.155 0.517 2.037 sum 13.776 -6.212 -2.897 15.387 Atomic orbital electron populations 1.69596 1.09756 1.32465 1.33231 1.27352 0.95731 1.05064 0.90091 0.85482 0.79184 0.74586 0.81130 1.15597 1.17130 1.19801 1.19507 0.91463 0.95304 1.38153 0.92241 1.18270 0.92980 0.90761 0.89386 1.21491 0.95142 1.02315 1.04431 1.25595 0.98407 1.01466 1.03333 1.82427 1.06782 1.25285 1.54084 1.23150 0.96209 1.12152 1.25697 1.17173 0.84670 0.81472 0.78674 1.90703 1.19484 1.76403 1.62255 1.45645 1.09945 1.27913 1.54873 1.21251 0.97131 0.86717 0.93544 1.21265 0.95338 0.96955 0.95427 0.88820 1.23285 1.01455 0.96945 0.98304 1.23546 0.99724 0.96382 0.98064 1.21425 0.99670 0.98854 0.93425 1.22548 1.00039 0.93763 0.99239 0.88665 0.84171 0.78554 0.76371 0.93957 0.93272 0.86631 0.84345 0.89121 0.89916 0.91353 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.90 13.92 21.89 0.30 -45.60 16 2 C 0.04 1.93 5.52 85.37 0.47 2.40 16 3 Si 0.98 40.19 24.48 68.60 1.68 41.86 16 4 H -0.23 -8.26 6.52 99.48 0.65 -7.61 16 5 H -0.25 -10.33 6.67 99.48 0.66 -9.67 16 6 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.41 -24.81 8.92 23.33 0.21 -24.60 16 8 H 0.06 4.16 6.49 -2.91 -0.02 4.14 16 9 C 0.10 5.17 5.24 -20.89 -0.11 5.06 16 10 C -0.20 -8.64 7.43 22.60 0.17 -8.47 16 11 C -0.15 -5.39 11.07 66.64 0.74 -4.65 16 12 S 0.06 2.06 22.25 -56.49 -1.26 0.80 16 13 C -0.45 -22.56 6.51 24.67 0.16 -22.40 16 14 C 0.58 29.96 7.76 86.32 0.67 30.63 16 15 O -0.60 -36.79 14.55 -4.55 -0.07 -36.85 16 16 N -0.73 -28.57 5.40 -467.49 -2.52 -31.09 16 17 C 0.14 4.65 5.00 86.38 0.43 5.09 16 18 C -0.07 -1.71 2.95 -10.86 -0.03 -1.74 16 19 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 20 C -0.18 -4.20 9.81 26.26 0.26 -3.95 16 21 C -0.16 -2.99 10.78 26.26 0.28 -2.70 16 22 C -0.10 -1.53 6.81 30.59 0.21 -1.32 16 23 C -0.12 -2.26 6.72 31.77 0.21 -2.04 16 24 H 0.30 14.69 8.29 -92.71 -0.77 13.92 16 25 H 0.14 5.58 4.41 -2.91 -0.01 5.57 16 26 H 0.20 4.87 8.06 -2.91 -0.02 4.85 16 27 H 0.40 13.47 7.43 -92.71 -0.69 12.78 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 31 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.41 7.91 -2.39 -0.02 1.40 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.19 302.97 2.13 -70.06 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.32 Total: 29.52 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.67 Total: -28.70 kcal Atomic # 7 Polarization: -74.47 SS G_CDS: -2.22 Total: -76.69 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.07 Total: -36.85 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.68 Total: 41.86 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.26 Total: 0.80 kcal Total: -72.19 2.13 -70.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881501197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.685 kcal (2) G-P(sol) polarization free energy of solvation -72.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds