Wall clock time and date at job start Mon Mar 30 2020 02:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47335 * 2 1 4 4 C 1.36934 * 120.00149 * 269.53370 * 3 2 1 5 5 H 1.07995 * 119.99904 * 325.97968 * 4 3 2 6 6 C 1.38819 * 120.00018 * 145.98360 * 4 3 2 7 7 N 1.31619 * 120.00007 * 336.70905 * 6 4 3 8 8 Si 1.86793 * 119.99922 * 156.70735 * 6 4 3 9 9 H 1.48499 * 109.47369 * 59.99893 * 8 6 4 10 10 H 1.48502 * 109.47211 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47403 * 300.00276 * 8 6 4 12 12 C 1.46499 * 119.99694 * 89.53016 * 3 2 1 13 13 C 1.50702 * 109.47202 * 90.00300 * 12 3 2 14 14 C 1.31784 * 124.30527 * 89.99963 * 13 12 3 15 15 C 1.45397 * 114.88974 * 180.02562 * 14 13 12 16 16 C 1.39641 * 111.86408 * 359.97438 * 15 14 13 17 17 C 1.39915 * 119.87514 * 180.02562 * 16 15 14 18 18 C 1.37473 * 120.43259 * 0.02562 * 17 16 15 19 19 C 1.38758 * 120.24286 * 359.97438 * 18 17 16 20 20 C 1.37645 * 120.37764 * 359.97438 * 19 18 17 21 21 O 1.35877 * 119.88119 * 180.02562 * 20 19 18 22 22 S 1.75293 * 124.30369 * 270.02558 * 13 12 3 23 23 H 1.08998 * 109.47277 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47260 * 299.99714 * 1 2 3 25 25 H 1.09004 * 109.47126 * 59.99677 * 1 2 3 26 26 H 1.09006 * 109.46750 * 240.00153 * 2 1 3 27 27 H 1.08994 * 109.47171 * 120.00095 * 2 1 3 28 28 H 0.97003 * 119.99922 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47483 * 330.00174 * 12 3 2 30 30 H 1.09004 * 109.47085 * 210.00014 * 12 3 2 31 31 H 1.08004 * 122.55420 * 359.74931 * 14 13 12 32 32 H 1.08003 * 119.78547 * 180.02562 * 17 16 15 33 33 H 1.07999 * 119.87792 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.81120 * 179.97438 * 19 18 17 35 35 H 0.96701 * 113.99957 * 269.97992 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2557 2.0235 -1.1858 5 1 2.6218 1.4684 -2.0368 6 6 2.0258 3.3882 -1.2941 7 7 1.1832 3.9807 -0.4748 8 14 2.9124 4.3837 -2.6026 9 1 2.5672 3.8541 -3.9463 10 1 2.4965 5.8062 -2.5089 11 1 4.3791 4.2825 -2.3926 12 6 2.2527 2.0752 1.2687 13 6 3.6726 1.8396 1.7154 14 6 4.6909 2.6108 1.3913 15 6 5.9728 2.1924 1.9349 16 6 5.8575 1.0339 2.7059 17 6 6.9927 0.4836 3.3111 18 6 8.2229 1.0764 3.1524 19 6 8.3505 2.2278 2.3887 20 6 7.2483 2.7870 1.7828 21 8 7.3850 3.9144 1.0368 22 16 4.1799 0.5044 2.7316 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 1.0229 4.9344 -0.5503 29 1 1.5661 1.6931 2.0242 30 1 2.0868 3.1441 1.1342 31 1 4.5821 3.4845 0.7657 32 1 6.9019 -0.4127 3.9068 33 1 9.0933 0.6438 3.6232 34 1 9.3202 2.6880 2.2691 35 1 7.2794 4.7337 1.5393 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893969799.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:21 Heat of formation + Delta-G solvation = 17.465556 kcal Electronic energy + Delta-G solvation = -19053.044723 eV Core-core repulsion = 16143.103521 eV Total energy + Delta-G solvation = -2909.941202 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61016 -36.79940 -36.29388 -34.42110 -31.89856 -30.35527 -29.51069 -28.25608 -25.76322 -23.64609 -23.15961 -21.78330 -20.58901 -19.38995 -18.41789 -16.93214 -16.34822 -15.68457 -15.31395 -14.75985 -14.69422 -14.28244 -14.01403 -13.66885 -13.21792 -12.86988 -12.59729 -12.25004 -12.14269 -11.65543 -11.29615 -11.25294 -11.06351 -10.92813 -10.75209 -10.64189 -10.36826 -10.15972 -10.05893 -9.89901 -9.83699 -9.07964 -8.59151 -8.02278 -7.22688 -6.77112 -5.91511 -3.41200 1.08360 1.33339 2.00723 2.56520 2.85591 3.35022 3.40313 3.46729 3.80845 4.39151 4.43684 4.95185 5.04165 5.23904 5.25544 5.48802 5.51995 5.77173 5.92974 6.06121 6.16939 6.22187 6.30664 6.42717 6.47472 6.50773 6.54755 6.63211 6.85011 6.91998 6.95066 7.15398 7.21160 7.44829 7.74210 7.82253 8.38068 9.04942 9.68769 10.24473 11.10168 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.007191 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.835104 B = 3892.793631 C = 5205.620737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.140 3.860 3 N -0.571 5.571 4 C -0.253 4.253 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.196 3.804 13 C -0.119 4.119 14 C -0.133 4.133 15 C -0.080 4.080 16 C -0.135 4.135 17 C -0.091 4.091 18 C -0.107 4.107 19 C -0.152 4.152 20 C 0.135 3.865 21 O -0.494 6.494 22 S 0.051 5.949 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.258 0.742 29 H 0.039 0.961 30 H 0.123 0.877 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.226 -3.601 8.589 13.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.014 3.986 3 N -0.289 5.289 4 C -0.383 4.383 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.204 1.204 12 C 0.067 3.933 13 C -0.238 4.238 14 C -0.162 4.162 15 C -0.090 4.090 16 C -0.250 4.250 17 C -0.114 4.114 18 C -0.128 4.128 19 C -0.174 4.174 20 C 0.089 3.911 21 O -0.303 6.303 22 S 0.314 5.686 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.140 0.860 31 H 0.161 0.839 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 8.345 -5.016 8.727 13.075 hybrid contribution 1.196 2.037 -1.049 2.585 sum 9.541 -2.979 7.679 12.604 Atomic orbital electron populations 1.22248 0.99234 0.98596 1.02014 1.20917 0.92182 0.86916 0.98536 1.43829 1.73084 1.10341 1.01692 1.19055 1.37472 0.91486 0.90246 0.91908 1.25051 0.97052 0.98440 0.98253 1.69936 1.32246 1.10612 1.39861 0.86512 0.80510 0.79082 0.81738 1.20627 1.21483 1.20403 1.19842 0.84051 1.03003 0.86397 1.25761 1.03989 0.95382 0.98682 1.20684 0.88950 1.03234 1.03287 1.19753 0.94024 0.96056 0.99142 1.22642 0.98559 0.99637 1.04194 1.20413 0.90685 0.99967 1.00351 1.20716 0.96751 0.95858 0.99499 1.21059 0.98194 0.98631 0.99483 1.18306 0.90461 0.89280 0.93061 1.84820 1.93844 1.14692 1.36991 1.83946 0.97480 1.32769 1.54397 0.94841 0.93757 0.92502 0.93704 0.94730 0.93230 0.94232 0.86013 0.83945 0.85953 0.85472 0.85470 0.75669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 37.16 0.38 -2.79 16 2 C 0.14 2.96 6.39 -4.04 -0.03 2.94 16 3 N -0.57 -13.85 2.43 -174.61 -0.43 -14.28 16 4 C -0.25 -6.75 9.48 -15.06 -0.14 -6.90 16 5 H 0.06 1.71 7.93 -52.49 -0.42 1.29 16 6 C 0.01 0.33 4.94 -17.43 -0.09 0.24 16 7 N -0.88 -24.28 11.34 55.49 0.63 -23.65 16 8 Si 0.89 21.32 29.61 -169.99 -5.03 16.29 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.20 4.50 5.73 -5.19 -0.03 4.47 16 13 C -0.12 -2.50 5.96 -36.20 -0.22 -2.72 16 14 C -0.13 -2.78 10.09 -38.63 -0.39 -3.17 16 15 C -0.08 -1.50 6.04 -105.26 -0.64 -2.14 16 16 C -0.13 -2.34 6.48 -38.43 -0.25 -2.59 16 17 C -0.09 -1.30 10.06 -39.23 -0.39 -1.69 16 18 C -0.11 -1.34 10.02 -39.67 -0.40 -1.74 16 19 C -0.15 -2.08 9.93 -39.61 -0.39 -2.47 16 20 C 0.14 2.22 6.76 -38.54 -0.26 1.96 16 21 O -0.49 -7.68 13.41 -19.35 -0.26 -7.94 16 22 S 0.05 0.90 23.20 -107.50 -2.49 -1.59 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 24 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 27 H 0.03 0.67 8.08 -51.93 -0.42 0.26 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.12 3.12 5.33 -51.93 -0.28 2.84 16 31 H 0.14 3.18 8.06 -52.48 -0.42 2.76 16 32 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.39 4.07 9.06 45.56 0.41 4.48 16 LS Contribution 314.90 15.07 4.75 4.75 Total: -1.00 -29.58 314.90 -9.31 -38.88 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.63 Total: 4.14 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.84 Total: -16.59 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.20 Total: -37.93 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.26 Total: -7.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.58 -9.31 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893969799.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.350 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds