Wall clock time and date at job start Mon Mar 30 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35380 * 116.99454 * 2 1 4 4 C 1.36092 * 125.57555 * 180.02562 * 3 2 1 5 5 C 1.39918 * 107.17659 * 179.97438 * 4 3 2 6 6 C 1.37839 * 106.67459 * 0.02562 * 5 4 3 7 7 C 1.46118 * 126.03039 * 179.97438 * 6 5 4 8 8 O 1.21790 * 120.00471 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.40535 * 120.00236 * 179.97438 * 9 7 6 11 11 C 1.40658 * 126.08355 * 0.03056 * 10 9 7 12 12 N 1.30907 * 108.39018 * 179.69348 * 11 10 9 13 13 N 1.40067 * 108.41077 * 0.43841 * 12 11 10 14 14 C 1.37312 * 126.07498 * 179.81752 * 13 12 11 15 15 H 1.08002 * 120.00634 * 179.69738 * 14 13 12 16 16 C 1.38992 * 119.99460 * 359.41616 * 14 13 12 17 17 N 1.31294 * 120.00157 * 0.27649 * 16 14 13 18 18 Si 1.86803 * 119.99838 * 180.27795 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00076 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00027 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99826 * 18 16 14 22 22 C 1.35695 * 126.08269 * 179.97438 * 10 9 7 23 23 O 1.34013 * 125.58105 * 0.28634 * 3 2 1 24 24 H 1.08994 * 109.47199 * 300.00044 * 1 2 3 25 25 H 1.09002 * 109.47125 * 60.00265 * 1 2 3 26 26 H 1.09000 * 109.46661 * 179.97438 * 1 2 3 27 27 H 1.08003 * 126.41190 * 359.97318 * 4 3 2 28 28 H 1.07999 * 126.66176 * 179.97438 * 5 4 3 29 29 H 0.97006 * 120.00050 * 0.02562 * 9 7 6 30 30 H 1.08004 * 125.80720 * 359.93859 * 11 10 9 31 31 H 0.96996 * 120.00263 * 179.97438 * 17 16 14 32 32 H 1.07993 * 126.24986 * 0.05455 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2063 0.0000 4 6 3.3892 1.4094 -0.0005 5 6 3.5983 2.7928 -0.0009 6 6 2.3518 3.3812 0.0000 7 6 2.0790 4.8167 0.0005 8 8 3.0014 5.6120 0.0006 9 7 0.8065 5.2609 0.0008 10 6 0.5441 6.6415 0.0018 11 6 1.5062 7.6676 0.0020 12 7 0.8824 8.8185 -0.0036 13 7 -0.4968 8.5743 0.0026 14 6 -1.4865 9.5261 0.0031 15 1 -2.5241 9.2264 0.0033 16 6 -1.1529 10.8754 0.0093 17 7 0.1085 11.2398 0.0092 18 14 -2.4992 12.1703 0.0178 19 1 -2.8538 12.5065 1.4201 20 1 -2.0165 13.3908 -0.6769 21 1 -3.6976 11.6430 -0.6830 22 6 -0.6825 7.2219 0.0017 23 8 1.4263 2.3958 0.0054 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.1528 0.6456 -0.0005 28 1 4.5513 3.3009 -0.0009 29 1 0.0717 4.6275 0.0011 30 1 2.5773 7.5295 0.0022 31 1 0.3413 12.1814 0.0132 32 1 -1.6322 6.7077 0.0017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142461202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:15 Heat of formation + Delta-G solvation = 33.433688 kcal Electronic energy + Delta-G solvation = -20252.736542 eV Core-core repulsion = 16797.194556 eV Total energy + Delta-G solvation = -3455.541986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.77854 -39.88970 -38.86674 -38.26669 -34.38486 -33.33951 -33.04702 -30.38051 -29.72615 -28.05170 -27.07683 -24.93200 -22.90868 -22.04144 -21.01100 -20.29330 -19.44494 -18.94149 -17.76235 -17.17446 -17.04198 -15.69167 -15.49869 -15.28194 -15.19652 -14.36935 -14.23549 -13.85006 -13.28680 -13.13835 -13.11402 -13.07264 -12.73970 -12.44466 -11.81543 -11.69763 -11.48098 -11.28105 -10.99349 -10.54899 -10.25764 -10.06748 -9.55417 -9.20525 -8.84823 -8.19657 -8.07386 -6.73360 -6.57985 -4.25165 1.10139 2.11622 2.30895 2.93396 2.97298 3.04074 3.09284 3.28670 3.57367 3.73094 3.87026 4.41478 4.66570 4.75039 4.76613 4.79258 5.00103 5.07802 5.14814 5.37800 5.61484 5.75175 6.20270 6.24369 6.34201 6.48116 6.84321 6.91641 6.94796 7.09798 7.19576 7.82775 8.10818 8.22397 8.55550 8.75243 9.34398 9.63367 10.37916 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.003408 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.157429 B = 8213.463604 C = 8887.464178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.265 6.265 3 C 0.201 3.799 4 C -0.238 4.238 5 C -0.094 4.094 6 C -0.080 4.080 7 C 0.586 3.414 8 O -0.516 6.516 9 N -0.610 5.610 10 C -0.064 4.064 11 C -0.029 4.029 12 N -0.260 5.260 13 N -0.141 5.141 14 C -0.323 4.323 15 H 0.117 0.883 16 C 0.046 3.954 17 N -0.768 5.768 18 Si 0.936 3.064 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.264 1.264 22 C -0.081 4.081 23 O -0.191 6.191 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.400 0.600 30 H 0.177 0.823 31 H 0.275 0.725 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -17.937 -0.004 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.179 6.179 3 C 0.105 3.895 4 C -0.258 4.258 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.373 3.627 8 O -0.395 6.395 9 N -0.250 5.250 10 C -0.169 4.169 11 C -0.205 4.205 12 N -0.090 5.090 13 N 0.092 4.908 14 C -0.455 4.455 15 H 0.135 0.865 16 C -0.171 4.171 17 N -0.394 5.394 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.232 4.232 23 O -0.092 6.092 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.127 0.873 27 H 0.179 0.821 28 H 0.185 0.815 29 H 0.233 0.767 30 H 0.194 0.806 31 H 0.086 0.914 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.316 -15.997 -0.010 16.000 hybrid contribution -1.361 -0.889 0.018 1.626 sum -1.677 -16.886 0.009 16.969 Atomic orbital electron populations 1.23153 0.76753 1.04780 1.02816 1.86386 1.23044 1.19038 1.89452 1.20748 0.89535 0.78214 1.01052 1.20743 0.91973 0.96915 1.16135 1.21949 0.97938 0.92338 0.99252 1.22237 0.86958 0.87239 1.16613 1.16171 0.83511 0.83404 0.79659 1.90804 1.44242 1.52606 1.51860 1.42372 1.06666 1.06148 1.69861 1.17248 0.93615 0.81727 1.24359 1.24132 0.99868 0.88840 1.07628 1.78268 0.85639 1.19417 1.25725 1.44571 1.05020 1.02364 1.38823 1.19895 0.86824 0.85400 1.53400 0.86548 1.25655 0.97453 0.98574 0.95447 1.70212 1.16381 1.17846 1.35010 0.85814 0.79872 0.79389 0.78990 1.19566 1.20051 1.18796 1.21247 0.96575 0.85561 1.19857 1.83960 1.37980 1.14271 1.72944 0.91753 0.91758 0.87329 0.82116 0.81500 0.76655 0.80580 0.91383 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 10.74 101.05 1.09 1.22 16 2 O -0.27 -2.69 10.55 -41.06 -0.43 -3.12 16 3 C 0.20 2.42 7.86 29.96 0.24 2.66 16 4 C -0.24 -2.76 10.89 -39.72 -0.43 -3.19 16 5 C -0.09 -1.26 10.66 -39.10 -0.42 -1.67 16 6 C -0.08 -1.22 7.15 -36.57 -0.26 -1.49 16 7 C 0.59 11.05 7.74 -13.10 -0.10 10.95 16 8 O -0.52 -11.31 14.01 5.11 0.07 -11.24 16 9 N -0.61 -11.48 5.46 -11.33 -0.06 -11.54 16 10 C -0.06 -1.50 6.90 -83.86 -0.58 -2.08 16 11 C -0.03 -0.77 10.85 -17.03 -0.18 -0.96 16 12 N -0.26 -7.56 10.40 30.80 0.32 -7.24 16 13 N -0.14 -3.86 3.74 -11.40 -0.04 -3.90 16 14 C -0.32 -8.51 10.25 -14.82 -0.15 -8.66 16 15 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 16 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 17 N -0.77 -21.39 11.81 55.50 0.66 -20.73 16 18 Si 0.94 18.79 29.55 -169.99 -5.02 13.77 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 22 C -0.08 -1.92 11.50 -16.38 -0.19 -2.11 16 23 O -0.19 -2.57 9.88 -19.26 -0.19 -2.76 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 28 H 0.17 2.02 8.06 -52.49 -0.42 1.59 16 29 H 0.40 6.11 8.57 -40.82 -0.35 5.76 16 30 H 0.18 4.59 5.91 -52.48 -0.31 4.28 16 31 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.15 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -33.09 295.97 -4.08 -37.17 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -2.74 Total: 9.38 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.09 Total: -4.24 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.87 Total: -43.42 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.55 Total: -17.12 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.09 -4.08 -37.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142461202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.607 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds