Wall clock time and date at job start Mon Mar 30 2020 01:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99983 * 2 1 4 4 H 1.48505 * 109.47128 * 239.99422 * 3 2 1 5 5 H 1.48500 * 109.47438 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46928 * 119.99832 * 3 2 1 7 7 C 1.38893 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99903 * 171.48715 * 7 2 1 9 9 N 1.37206 * 120.00221 * 351.49141 * 7 2 1 10 10 C 1.34775 * 120.00069 * 186.27223 * 9 7 2 11 11 O 1.21277 * 119.99901 * 175.28536 * 10 9 7 12 12 C 1.50698 * 120.00231 * 355.28913 * 10 9 7 13 13 H 1.08998 * 110.50501 * 38.70811 * 12 10 9 14 14 C 1.54096 * 110.56230 * 275.81058 * 12 10 9 15 15 O 1.45705 * 104.00382 * 241.42417 * 14 12 10 16 16 C 1.33767 * 109.48176 * 359.97438 * 15 14 12 17 17 O 1.21507 * 123.07488 * 180.02562 * 16 15 14 18 18 N 1.34005 * 113.85607 * 0.02562 * 16 15 14 19 19 C 1.39429 * 120.00101 * 6.27351 * 9 7 2 20 20 C 1.39070 * 119.69380 * 91.38999 * 19 9 7 21 21 C 1.38386 * 119.09715 * 179.97438 * 20 19 9 22 22 C 1.38827 * 118.48987 * 0.02562 * 21 20 19 23 23 C 1.38152 * 119.31174 * 359.97438 * 22 21 20 24 24 N 1.31871 * 120.85267 * 359.74873 * 23 22 21 25 25 H 0.97002 * 120.00152 * 0.02562 * 1 2 3 26 26 H 1.09000 * 110.52228 * 122.79669 * 14 12 10 27 27 H 1.08997 * 110.52276 * 0.05272 * 14 12 10 28 28 H 0.96995 * 125.56684 * 179.97438 * 18 16 15 29 29 H 1.08002 * 120.45479 * 359.96015 * 20 19 9 30 30 H 1.07996 * 120.75324 * 179.97438 * 21 20 19 31 31 H 1.07995 * 120.34450 * 180.02562 * 22 21 20 32 32 H 1.08003 * 119.56970 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0086 -1.2029 0.0005 8 1 3.0797 -1.2081 -0.1379 9 7 1.3339 -2.3845 0.1769 10 6 2.0180 -3.5387 0.3040 11 8 1.4276 -4.5702 0.5451 12 6 3.5168 -3.5475 0.1467 13 1 3.9533 -2.6564 0.5977 14 6 3.9042 -3.6501 -1.3412 15 8 4.6490 -4.8994 -1.4263 16 6 4.7116 -5.4649 -0.2157 17 8 5.2783 -6.5188 -0.0045 18 7 4.0922 -4.7628 0.7431 19 6 -0.0596 -2.3913 0.2245 20 6 -0.7880 -2.5793 -0.9452 21 6 -2.1705 -2.5844 -0.8836 22 6 -2.7790 -2.3999 0.3505 23 6 -1.9929 -2.2186 1.4719 24 7 -0.6771 -2.2240 1.3835 25 1 -0.4850 0.8400 -0.0004 26 1 4.5342 -2.8091 -1.6309 27 1 3.0122 -3.6937 -1.9662 28 1 4.0327 -5.0149 1.6778 29 1 -0.2817 -2.7193 -1.8888 30 1 -2.7625 -2.7277 -1.7754 31 1 -3.8558 -2.3988 0.4331 32 1 -2.4619 -2.0751 2.4342 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892473102.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:08 Heat of formation + Delta-G solvation = -64.103807 kcal Electronic energy + Delta-G solvation = -21758.655768 eV Core-core repulsion = 18298.884239 eV Total energy + Delta-G solvation = -3459.771529 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.81779 -41.29864 -39.61305 -38.25946 -36.86965 -35.64413 -33.66229 -32.98189 -31.64212 -30.19238 -27.02448 -25.94146 -24.10462 -23.71303 -23.44613 -21.40175 -20.13017 -19.11860 -18.90038 -17.81813 -17.25011 -17.19825 -17.02712 -16.57332 -16.06052 -15.92261 -15.37058 -15.26042 -14.98709 -14.72740 -14.47260 -14.09533 -13.80401 -13.36023 -13.31132 -12.86933 -12.75302 -12.38458 -12.18067 -11.97884 -11.84185 -11.57577 -11.25757 -10.49668 -10.35081 -10.13976 -9.79845 -9.66698 -8.18537 -6.02229 0.61309 0.79071 1.35555 1.45226 1.53745 1.60843 1.68044 1.74688 2.16396 2.42873 2.73586 3.07626 3.25677 3.31986 3.70548 3.89500 4.04805 4.21163 4.22346 4.49882 4.51464 4.53644 4.60277 4.76798 5.06636 5.35690 5.43096 5.50309 5.63320 5.68636 6.04388 6.12250 6.40910 6.92883 7.00958 7.31398 7.53001 7.75110 8.67037 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.007488 C = 0.005695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.219100 B = 3738.324092 C = 4915.713475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C -0.001 4.001 3 Si 0.997 3.003 4 H -0.251 1.251 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.364 4.364 8 H 0.142 0.858 9 N -0.404 5.404 10 C 0.445 3.555 11 O -0.620 6.620 12 C 0.101 3.899 13 H 0.155 0.845 14 C 0.062 3.938 15 O -0.335 6.335 16 C 0.651 3.349 17 O -0.571 6.571 18 N -0.699 5.699 19 C 0.431 3.569 20 C -0.173 4.173 21 C -0.071 4.071 22 C -0.197 4.197 23 C 0.097 3.903 24 N -0.521 5.521 25 H 0.270 0.730 26 H 0.164 0.836 27 H 0.105 0.895 28 H 0.441 0.559 29 H 0.113 0.887 30 H 0.154 0.846 31 H 0.159 0.841 32 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 3.353 -2.588 4.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.205 4.205 3 Si 0.821 3.179 4 H -0.175 1.175 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.159 0.841 9 N -0.121 5.121 10 C 0.234 3.766 11 O -0.507 6.507 12 C -0.008 4.008 13 H 0.173 0.827 14 C -0.012 4.012 15 O -0.244 6.244 16 C 0.404 3.596 17 O -0.460 6.460 18 N -0.370 5.370 19 C 0.205 3.795 20 C -0.196 4.196 21 C -0.097 4.097 22 C -0.217 4.217 23 C -0.061 4.061 24 N -0.234 5.234 25 H 0.081 0.919 26 H 0.182 0.818 27 H 0.123 0.877 28 H 0.284 0.716 29 H 0.132 0.868 30 H 0.172 0.828 31 H 0.177 0.823 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.886 2.584 -2.032 3.404 hybrid contribution -0.726 0.845 -0.011 1.114 sum 0.160 3.429 -2.043 3.994 Atomic orbital electron populations 1.69682 1.07344 1.28066 1.46141 1.26159 0.96285 1.03080 0.94974 0.84901 0.77533 0.75801 0.79698 1.17499 1.22309 1.19376 1.20330 0.94581 0.81610 1.52372 0.84083 1.41496 1.02396 1.07445 1.60772 1.20623 0.90095 0.82871 0.83044 1.90618 1.71038 1.33744 1.55251 1.22255 0.91017 0.91032 0.96490 0.82741 1.24551 0.98291 0.84973 0.93408 1.87203 1.70606 1.38137 1.28475 1.18462 0.78189 0.82854 0.80088 1.90994 1.50643 1.22125 1.82204 1.45668 1.55405 1.23812 1.12067 1.17696 0.84521 0.88527 0.88734 1.21730 0.95758 1.04313 0.97767 1.21564 0.93296 0.95849 0.99040 1.22132 1.01867 1.04549 0.93105 1.22689 0.88247 0.95596 0.99572 1.67049 1.12754 1.13780 1.29790 0.91890 0.81826 0.87703 0.71556 0.86847 0.82802 0.82324 0.82221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -41.68 9.81 21.65 0.21 -41.47 16 2 C 0.00 -0.04 5.43 84.91 0.46 0.42 16 3 Si 1.00 34.34 29.56 68.60 2.03 36.37 16 4 H -0.25 -7.83 7.11 99.48 0.71 -7.12 16 5 H -0.30 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -9.12 7.11 99.48 0.71 -8.42 16 7 C -0.36 -15.18 9.28 84.01 0.78 -14.40 16 8 H 0.14 4.73 5.91 -2.91 -0.02 4.72 16 9 N -0.40 -18.23 2.74 -464.37 -1.27 -19.50 16 10 C 0.45 18.99 6.69 87.66 0.59 19.58 16 11 O -0.62 -31.43 16.58 -3.02 -0.05 -31.48 16 12 C 0.10 3.16 3.20 44.50 0.14 3.30 16 13 H 0.16 3.98 6.63 -2.39 -0.02 3.97 16 14 C 0.06 1.64 7.83 72.35 0.57 2.21 16 15 O -0.33 -10.92 11.09 -47.28 -0.52 -11.45 16 16 C 0.65 23.80 9.16 129.91 1.19 24.99 16 17 O -0.57 -24.52 18.04 19.66 0.35 -24.17 16 18 N -0.70 -22.77 5.66 -573.42 -3.24 -26.01 16 19 C 0.43 20.52 2.92 132.90 0.39 20.91 16 20 C -0.17 -7.46 9.39 22.51 0.21 -7.25 16 21 C -0.07 -2.54 10.17 22.45 0.23 -2.31 16 22 C -0.20 -6.62 10.11 22.39 0.23 -6.39 16 23 C 0.10 3.82 11.18 84.67 0.95 4.77 16 24 N -0.52 -25.06 9.78 -192.95 -1.89 -26.95 16 25 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 26 H 0.16 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.10 2.90 7.72 -2.39 -0.02 2.88 16 28 H 0.44 13.34 8.96 -92.71 -0.83 12.51 16 29 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 30 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 32 H 0.16 5.20 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -69.61 287.84 1.70 -67.91 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.35 Total: 30.90 kcal Atomic # 6 Polarization: 40.11 SS G_CDS: 5.73 Total: 45.84 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -6.19 Total: -113.92 kcal Atomic # 8 Polarization: -66.88 SS G_CDS: -0.22 Total: -67.10 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Total: -69.61 1.70 -67.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892473102.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.806 kcal (2) G-P(sol) polarization free energy of solvation -69.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds