Wall clock time and date at job start Mon Mar 30 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35380 * 116.99454 * 2 1 4 4 C 1.36092 * 125.57555 * 180.02562 * 3 2 1 5 5 C 1.39918 * 107.17659 * 179.97438 * 4 3 2 6 6 C 1.37839 * 106.67459 * 0.02562 * 5 4 3 7 7 C 1.46118 * 126.03039 * 179.97438 * 6 5 4 8 8 O 1.21790 * 120.00471 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.40535 * 120.00236 * 179.97438 * 9 7 6 11 11 C 1.40658 * 126.08355 * 0.03056 * 10 9 7 12 12 N 1.30907 * 108.39018 * 179.69348 * 11 10 9 13 13 N 1.40067 * 108.41077 * 0.43841 * 12 11 10 14 14 C 1.37312 * 126.07498 * 179.81752 * 13 12 11 15 15 H 1.08002 * 120.00634 * 179.69738 * 14 13 12 16 16 C 1.38992 * 119.99460 * 359.41616 * 14 13 12 17 17 N 1.31294 * 120.00157 * 0.27649 * 16 14 13 18 18 Si 1.86803 * 119.99838 * 180.27795 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00076 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00027 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99826 * 18 16 14 22 22 C 1.35695 * 126.08269 * 179.97438 * 10 9 7 23 23 O 1.34013 * 125.58105 * 0.28634 * 3 2 1 24 24 H 1.08994 * 109.47199 * 300.00044 * 1 2 3 25 25 H 1.09002 * 109.47125 * 60.00265 * 1 2 3 26 26 H 1.09000 * 109.46661 * 179.97438 * 1 2 3 27 27 H 1.08003 * 126.41190 * 359.97318 * 4 3 2 28 28 H 1.07999 * 126.66176 * 179.97438 * 5 4 3 29 29 H 0.97006 * 120.00050 * 0.02562 * 9 7 6 30 30 H 1.08004 * 125.80720 * 359.93859 * 11 10 9 31 31 H 0.96996 * 120.00263 * 179.97438 * 17 16 14 32 32 H 1.07993 * 126.24986 * 0.05455 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2063 0.0000 4 6 3.3892 1.4094 -0.0005 5 6 3.5983 2.7928 -0.0009 6 6 2.3518 3.3812 0.0000 7 6 2.0790 4.8167 0.0005 8 8 3.0014 5.6120 0.0006 9 7 0.8065 5.2609 0.0008 10 6 0.5441 6.6415 0.0018 11 6 1.5062 7.6676 0.0020 12 7 0.8824 8.8185 -0.0036 13 7 -0.4968 8.5743 0.0026 14 6 -1.4865 9.5261 0.0031 15 1 -2.5241 9.2264 0.0033 16 6 -1.1529 10.8754 0.0093 17 7 0.1085 11.2398 0.0092 18 14 -2.4992 12.1703 0.0178 19 1 -2.8538 12.5065 1.4201 20 1 -2.0165 13.3908 -0.6769 21 1 -3.6976 11.6430 -0.6830 22 6 -0.6825 7.2219 0.0017 23 8 1.4263 2.3958 0.0054 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.1528 0.6456 -0.0005 28 1 4.5513 3.3009 -0.0009 29 1 0.0717 4.6275 0.0011 30 1 2.5773 7.5295 0.0022 31 1 0.3413 12.1814 0.0132 32 1 -1.6322 6.7077 0.0017 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142461202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:14 Heat of formation + Delta-G solvation = 10.254654 kcal Electronic energy + Delta-G solvation = -20253.741660 eV Core-core repulsion = 16797.194556 eV Total energy + Delta-G solvation = -3456.547104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.80589 -41.71355 -40.19004 -39.42260 -36.06698 -35.05517 -34.21591 -32.31478 -30.95672 -29.53756 -28.09643 -26.76009 -24.21103 -23.04902 -22.84700 -21.67993 -21.22273 -19.96355 -19.38588 -18.53180 -18.12370 -17.43631 -16.98369 -16.35702 -16.35109 -15.92448 -15.62701 -15.42320 -14.97241 -14.89562 -14.26445 -14.05054 -13.94940 -13.47936 -13.35512 -13.00283 -12.92280 -12.87469 -12.49735 -12.08248 -11.94102 -11.17877 -11.08946 -11.04838 -10.84196 -10.12601 -9.22837 -8.55400 -8.47734 -6.25564 -0.05803 1.10437 1.22223 1.36253 1.40656 1.58742 1.71955 1.95451 2.01247 2.14523 2.33418 2.55713 2.91060 3.08452 3.76517 3.85813 4.24547 4.28906 4.34624 4.40857 4.52816 4.59133 4.69783 4.87259 4.98109 5.00838 5.24279 5.26779 5.34016 5.48313 5.93577 6.07540 6.27065 6.59868 6.70784 7.17435 7.43384 7.64352 8.51644 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.040620 B = 0.003408 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.157429 B = 8213.463604 C = 8887.464178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.264 6.264 3 C 0.214 3.786 4 C -0.239 4.239 5 C -0.077 4.077 6 C -0.114 4.114 7 C 0.590 3.410 8 O -0.555 6.555 9 N -0.606 5.606 10 C -0.051 4.051 11 C -0.055 4.055 12 N -0.308 5.308 13 N -0.165 5.165 14 C -0.354 4.354 15 H 0.142 0.858 16 C -0.006 4.006 17 N -0.823 5.823 18 Si 1.021 2.979 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.244 1.244 22 C -0.077 4.077 23 O -0.192 6.192 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.140 0.860 27 H 0.191 0.809 28 H 0.176 0.824 29 H 0.418 0.582 30 H 0.171 0.829 31 H 0.277 0.723 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 -20.385 -0.018 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.178 6.178 3 C 0.116 3.884 4 C -0.258 4.258 5 C -0.098 4.098 6 C -0.165 4.165 7 C 0.379 3.621 8 O -0.436 6.436 9 N -0.249 5.249 10 C -0.157 4.157 11 C -0.230 4.230 12 N -0.140 5.140 13 N 0.066 4.934 14 C -0.485 4.485 15 H 0.160 0.840 16 C -0.218 4.218 17 N -0.451 5.451 18 Si 0.840 3.160 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.167 1.167 22 C -0.228 4.228 23 O -0.092 6.092 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.158 0.842 27 H 0.208 0.792 28 H 0.193 0.807 29 H 0.255 0.745 30 H 0.188 0.812 31 H 0.087 0.913 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.117 -18.518 -0.025 18.639 hybrid contribution -0.764 -0.468 0.025 0.896 sum -2.882 -18.986 0.000 19.203 Atomic orbital electron populations 1.23507 0.74766 1.07056 1.03121 1.86425 1.25025 1.17595 1.88796 1.21110 0.90039 0.78306 0.98905 1.21077 0.92586 0.96540 1.15642 1.22245 0.97594 0.93335 0.96595 1.21456 0.87939 0.85987 1.21095 1.16558 0.82779 0.84819 0.77938 1.90777 1.45225 1.54336 1.53259 1.42269 1.07688 1.04532 1.70378 1.17313 0.92796 0.83422 1.22174 1.24197 1.00173 0.89669 1.08934 1.78162 0.87271 1.21070 1.27488 1.44867 1.04556 1.03891 1.40059 1.20662 0.87792 0.86069 1.54003 0.84028 1.26906 1.00008 1.00854 0.94053 1.70392 1.19258 1.18418 1.36986 0.84569 0.76685 0.75541 0.79249 1.18877 1.20193 1.16689 1.21961 0.98277 0.84605 1.17929 1.83909 1.37640 1.14442 1.73237 0.91457 0.91456 0.84189 0.79219 0.80689 0.74486 0.81211 0.91293 0.79427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.74 113.37 1.22 1.31 16 2 O -0.26 -4.48 10.55 -64.51 -0.68 -5.16 16 3 C 0.21 4.55 7.86 67.32 0.53 5.08 16 4 C -0.24 -4.83 10.89 22.18 0.24 -4.59 16 5 C -0.08 -1.93 10.66 22.58 0.24 -1.69 16 6 C -0.11 -3.40 7.15 24.22 0.17 -3.22 16 7 C 0.59 22.35 7.74 86.29 0.67 23.02 16 8 O -0.55 -25.06 14.01 -4.64 -0.06 -25.13 16 9 N -0.61 -22.59 5.46 -307.94 -1.68 -24.27 16 10 C -0.05 -2.41 6.90 37.75 0.26 -2.15 16 11 C -0.05 -3.02 10.85 85.42 0.93 -2.09 16 12 N -0.31 -18.73 10.40 -56.46 -0.59 -19.32 16 13 N -0.17 -9.23 3.74 -190.00 -0.71 -9.94 16 14 C -0.35 -18.74 10.25 84.02 0.86 -17.88 16 15 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 16 C -0.01 -0.33 5.50 84.95 0.47 0.14 16 17 N -0.82 -47.52 11.81 21.66 0.26 -47.27 16 18 Si 1.02 38.37 29.55 68.60 2.03 40.39 16 19 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 20 H -0.28 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.24 -8.28 7.11 99.48 0.71 -7.57 16 22 C -0.08 -3.62 11.50 83.38 0.96 -2.66 16 23 O -0.19 -4.76 9.88 13.50 0.13 -4.63 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 29 H 0.42 12.21 8.57 -92.70 -0.79 11.42 16 30 H 0.17 9.41 5.91 -2.91 -0.02 9.39 16 31 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.19 6.90 8.06 -2.91 -0.02 6.88 16 Total: -1.00 -75.20 295.97 5.62 -69.58 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.39 Total: 30.48 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: 6.54 Total: -4.73 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -2.72 Total: -100.80 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -0.61 Total: -34.92 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.39 kcal Total: -75.20 5.62 -69.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142461202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.832 kcal (2) G-P(sol) polarization free energy of solvation -75.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds