Wall clock time and date at job start Mon Mar 30 2020 02:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 110.99847 * 2 1 4 4 C 1.50697 * 109.47000 * 293.95010 * 3 2 1 5 5 H 1.08001 * 120.00239 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99896 * 180.02562 * 4 3 2 7 7 N 1.31518 * 120.00335 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00136 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.46851 * 89.99770 * 8 6 4 10 10 H 1.48497 * 109.47392 * 209.99971 * 8 6 4 11 11 H 1.48502 * 109.46890 * 330.00117 * 8 6 4 12 12 C 1.46908 * 110.99509 * 123.95023 * 2 1 3 13 13 C 1.50701 * 109.47173 * 66.04920 * 12 2 1 14 14 C 1.38391 * 119.99801 * 269.99820 * 13 12 2 15 15 F 1.35094 * 120.00056 * 0.02562 * 14 13 12 16 16 C 1.38642 * 119.99745 * 179.97438 * 14 13 12 17 17 F 1.35095 * 119.99884 * 180.27133 * 16 14 13 18 18 C 1.38395 * 119.99959 * 0.02562 * 16 14 13 19 19 C 1.38386 * 119.99935 * 0.02562 * 18 16 14 20 20 F 1.35104 * 119.99673 * 179.97438 * 19 18 16 21 21 C 1.38395 * 119.99919 * 89.99395 * 13 12 2 22 22 F 1.35099 * 120.00114 * 0.04543 * 21 13 12 23 23 H 1.08998 * 109.46924 * 296.04950 * 1 2 3 24 24 H 1.09001 * 109.46812 * 56.04646 * 1 2 3 25 25 H 1.08997 * 109.47149 * 176.04691 * 1 2 3 26 26 H 1.09000 * 109.47514 * 53.95490 * 3 2 1 27 27 H 1.09003 * 109.47055 * 173.95071 * 3 2 1 28 28 H 0.96993 * 120.00155 * 179.97438 * 7 6 4 29 29 H 1.08991 * 109.47121 * 306.04583 * 12 2 1 30 30 H 1.09006 * 109.46473 * 186.04691 * 12 2 1 31 31 H 1.08000 * 119.99408 * 179.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0277 3.3491 -1.5289 7 7 2.7137 4.0013 -0.6158 8 14 1.5828 4.1868 -3.1382 9 1 0.2709 4.8678 -2.9955 10 1 2.6253 5.1875 -3.4802 11 1 1.4983 3.1711 -4.2182 12 6 1.9954 -0.7660 1.1377 13 6 1.6369 -2.2204 0.9730 14 6 0.4497 -2.7038 1.4947 15 9 -0.3880 -1.8717 2.1511 16 6 0.1196 -4.0417 1.3427 17 9 -1.0418 -4.5124 1.8472 18 6 0.9776 -4.8940 0.6698 19 6 2.1653 -4.4108 0.1491 20 9 3.0031 -5.2429 -0.5074 21 6 2.4948 -3.0727 0.3000 22 9 3.6542 -2.6009 -0.2085 23 1 -0.3633 0.4513 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0708 26 1 1.5611 1.9274 0.8309 27 1 3.0797 1.3444 0.1083 28 1 2.9889 4.9171 -0.7781 29 1 1.5610 -0.3872 2.0628 30 1 3.0797 -0.6610 1.1757 31 1 0.7206 -5.9363 0.5518 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138229849.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:25 Heat of formation + Delta-G solvation = -162.093658 kcal Electronic energy + Delta-G solvation = -21518.160625 eV Core-core repulsion = 17492.363235 eV Total energy + Delta-G solvation = -4025.797390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.75777 -50.68252 -49.81758 -49.75666 -40.15325 -38.12198 -34.82989 -32.84975 -30.95954 -29.34165 -28.43922 -26.11800 -24.15793 -23.72853 -22.06980 -19.68367 -19.49956 -19.09064 -18.48164 -18.06953 -17.65491 -17.05707 -16.88828 -16.77600 -16.43488 -16.05747 -15.98524 -15.80914 -15.63900 -15.57803 -15.41468 -14.44534 -14.30998 -13.87483 -13.51681 -13.28137 -12.99675 -12.87135 -12.75209 -12.56889 -12.49909 -12.32801 -11.93275 -11.36605 -10.63898 -10.28999 -9.79493 -9.18168 -8.22099 -6.32111 -0.64444 -0.56526 1.41468 1.42783 1.54329 1.69856 2.21174 2.39935 2.55370 2.69840 3.00298 3.10849 3.17653 3.31987 3.55293 3.91177 4.13593 4.18718 4.37055 4.44777 4.49399 4.58442 4.63705 4.71315 4.98053 5.12498 5.21853 5.35659 5.60752 5.97711 6.16982 6.46162 6.82118 7.37305 8.89160 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.023580 B = 0.004923 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.180582 B = 5686.712700 C = 6297.996953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.541 5.541 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.089 3.911 13 C -0.094 4.094 14 C 0.088 3.912 15 F -0.121 7.121 16 C 0.097 3.903 17 F -0.114 7.114 18 C -0.109 4.109 19 C 0.095 3.905 20 F -0.115 7.115 21 C 0.098 3.902 22 F -0.121 7.121 23 H 0.017 0.983 24 H 0.063 0.937 25 H 0.065 0.935 26 H -0.030 1.030 27 H 0.009 0.991 28 H 0.265 0.735 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.272 -19.421 4.269 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.265 5.265 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.082 0.918 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.794 3.206 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.039 4.039 13 C -0.096 4.096 14 C 0.066 3.934 15 F -0.099 7.099 16 C 0.077 3.923 17 F -0.092 7.092 18 C -0.128 4.128 19 C 0.075 3.925 20 F -0.093 7.093 21 C 0.077 3.923 22 F -0.100 7.100 23 H 0.036 0.964 24 H 0.082 0.918 25 H 0.084 0.916 26 H -0.013 1.013 27 H 0.027 0.973 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.026 -19.463 3.876 20.250 hybrid contribution -0.155 1.420 0.201 1.442 sum -4.182 -18.044 4.077 18.965 Atomic orbital electron populations 1.22261 0.87320 1.00722 1.00430 1.62131 1.08410 1.15914 1.40031 1.19424 0.93995 0.82843 0.95516 1.21425 1.35094 0.97540 1.02273 0.91833 1.25889 0.94909 0.97981 1.00682 1.70074 1.39123 1.11953 1.36201 0.85378 0.77988 0.78094 0.79138 1.19733 1.20711 1.19006 1.20893 1.01564 0.87762 0.93693 1.19494 0.93483 0.97023 0.99614 1.17227 0.89574 0.87375 0.99189 1.91561 1.69243 1.70970 1.78129 1.17031 0.85159 0.89594 1.00566 1.91591 1.44517 1.88177 1.84894 1.21031 0.90745 1.03414 0.97642 1.17105 0.90932 0.85537 0.98949 1.91590 1.69644 1.69938 1.78143 1.17269 0.84776 0.90982 0.99315 1.91570 1.45003 1.88834 1.84550 0.96416 0.91783 0.91594 1.01276 0.97272 0.92597 0.92900 0.89405 0.77446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 8.23 127.69 1.05 2.65 16 2 N -0.54 -23.50 4.74 -931.63 -4.42 -27.92 16 3 C 0.21 11.07 4.72 85.56 0.40 11.48 16 4 C -0.53 -29.75 8.46 25.60 0.22 -29.53 16 5 H 0.06 3.53 7.12 -2.91 -0.02 3.51 16 6 C 0.00 0.21 5.46 84.65 0.46 0.67 16 7 N -0.93 -55.96 13.29 21.45 0.28 -55.68 16 8 Si 0.97 44.22 29.54 68.60 2.03 46.25 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 C 0.09 3.17 4.79 85.56 0.41 3.58 16 13 C -0.09 -2.70 4.89 -19.79 -0.10 -2.80 16 14 C 0.09 2.22 5.94 22.40 0.13 2.35 16 15 F -0.12 -3.40 14.99 44.97 0.67 -2.73 16 16 C 0.10 1.90 7.30 22.40 0.16 2.06 16 17 F -0.11 -2.21 17.18 44.97 0.77 -1.44 16 18 C -0.11 -1.66 10.00 22.34 0.22 -1.44 16 19 C 0.10 1.97 7.30 22.40 0.16 2.14 16 20 F -0.11 -2.42 17.18 44.97 0.77 -1.65 16 21 C 0.10 2.65 7.25 22.40 0.16 2.81 16 22 F -0.12 -3.88 16.39 44.97 0.74 -3.15 16 23 H 0.02 0.68 8.09 -2.39 -0.02 0.66 16 24 H 0.06 2.68 6.76 -2.39 -0.02 2.67 16 25 H 0.07 2.21 5.90 -2.39 -0.01 2.20 16 26 H -0.03 -1.74 8.12 -2.39 -0.02 -1.76 16 27 H 0.01 0.52 7.93 -2.39 -0.02 0.51 16 28 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.05 1.85 7.62 -2.39 -0.02 1.83 16 30 H 0.09 3.19 7.43 -2.38 -0.02 3.17 16 31 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -63.34 284.30 5.32 -58.02 By element: Atomic # 1 Polarization: -6.86 SS G_CDS: 1.18 Total: -5.68 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: 3.29 Total: -6.03 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -4.14 Total: -83.60 kcal Atomic # 9 Polarization: -11.91 SS G_CDS: 2.96 Total: -8.96 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -63.34 5.32 -58.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138229849.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.075 kcal (2) G-P(sol) polarization free energy of solvation -63.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds