Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36819 * 120.00142 * 2 1 4 4 H 1.08004 * 120.00209 * 209.32707 * 3 2 1 5 5 C 1.39069 * 120.00363 * 29.32616 * 3 2 1 6 6 N 1.31353 * 120.00315 * 211.37768 * 5 3 2 7 7 Si 1.86801 * 119.99620 * 31.37589 * 5 3 2 8 8 H 1.48503 * 109.46982 * 94.81068 * 7 5 3 9 9 H 1.48507 * 109.47124 * 214.81297 * 7 5 3 10 10 H 1.48502 * 109.47388 * 334.81148 * 7 5 3 11 11 C 1.34775 * 119.99948 * 180.27867 * 2 1 3 12 12 O 1.21601 * 120.00338 * 184.20428 * 11 2 1 13 13 C 1.47747 * 119.99966 * 4.19838 * 11 2 1 14 14 C 1.39400 * 119.56380 * 185.54602 * 13 11 2 15 15 C 1.38607 * 119.23335 * 179.75067 * 14 13 11 16 16 C 1.38661 * 118.35874 * 0.49923 * 15 14 13 17 17 C 1.40109 * 119.50901 * 359.77544 * 16 15 14 18 18 N 1.31775 * 120.52885 * 359.96169 * 17 16 15 19 19 N 1.39750 * 118.97019 * 179.91336 * 17 16 15 20 20 C 1.35011 * 119.10968 * 15.41531 * 19 17 16 21 21 O 1.21282 * 120.05008 * 181.72153 * 20 19 17 22 22 C 1.50738 * 119.89936 * 1.69756 * 20 19 17 23 23 O 1.35684 * 120.78968 * 179.81214 * 16 15 14 24 24 H 1.09001 * 109.47127 * 356.26109 * 1 2 3 25 25 H 1.08992 * 109.47529 * 116.26340 * 1 2 3 26 26 H 1.09002 * 109.46648 * 236.26947 * 1 2 3 27 27 H 0.97000 * 119.99255 * 179.97438 * 6 5 3 28 28 H 1.07994 * 120.38637 * 0.02562 * 14 13 11 29 29 H 1.07996 * 120.82317 * 180.25151 * 15 14 13 30 30 H 0.96998 * 120.44580 * 195.39461 * 19 17 16 31 31 H 1.09003 * 109.44656 * 88.74959 * 22 20 19 32 32 H 1.09000 * 109.45189 * 208.67391 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1253 1.2448 -0.4581 5 6 1.5875 2.3121 0.5899 6 7 1.8583 3.5062 0.1142 7 14 0.4481 2.1281 2.0586 8 1 1.2268 2.2906 3.3126 9 1 -0.6119 3.1663 1.9960 10 1 -0.1765 0.7810 2.0349 11 6 2.1388 -1.1672 -0.0057 12 8 3.3524 -1.1691 0.0715 13 6 1.4031 -2.4445 -0.1056 14 6 2.0968 -3.6484 0.0060 15 6 1.3990 -4.8427 -0.0835 16 6 0.0292 -4.7910 -0.2926 17 6 -0.6058 -3.5468 -0.4017 18 7 0.0880 -2.4306 -0.3064 19 7 -1.9865 -3.5079 -0.6142 20 6 -2.7159 -4.6234 -0.3987 21 8 -3.9106 -4.6176 -0.6077 22 6 -2.0431 -5.8761 0.1014 23 8 -0.7017 -5.9298 -0.3918 24 1 -0.3633 1.0255 0.0670 25 1 -0.3634 -0.4547 -0.9215 26 1 -0.3633 -0.5707 0.8547 27 1 1.4662 4.2923 0.5255 28 1 3.1650 -3.6507 0.1649 29 1 1.9101 -5.7901 0.0034 30 1 -2.4150 -2.6904 -0.9123 31 1 -2.0292 -5.8701 1.1914 32 1 -2.5940 -6.7488 -0.2493 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155731361.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = -46.177590 kcal Electronic energy + Delta-G solvation = -21311.123916 eV Core-core repulsion = 17852.129725 eV Total energy + Delta-G solvation = -3458.994190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.79459 -41.09177 -39.91252 -38.88426 -36.94668 -36.31669 -34.34825 -33.17249 -31.41277 -29.24247 -28.20838 -27.32344 -25.26023 -24.85719 -22.41790 -20.71621 -19.99556 -19.41002 -19.10987 -18.30017 -18.13040 -17.45100 -17.09972 -16.71636 -16.29050 -16.00358 -15.81126 -15.63141 -14.93473 -14.82254 -14.55839 -14.30239 -14.19388 -13.94373 -13.88550 -13.33286 -12.71006 -12.58354 -12.49032 -12.09046 -11.62347 -11.52004 -11.13489 -11.06006 -10.60242 -10.30042 -9.87288 -9.27462 -8.67240 -6.09221 -0.52842 -0.04485 1.01157 1.22120 1.33034 1.41348 1.42214 1.81989 2.02498 2.13529 2.51565 2.61334 2.75291 2.98660 3.15073 3.55415 3.90055 3.98887 4.07902 4.16182 4.39996 4.46528 4.62560 4.73056 4.86603 4.97286 5.18668 5.26313 5.34671 5.45891 5.94995 5.98061 6.35026 6.51386 6.63999 6.84738 7.19981 7.77030 8.48171 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.023735 B = 0.005682 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.415477 B = 4926.783418 C = 5790.396859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.442 5.442 3 C -0.349 4.349 4 H 0.057 0.943 5 C 0.028 3.972 6 N -0.879 5.879 7 Si 0.925 3.075 8 H -0.284 1.284 9 H -0.264 1.264 10 H -0.224 1.224 11 C 0.481 3.519 12 O -0.610 6.610 13 C 0.093 3.907 14 C -0.104 4.104 15 C -0.051 4.051 16 C 0.052 3.948 17 C 0.293 3.707 18 N -0.475 5.475 19 N -0.646 5.646 20 C 0.499 3.501 21 O -0.538 6.538 22 C 0.051 3.949 23 O -0.289 6.289 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.286 0.714 28 H 0.161 0.839 29 H 0.198 0.802 30 H 0.421 0.579 31 H 0.131 0.869 32 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 -20.395 2.323 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.159 5.159 3 C -0.476 4.476 4 H 0.075 0.925 5 C -0.178 4.178 6 N -0.513 5.513 7 Si 0.746 3.254 8 H -0.211 1.211 9 H -0.188 1.188 10 H -0.147 1.147 11 C 0.272 3.728 12 O -0.496 6.496 13 C -0.044 4.044 14 C -0.126 4.126 15 C -0.077 4.077 16 C 0.001 3.999 17 C 0.058 3.942 18 N -0.194 5.194 19 N -0.296 5.296 20 C 0.287 3.713 21 O -0.413 6.413 22 C -0.026 4.026 23 O -0.202 6.202 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.178 0.822 29 H 0.215 0.785 30 H 0.261 0.739 31 H 0.149 0.851 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.243 -19.699 2.131 22.305 hybrid contribution 0.031 0.918 0.355 0.985 sum -10.212 -18.781 2.487 21.522 Atomic orbital electron populations 1.22296 0.79267 1.00099 1.02793 1.43715 1.06661 1.04555 1.61019 1.18767 1.04472 0.85500 1.38878 0.92477 1.26045 0.98929 0.93618 0.99234 1.69931 1.43767 0.99749 1.37897 0.86351 0.78761 0.81277 0.78980 1.21118 1.18814 1.14692 1.18154 0.86872 0.83420 0.84396 1.90621 1.14636 1.86853 1.57533 1.20759 0.88081 0.94457 1.01122 1.22039 1.02690 0.90019 0.97894 1.21266 0.90060 1.00246 0.96122 1.19603 0.93009 0.84141 1.03104 1.18785 0.85539 0.89563 1.00276 1.67353 1.08229 1.28771 1.15012 1.43727 1.04570 1.15986 1.65341 1.22134 0.87106 0.85690 0.76370 1.90825 1.15485 1.84318 1.50670 1.23640 0.79638 0.96237 1.03065 1.86216 1.24726 1.30274 1.78988 0.93043 0.90225 0.91167 0.90433 0.82184 0.78499 0.73879 0.85097 0.80182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 4.01 6.74 127.77 0.86 4.87 16 2 N -0.44 -22.30 2.69 -662.33 -1.78 -24.08 16 3 C -0.35 -20.50 9.41 84.11 0.79 -19.71 16 4 H 0.06 3.87 7.78 -2.91 -0.02 3.85 16 5 C 0.03 1.56 4.97 84.96 0.42 1.98 16 6 N -0.88 -50.70 13.95 21.68 0.30 -50.39 16 7 Si 0.93 40.60 26.22 68.60 1.80 42.40 16 8 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 9 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.22 -8.91 4.73 99.48 0.47 -8.44 16 11 C 0.48 23.24 7.59 86.76 0.66 23.90 16 12 O -0.61 -33.62 16.11 -4.04 -0.07 -33.68 16 13 C 0.09 3.33 6.64 41.76 0.28 3.61 16 14 C -0.10 -2.85 9.62 22.64 0.22 -2.63 16 15 C -0.05 -0.97 10.12 22.46 0.23 -0.74 16 16 C 0.05 1.05 6.46 22.83 0.15 1.19 16 17 C 0.29 7.33 7.60 133.23 1.01 8.35 16 18 N -0.47 -15.13 6.05 -181.50 -1.10 -16.23 16 19 N -0.65 -14.21 5.49 -307.38 -1.69 -15.89 16 20 C 0.50 9.73 7.93 87.63 0.69 10.42 16 21 O -0.54 -13.69 17.94 -3.03 -0.05 -13.74 16 22 C 0.05 0.57 7.17 71.25 0.51 1.08 16 23 O -0.29 -4.43 10.45 -90.03 -0.94 -5.37 16 24 H 0.05 2.13 4.84 -2.39 -0.01 2.12 16 25 H 0.08 2.97 6.84 -2.39 -0.02 2.96 16 26 H 0.07 2.64 6.22 -2.39 -0.01 2.62 16 27 H 0.29 14.95 8.31 -92.71 -0.77 14.18 16 28 H 0.16 4.32 7.63 -2.91 -0.02 4.30 16 29 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.42 9.10 8.94 -92.71 -0.83 8.27 16 31 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.18 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -75.67 276.99 2.43 -73.24 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.14 Total: 11.44 kcal Atomic # 6 Polarization: 26.49 SS G_CDS: 5.82 Total: 32.31 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -4.26 Total: -106.60 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -1.06 Total: -52.79 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.80 Total: 42.40 kcal Total: -75.67 2.43 -73.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155731361.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.064 kcal (2) G-P(sol) polarization free energy of solvation -75.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds