Wall clock time and date at job start Mon Mar 30 2020 01:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 119.99676 * 2 1 4 4 H 1.48506 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47051 * 299.99825 * 3 2 1 6 6 H 1.48490 * 109.47417 * 60.00125 * 3 2 1 7 7 C 1.38895 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99423 * 200.96512 * 7 2 1 9 9 N 1.37205 * 120.00251 * 20.95982 * 7 2 1 10 10 C 1.34771 * 120.00102 * 210.81134 * 9 7 2 11 11 O 1.21276 * 120.00435 * 186.65817 * 10 9 7 12 12 C 1.50696 * 120.00004 * 6.65444 * 10 9 7 13 13 H 1.08998 * 115.55193 * 11.79716 * 12 10 9 14 14 C 1.53003 * 117.50059 * 226.08751 * 12 10 9 15 15 C 1.53000 * 60.00508 * 252.51174 * 14 12 10 16 16 H 1.09002 * 117.51779 * 107.47636 * 15 14 12 17 17 N 1.46495 * 117.49926 * 252.51391 * 15 14 12 18 18 O 1.21793 * 120.00093 * 188.61854 * 17 15 14 19 19 O 1.21797 * 120.00058 * 8.61633 * 17 15 14 20 20 C 1.39428 * 120.00125 * 30.80539 * 9 7 2 21 21 C 1.39062 * 119.70068 * 197.01674 * 20 9 7 22 22 C 1.38384 * 119.10098 * 180.02562 * 21 20 9 23 23 C 1.38827 * 118.49167 * 359.97438 * 22 21 20 24 24 C 1.38146 * 119.30852 * 0.02562 * 23 22 21 25 25 N 1.31878 * 120.85396 * 359.97438 * 24 23 22 26 26 H 0.96994 * 119.99967 * 4.27225 * 1 2 3 27 27 H 1.09004 * 117.49686 * 0.02562 * 14 12 10 28 28 H 1.09002 * 117.49809 * 145.02015 * 14 12 10 29 29 H 1.08004 * 120.45011 * 0.02562 * 21 20 9 30 30 H 1.07998 * 120.75492 * 180.02562 * 22 21 20 31 31 H 1.07994 * 120.34695 * 179.97438 * 23 22 21 32 32 H 1.08003 * 119.56915 * 179.71981 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8894 2.3965 1.2124 7 6 2.0087 -1.2028 -0.0005 8 1 3.0350 -1.2338 0.3341 9 7 1.3908 -2.3516 -0.4261 10 6 1.7416 -3.5408 0.1022 11 8 1.2849 -4.5665 -0.3563 12 6 2.7014 -3.5961 1.2626 13 1 2.9112 -2.6415 1.7452 14 6 3.8390 -4.6167 1.1905 15 6 2.6678 -4.8432 2.1485 16 1 1.9511 -5.6235 1.8921 17 7 2.9203 -4.6629 3.5802 18 8 2.0713 -4.9813 4.3933 19 8 3.9794 -4.1945 3.9575 20 6 0.3999 -2.2887 -1.4050 21 6 -0.4620 -3.3654 -1.5830 22 6 -1.4406 -3.2899 -2.5586 23 6 -1.5240 -2.1354 -3.3251 24 6 -0.6342 -1.1043 -3.0935 25 7 0.2883 -1.2046 -2.1565 26 1 -0.4850 0.8377 -0.0626 27 1 3.8934 -5.2479 0.3035 28 1 4.7975 -4.3336 1.6255 29 1 -0.3690 -4.2485 -0.9682 30 1 -2.1245 -4.1101 -2.7194 31 1 -2.2760 -2.0447 -4.0948 32 1 -0.6924 -0.2061 -3.6904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130568142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:05 Heat of formation + Delta-G solvation = 38.661352 kcal Electronic energy + Delta-G solvation = -21398.294412 eV Core-core repulsion = 17942.979114 eV Total energy + Delta-G solvation = -3455.315298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.41162 -41.86577 -40.11124 -37.98219 -37.39384 -36.85458 -33.84349 -32.91757 -31.25455 -28.94830 -27.21280 -26.03963 -24.14963 -23.46147 -23.18671 -21.25653 -20.16441 -19.98145 -19.44540 -18.37762 -18.19384 -17.26689 -17.03611 -16.74358 -16.39118 -15.87532 -15.56288 -14.96194 -14.59984 -14.36692 -13.94843 -13.62848 -13.37318 -13.07489 -12.94169 -12.72964 -12.68186 -12.55320 -12.35685 -12.25114 -12.09425 -11.98557 -11.49523 -10.89224 -10.66101 -10.36656 -9.88614 -9.06269 -8.36884 -6.21109 -0.70357 0.31640 0.50839 0.67360 1.29976 1.45696 1.56310 1.56454 2.06027 2.25068 2.42038 2.84054 3.00853 3.19489 3.49603 3.50032 3.78665 3.99346 4.16380 4.21232 4.47904 4.48945 4.50357 4.65615 4.70101 5.07674 5.20414 5.25827 5.37283 5.50206 5.57484 5.98882 6.30663 6.47041 6.83986 7.02236 7.50373 7.70817 8.62084 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.016155 B = 0.007093 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.845123 B = 3946.573868 C = 5196.529166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.046 3.954 3 Si 0.979 3.021 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.394 4.394 8 H 0.113 0.887 9 N -0.373 5.373 10 C 0.495 3.505 11 O -0.581 6.581 12 C -0.129 4.129 13 H 0.144 0.856 14 C -0.072 4.072 15 C -0.070 4.070 16 H 0.183 0.817 17 N 0.019 4.981 18 O -0.202 6.202 19 O -0.147 6.147 20 C 0.354 3.646 21 C -0.230 4.230 22 C -0.071 4.071 23 C -0.212 4.212 24 C 0.098 3.902 25 N -0.487 5.487 26 H 0.270 0.730 27 H 0.149 0.851 28 H 0.161 0.839 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 -4.364 -2.936 6.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.164 4.164 3 Si 0.802 3.198 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.519 4.519 8 H 0.130 0.870 9 N -0.082 5.082 10 C 0.286 3.714 11 O -0.466 6.466 12 C -0.151 4.151 13 H 0.162 0.838 14 C -0.110 4.110 15 C -0.170 4.170 16 H 0.200 0.800 17 N 0.538 4.462 18 O -0.411 6.411 19 O -0.372 6.372 20 C 0.126 3.874 21 C -0.252 4.252 22 C -0.097 4.097 23 C -0.233 4.233 24 C -0.062 4.062 25 N -0.201 5.201 26 H 0.080 0.920 27 H 0.167 0.833 28 H 0.178 0.822 29 H 0.164 0.836 30 H 0.174 0.826 31 H 0.179 0.821 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.198 -4.188 -3.605 6.384 hybrid contribution -0.715 0.472 0.338 0.921 sum 2.483 -3.716 -3.267 5.536 Atomic orbital electron populations 1.70004 1.08289 1.29161 1.41234 1.25882 0.95302 1.02578 0.92594 0.85129 0.79527 0.77717 0.77387 1.17653 1.20580 1.20799 1.19753 0.97813 0.85387 1.48924 0.86963 1.41213 1.31017 1.07304 1.28636 1.19563 0.84494 0.82754 0.84577 1.90453 1.58003 1.34425 1.63722 1.22539 1.01375 0.95189 0.96035 0.83802 1.23875 0.92605 0.96615 0.97901 1.25101 1.11027 1.05594 0.75237 0.80012 1.44007 0.99587 0.97378 1.05260 1.94558 1.40497 1.54652 1.51360 1.94478 1.13695 1.43578 1.85423 1.18616 0.89965 0.90154 0.88660 1.22555 0.97835 1.01441 1.03390 1.21669 0.95893 0.98548 0.93570 1.22172 1.02845 0.94628 1.03670 1.22868 0.91138 0.99035 0.93175 1.67090 1.23917 1.24124 1.05014 0.91997 0.83339 0.82170 0.83643 0.82635 0.82120 0.81911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.47 11.09 21.65 0.24 -45.23 16 2 C 0.05 2.28 4.28 84.91 0.36 2.64 16 3 Si 0.98 39.69 29.60 68.60 2.03 41.72 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.39 -19.31 8.27 84.01 0.69 -18.62 16 8 H 0.11 5.04 6.87 -2.91 -0.02 5.02 16 9 N -0.37 -18.35 2.81 -464.39 -1.30 -19.66 16 10 C 0.49 21.43 7.23 87.66 0.63 22.06 16 11 O -0.58 -25.75 13.19 -3.02 -0.04 -25.79 16 12 C -0.13 -4.41 5.33 -11.54 -0.06 -4.47 16 13 H 0.14 5.17 6.64 -2.39 -0.02 5.15 16 14 C -0.07 -1.72 9.65 30.60 0.30 -1.43 16 15 C -0.07 -2.07 6.43 45.00 0.29 -1.79 16 16 H 0.18 5.30 7.85 -2.39 -0.02 5.28 16 17 N 0.02 0.62 4.33 -169.38 -0.73 -0.12 16 18 O -0.20 -7.29 19.24 18.90 0.36 -6.92 16 19 O -0.15 -4.65 18.28 18.89 0.35 -4.31 16 20 C 0.35 17.59 6.10 132.90 0.81 18.40 16 21 C -0.23 -10.30 8.84 22.50 0.20 -10.10 16 22 C -0.07 -2.55 10.17 22.45 0.23 -2.32 16 23 C -0.21 -7.06 10.11 22.39 0.23 -6.84 16 24 C 0.10 3.81 11.18 84.66 0.95 4.76 16 25 N -0.49 -23.50 7.13 -192.96 -1.37 -24.88 16 26 H 0.27 13.78 8.31 -92.71 -0.77 13.00 16 27 H 0.15 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.16 2.98 7.63 -2.39 -0.02 2.96 16 29 H 0.15 6.72 5.27 -4.30 -0.02 6.70 16 30 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 32 H 0.16 5.28 8.06 -2.91 -0.02 5.26 16 Total: -1.00 -63.87 289.44 5.32 -58.55 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 1.16 Total: 24.31 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 4.63 Total: 2.30 kcal Atomic # 7 Polarization: -86.70 SS G_CDS: -3.17 Total: -89.87 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: 0.67 Total: -37.01 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -63.87 5.32 -58.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130568142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.211 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds