Wall clock time and date at job start Mon Mar 30 2020 02:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50707 * 120.00000 * 2 1 4 4 N 1.46499 * 109.47005 * 125.00107 * 3 2 1 5 5 C 1.46502 * 120.00070 * 270.00396 * 4 3 2 6 6 C 1.50708 * 109.46664 * 259.85635 * 5 4 3 7 7 C 1.30997 * 119.99934 * 125.00099 * 6 5 4 8 8 C 1.34782 * 119.99951 * 90.00082 * 4 3 2 9 9 O 1.21757 * 120.00066 * 1.33678 * 8 4 3 10 10 C 1.46232 * 119.99871 * 181.33576 * 8 4 3 11 11 S 1.75670 * 125.22827 * 352.84007 * 10 8 4 12 12 C 1.75474 * 92.09229 * 180.02562 * 11 10 8 13 13 C 1.32770 * 111.35881 * 359.70527 * 12 11 10 14 14 C 1.39538 * 125.22984 * 172.85798 * 10 8 4 15 15 C 1.40541 * 123.71486 * 359.97438 * 14 10 8 16 16 H 1.08003 * 119.99893 * 355.95193 * 15 14 10 17 17 C 1.40306 * 120.00112 * 175.94492 * 15 14 10 18 18 N 1.30641 * 120.00043 * 212.68216 * 17 15 14 19 19 Si 1.86794 * 120.00086 * 32.68566 * 17 15 14 20 20 H 1.48502 * 109.47156 * 263.76411 * 19 17 15 21 21 H 1.48501 * 109.47087 * 23.76406 * 19 17 15 22 22 H 1.48500 * 109.47192 * 143.76492 * 19 17 15 23 23 H 1.07997 * 119.99518 * 179.97438 * 1 2 3 24 24 H 1.08003 * 119.99726 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00169 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47054 * 4.99944 * 3 2 1 27 27 H 1.09006 * 109.47016 * 245.00190 * 3 2 1 28 28 H 1.08994 * 109.46831 * 19.84993 * 5 4 3 29 29 H 1.08991 * 109.47452 * 139.85541 * 5 4 3 30 30 H 1.07994 * 119.99726 * 304.99557 * 6 5 4 31 31 H 1.08003 * 119.99825 * 180.02562 * 7 6 5 32 32 H 1.08000 * 119.99953 * 359.97438 * 7 6 5 33 33 H 1.08002 * 124.32067 * 179.97438 * 12 11 10 34 34 H 1.08000 * 122.78194 * 180.25070 * 13 12 11 35 35 H 0.97003 * 120.00001 * 354.98822 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 3.0639 3.2761 2.5821 7 6 2.2239 4.2472 2.8417 8 6 4.2498 0.8662 0.9823 9 8 4.6188 0.4457 -0.0991 10 6 5.1693 0.8659 2.1194 11 16 4.8468 1.5976 3.6836 12 6 6.4124 1.1087 4.3071 13 6 7.1088 0.4406 3.3953 14 6 6.4378 0.2846 2.1287 15 6 6.9974 -0.3844 1.0267 16 1 6.4145 -0.5274 0.1288 17 6 8.3134 -0.8664 1.0929 18 7 9.0541 -0.8933 0.0171 19 14 9.0064 -1.4698 2.7192 20 1 9.7784 -0.3774 3.3641 21 1 7.8917 -1.8810 3.6101 22 1 9.9000 -2.6307 2.4763 23 1 -0.5399 -0.9353 -0.0004 24 1 -0.5400 0.9354 0.0004 25 1 1.8501 -0.9353 -0.0004 26 1 1.3586 2.1317 0.0896 27 1 2.6214 1.4027 -0.9314 28 1 1.4700 1.8613 2.4716 29 1 2.9591 1.2443 3.2266 30 1 4.1183 3.4867 2.4808 31 1 2.5858 5.2586 2.9539 32 1 1.1695 4.0366 2.9426 33 1 6.7630 1.3203 5.3065 34 1 8.0976 0.0499 3.5853 35 1 8.6726 -0.6489 -0.8407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124754652.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:13 Heat of formation + Delta-G solvation = 22.138635 kcal Electronic energy + Delta-G solvation = -19253.312648 eV Core-core repulsion = 16343.574086 eV Total energy + Delta-G solvation = -2909.738562 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.60959 -38.34715 -37.03387 -35.40751 -35.32743 -33.20288 -30.92175 -28.90862 -27.61328 -26.06068 -23.42248 -22.48056 -21.09189 -20.96477 -20.43039 -18.85729 -18.41303 -17.11257 -16.76764 -16.53881 -16.37405 -15.84968 -15.13436 -15.04806 -14.96901 -14.28866 -14.26554 -14.06479 -13.56228 -13.43911 -13.22763 -12.98971 -12.69094 -12.55656 -12.27728 -12.12507 -12.01012 -11.58959 -11.07610 -10.81982 -10.54797 -10.36727 -10.20863 -9.70548 -9.65033 -9.44989 -8.93654 -6.54892 0.23398 1.10953 1.20040 1.30480 1.40377 1.53867 1.66095 1.73244 1.83763 2.03644 2.41526 2.54462 3.13062 3.86503 4.01807 4.07986 4.19385 4.22287 4.31362 4.45981 4.53069 4.68305 4.80163 4.87411 5.02698 5.10860 5.18202 5.23362 5.34735 5.53144 5.63117 5.66563 5.77350 5.82824 5.99145 6.15904 6.29576 6.56166 6.83725 7.58948 7.67603 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.006882 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.496835 B = 4067.712017 C = 5037.243415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.190 4.190 3 C 0.149 3.851 4 N -0.620 5.620 5 C 0.130 3.870 6 C -0.190 4.190 7 C -0.159 4.159 8 C 0.587 3.413 9 O -0.615 6.615 10 C -0.492 4.492 11 S 0.102 5.898 12 C -0.194 4.194 13 C -0.209 4.209 14 C 0.098 3.902 15 C -0.477 4.477 16 H 0.069 0.931 17 C 0.009 3.991 18 N -0.780 5.780 19 Si 1.108 2.892 20 H -0.243 1.243 21 H -0.255 1.255 22 H -0.272 1.272 23 H 0.111 0.889 24 H 0.124 0.876 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.055 0.945 28 H 0.115 0.885 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.185 0.815 34 H 0.125 0.875 35 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.207 5.932 9.177 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.209 4.209 3 C 0.027 3.973 4 N -0.351 5.351 5 C 0.006 3.994 6 C -0.211 4.211 7 C -0.197 4.197 8 C 0.387 3.613 9 O -0.502 6.502 10 C -0.610 4.610 11 S 0.363 5.637 12 C -0.328 4.328 13 C -0.241 4.241 14 C 0.087 3.913 15 C -0.507 4.507 16 H 0.088 0.912 17 C -0.213 4.213 18 N -0.399 5.399 19 Si 0.927 3.073 20 H -0.169 1.169 21 H -0.179 1.179 22 H -0.198 1.198 23 H 0.129 0.871 24 H 0.142 0.858 25 H 0.091 0.909 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.202 0.798 34 H 0.142 0.858 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.822 5.926 9.800 16.459 hybrid contribution 0.355 -0.475 -2.301 2.376 sum -11.467 5.451 7.499 14.745 Atomic orbital electron populations 1.24026 0.94063 1.03589 0.97530 1.23185 0.97072 0.97940 1.02715 1.20472 0.91430 0.96157 0.89227 1.47698 1.11004 1.63974 1.12445 1.21028 1.00900 0.92807 0.84654 1.23367 1.00113 0.95438 1.02153 1.23983 0.99620 0.97808 0.98243 1.17230 0.81260 0.76147 0.86702 1.90600 1.77519 1.52532 1.29541 1.22764 1.03447 1.34401 1.00354 1.83095 1.13481 1.61767 1.05345 1.26319 1.01716 1.01329 1.03395 1.21368 1.01598 1.07041 0.94130 1.18193 0.90486 0.90850 0.91741 1.21027 0.99742 1.28655 1.01246 0.91246 1.29044 0.93767 0.90511 1.07946 1.70550 1.37476 1.29912 1.01951 0.83339 0.76638 0.77718 0.69566 1.16922 1.17924 1.19810 0.87112 0.85779 0.90887 0.87230 0.92676 0.86687 0.89592 0.88592 0.87243 0.86224 0.79807 0.85813 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 14.32 67.78 0.97 -2.35 16 2 C -0.19 -5.85 9.85 25.64 0.25 -5.59 16 3 C 0.15 4.98 5.81 85.64 0.50 5.48 16 4 N -0.62 -24.40 2.48 -835.68 -2.07 -26.47 16 5 C 0.13 3.97 5.45 85.64 0.47 4.44 16 6 C -0.19 -5.40 7.73 25.65 0.20 -5.20 16 7 C -0.16 -3.23 14.32 67.78 0.97 -2.26 16 8 C 0.59 30.50 7.51 86.32 0.65 31.15 16 9 O -0.61 -37.49 13.90 -4.53 -0.06 -37.55 16 10 C -0.49 -25.11 6.26 24.66 0.15 -24.96 16 11 S 0.10 3.87 15.32 -56.49 -0.87 3.01 16 12 C -0.19 -7.36 11.07 66.64 0.74 -6.62 16 13 C -0.21 -9.51 8.11 22.60 0.18 -9.33 16 14 C 0.10 5.33 5.71 -20.89 -0.12 5.21 16 15 C -0.48 -28.47 9.03 23.34 0.21 -28.26 16 16 H 0.07 4.72 5.78 -2.91 -0.02 4.70 16 17 C 0.01 0.49 5.45 85.37 0.46 0.96 16 18 N -0.78 -42.90 13.64 21.89 0.30 -42.60 16 19 Si 1.11 45.71 24.83 68.60 1.70 47.42 16 20 H -0.24 -8.93 6.81 99.48 0.68 -8.26 16 21 H -0.25 -10.15 6.64 99.48 0.66 -9.49 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 23 H 0.11 2.06 8.06 -2.91 -0.02 2.03 16 24 H 0.12 1.96 7.84 -2.91 -0.02 1.94 16 25 H 0.07 2.75 8.06 -2.91 -0.02 2.73 16 26 H 0.11 2.71 7.72 -2.39 -0.02 2.69 16 27 H 0.05 2.17 7.40 -2.38 -0.02 2.15 16 28 H 0.12 2.63 7.65 -2.39 -0.02 2.61 16 29 H 0.09 2.88 4.75 -20.44 -0.10 2.78 16 30 H 0.10 3.34 6.58 -3.92 -0.03 3.32 16 31 H 0.11 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.12 1.80 7.84 -2.91 -0.02 1.78 16 33 H 0.18 5.19 8.06 -2.91 -0.02 5.16 16 34 H 0.12 5.23 2.73 -2.91 -0.01 5.22 16 35 H 0.29 16.04 8.73 -92.71 -0.81 15.23 16 Total: -1.00 -72.31 300.58 5.53 -66.78 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.89 Total: 26.75 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 5.64 Total: -37.32 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -1.77 Total: -69.07 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.06 Total: -37.55 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.70 Total: 47.42 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -0.87 Total: 3.01 kcal Total: -72.31 5.53 -66.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124754652.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.918 kcal (2) G-P(sol) polarization free energy of solvation -72.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds