Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36819 * 120.00142 * 2 1 4 4 H 1.08004 * 120.00209 * 209.32707 * 3 2 1 5 5 C 1.39069 * 120.00363 * 29.32616 * 3 2 1 6 6 N 1.31353 * 120.00315 * 211.37768 * 5 3 2 7 7 Si 1.86801 * 119.99620 * 31.37589 * 5 3 2 8 8 H 1.48503 * 109.46982 * 94.81068 * 7 5 3 9 9 H 1.48507 * 109.47124 * 214.81297 * 7 5 3 10 10 H 1.48502 * 109.47388 * 334.81148 * 7 5 3 11 11 C 1.34775 * 119.99948 * 180.27867 * 2 1 3 12 12 O 1.21601 * 120.00338 * 184.20428 * 11 2 1 13 13 C 1.47747 * 119.99966 * 4.19838 * 11 2 1 14 14 C 1.39400 * 119.56380 * 185.54602 * 13 11 2 15 15 C 1.38607 * 119.23335 * 179.75067 * 14 13 11 16 16 C 1.38661 * 118.35874 * 0.49923 * 15 14 13 17 17 C 1.40109 * 119.50901 * 359.77544 * 16 15 14 18 18 N 1.31775 * 120.52885 * 359.96169 * 17 16 15 19 19 N 1.39750 * 118.97019 * 179.91336 * 17 16 15 20 20 C 1.35011 * 119.10968 * 15.41531 * 19 17 16 21 21 O 1.21282 * 120.05008 * 181.72153 * 20 19 17 22 22 C 1.50738 * 119.89936 * 1.69756 * 20 19 17 23 23 O 1.35684 * 120.78968 * 179.81214 * 16 15 14 24 24 H 1.09001 * 109.47127 * 356.26109 * 1 2 3 25 25 H 1.08992 * 109.47529 * 116.26340 * 1 2 3 26 26 H 1.09002 * 109.46648 * 236.26947 * 1 2 3 27 27 H 0.97000 * 119.99255 * 179.97438 * 6 5 3 28 28 H 1.07994 * 120.38637 * 0.02562 * 14 13 11 29 29 H 1.07996 * 120.82317 * 180.25151 * 15 14 13 30 30 H 0.96998 * 120.44580 * 195.39461 * 19 17 16 31 31 H 1.09003 * 109.44656 * 88.74959 * 22 20 19 32 32 H 1.09000 * 109.45189 * 208.67391 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1253 1.2448 -0.4581 5 6 1.5875 2.3121 0.5899 6 7 1.8583 3.5062 0.1142 7 14 0.4481 2.1281 2.0586 8 1 1.2268 2.2906 3.3126 9 1 -0.6119 3.1663 1.9960 10 1 -0.1765 0.7810 2.0349 11 6 2.1388 -1.1672 -0.0057 12 8 3.3524 -1.1691 0.0715 13 6 1.4031 -2.4445 -0.1056 14 6 2.0968 -3.6484 0.0060 15 6 1.3990 -4.8427 -0.0835 16 6 0.0292 -4.7910 -0.2926 17 6 -0.6058 -3.5468 -0.4017 18 7 0.0880 -2.4306 -0.3064 19 7 -1.9865 -3.5079 -0.6142 20 6 -2.7159 -4.6234 -0.3987 21 8 -3.9106 -4.6176 -0.6077 22 6 -2.0431 -5.8761 0.1014 23 8 -0.7017 -5.9298 -0.3918 24 1 -0.3633 1.0255 0.0670 25 1 -0.3634 -0.4547 -0.9215 26 1 -0.3633 -0.5707 0.8547 27 1 1.4662 4.2923 0.5255 28 1 3.1650 -3.6507 0.1649 29 1 1.9101 -5.7901 0.0034 30 1 -2.4150 -2.6904 -0.9123 31 1 -2.0292 -5.8701 1.1914 32 1 -2.5940 -6.7488 -0.2493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155731361.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -21.438937 kcal Electronic energy + Delta-G solvation = -21310.051167 eV Core-core repulsion = 17852.129725 eV Total energy + Delta-G solvation = -3457.921442 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.74781 -39.74920 -38.61291 -37.63200 -35.44119 -34.86997 -32.58924 -31.83568 -30.27956 -28.24909 -26.48815 -25.69083 -23.93193 -23.71752 -21.10619 -19.47072 -18.89518 -18.29568 -17.33678 -17.20269 -16.71148 -15.91105 -15.73972 -15.53977 -15.02621 -14.82263 -14.67185 -13.93529 -13.68568 -13.56565 -13.08164 -13.03788 -12.67659 -12.33168 -12.32179 -11.80148 -11.61372 -10.98266 -10.86687 -10.60979 -10.53197 -9.87589 -9.60872 -9.50008 -9.17778 -8.63224 -8.18497 -7.92703 -6.70788 -4.00720 0.65045 1.05666 1.97788 2.39735 2.91352 3.00751 3.13009 3.18070 3.33545 3.55574 3.99172 4.11659 4.23165 4.33977 4.58363 4.73179 4.80744 4.87590 5.13573 5.31094 5.42361 5.71862 5.98040 6.11269 6.18963 6.32908 6.35027 6.42972 6.60327 6.95699 7.26562 7.46442 7.79176 8.07354 8.31390 8.77317 9.11815 9.64773 10.38527 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.005682 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.415477 B = 4926.783418 C = 5790.396859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.421 5.421 3 C -0.314 4.314 4 H 0.114 0.886 5 C 0.066 3.934 6 N -0.828 5.828 7 Si 0.859 3.141 8 H -0.276 1.276 9 H -0.279 1.279 10 H -0.246 1.246 11 C 0.475 3.525 12 O -0.572 6.572 13 C 0.126 3.874 14 C -0.117 4.117 15 C -0.069 4.069 16 C 0.023 3.977 17 C 0.299 3.701 18 N -0.464 5.464 19 N -0.644 5.644 20 C 0.499 3.501 21 O -0.511 6.511 22 C 0.049 3.951 23 O -0.297 6.297 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.280 0.720 28 H 0.158 0.842 29 H 0.152 0.848 30 H 0.421 0.579 31 H 0.101 0.899 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.428 -16.090 1.249 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.137 5.137 3 C -0.441 4.441 4 H 0.132 0.868 5 C -0.144 4.144 6 N -0.462 5.462 7 Si 0.684 3.316 8 H -0.203 1.203 9 H -0.204 1.204 10 H -0.170 1.170 11 C 0.264 3.736 12 O -0.457 6.457 13 C -0.012 4.012 14 C -0.139 4.139 15 C -0.095 4.095 16 C -0.027 4.027 17 C 0.065 3.935 18 N -0.183 5.183 19 N -0.294 5.294 20 C 0.285 3.715 21 O -0.385 6.385 22 C -0.029 4.029 23 O -0.211 6.211 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.176 0.824 29 H 0.170 0.830 30 H 0.261 0.739 31 H 0.119 0.881 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.868 -15.382 1.067 17.310 hybrid contribution -0.644 0.002 0.809 1.034 sum -8.512 -15.380 1.875 17.678 Atomic orbital electron populations 1.22266 0.81459 1.00163 1.01519 1.43706 1.05412 1.05362 1.59193 1.19256 1.05417 0.83111 1.36311 0.86810 1.25383 0.97061 0.94509 0.97482 1.69864 1.41173 0.98828 1.36289 0.87362 0.80536 0.79905 0.83836 1.20263 1.20448 1.16974 1.17336 0.86983 0.81868 0.87367 1.90670 1.12493 1.85532 1.57007 1.21503 0.87201 0.96036 0.96502 1.21948 1.02453 0.90171 0.99292 1.20915 0.90476 0.99864 0.98286 1.19450 0.92553 0.84088 1.06585 1.18673 0.85073 0.89597 1.00132 1.67658 1.08792 1.26910 1.14920 1.43600 1.05147 1.15295 1.65347 1.21503 0.87412 0.85242 0.77350 1.90821 1.14184 1.83911 1.49546 1.23235 0.81355 0.96974 1.01308 1.86179 1.23811 1.31867 1.79210 0.92457 0.91575 0.92512 0.90991 0.82421 0.82998 0.73856 0.88135 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.84 6.74 59.85 0.40 2.24 16 2 N -0.42 -10.22 2.69 -123.32 -0.33 -10.55 16 3 C -0.31 -8.60 9.41 -15.02 -0.14 -8.74 16 4 H 0.11 3.47 7.78 -52.48 -0.41 3.06 16 5 C 0.07 1.74 4.97 -17.45 -0.09 1.65 16 6 N -0.83 -22.58 13.95 55.50 0.77 -21.81 16 7 Si 0.86 19.25 26.22 -169.99 -4.46 14.79 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.25 -5.18 4.73 56.52 0.27 -4.91 16 11 C 0.47 11.13 7.59 -12.37 -0.09 11.04 16 12 O -0.57 -15.04 16.11 5.28 0.09 -14.96 16 13 C 0.13 2.33 6.64 -83.03 -0.55 1.78 16 14 C -0.12 -1.75 9.62 -39.01 -0.38 -2.13 16 15 C -0.07 -0.83 10.12 -39.29 -0.40 -1.23 16 16 C 0.02 0.29 6.46 -38.72 -0.25 0.04 16 17 C 0.30 4.26 7.60 -154.45 -1.17 3.08 16 18 N -0.46 -7.85 6.05 -8.72 -0.05 -7.91 16 19 N -0.64 -8.10 5.49 -11.13 -0.06 -8.16 16 20 C 0.50 5.86 7.93 -10.86 -0.09 5.78 16 21 O -0.51 -7.30 17.94 5.56 0.10 -7.20 16 22 C 0.05 0.42 7.17 36.02 0.26 0.68 16 23 O -0.30 -3.21 10.45 -18.76 -0.20 -3.40 16 24 H 0.06 1.19 4.84 -51.93 -0.25 0.94 16 25 H 0.07 1.24 6.84 -51.93 -0.35 0.89 16 26 H 0.06 1.11 6.22 -51.93 -0.32 0.79 16 27 H 0.28 6.98 8.31 -40.82 -0.34 6.65 16 28 H 0.16 2.28 7.63 -52.49 -0.40 1.88 16 29 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.42 5.01 8.94 -40.82 -0.36 4.64 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.15 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 276.99 15.07 4.17 4.17 Total: -1.00 -31.84 276.99 -5.10 -36.94 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -2.64 Total: 3.89 kcal Atomic # 6 Polarization: 16.69 SS G_CDS: -2.49 Total: 14.20 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.33 Total: -48.43 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.01 Total: -25.56 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.46 Total: 14.79 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.84 -5.10 -36.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155731361.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.499 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds