Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86806 * 119.99628 * 2 1 4 4 H 1.48500 * 109.47033 * 269.99992 * 3 2 1 5 5 H 1.48498 * 109.47013 * 30.00109 * 3 2 1 6 6 H 1.48500 * 109.46862 * 150.00112 * 3 2 1 7 7 C 1.39916 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99922 * 162.75870 * 7 2 1 9 9 C 1.41324 * 120.00071 * 343.03914 * 7 2 1 10 10 C 1.40824 * 120.22635 * 334.50478 * 9 7 2 11 11 C 1.37537 * 119.90859 * 179.71666 * 10 9 7 12 12 C 1.38668 * 120.38462 * 0.56291 * 11 10 9 13 13 C 1.39055 * 120.46546 * 359.71286 * 12 11 10 14 14 N 1.39887 * 119.95815 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.53002 * 109.46892 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46779 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.47201 * 59.99852 * 17 16 15 19 19 F 1.39899 * 109.46974 * 180.02562 * 17 16 15 20 20 F 1.39904 * 109.46743 * 299.99722 * 17 16 15 21 21 C 1.38627 * 120.07918 * 0.02562 * 13 12 11 22 22 F 1.35104 * 120.19116 * 179.97438 * 21 13 12 23 23 H 0.96997 * 120.00246 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.04564 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.80887 * 180.27511 * 11 10 9 26 26 H 1.08001 * 119.76512 * 179.73987 * 12 11 10 27 27 H 0.96997 * 119.99537 * 180.02562 * 14 13 12 28 28 H 1.08992 * 109.46798 * 299.99971 * 15 14 13 29 29 H 1.08997 * 109.46821 * 60.00322 * 15 14 13 30 30 H 1.09002 * 109.46900 * 299.99959 * 16 15 14 31 31 H 1.08996 * 109.47024 * 59.99693 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4403 0.7000 7 6 2.0082 -1.2117 0.0005 8 1 3.0518 -1.2327 -0.2767 9 6 1.3477 -2.4088 0.3581 10 6 0.2182 -2.3717 1.1984 11 6 -0.4230 -3.5402 1.5375 12 6 0.0430 -4.7582 1.0661 13 6 1.1603 -4.8138 0.2402 14 7 1.6215 -6.0484 -0.2288 15 6 0.9272 -7.2816 0.1498 16 6 1.6299 -8.4799 -0.4916 17 6 0.9044 -9.7678 -0.0967 18 9 -0.4209 -9.7115 -0.5412 19 9 1.5472 -10.8635 -0.6827 20 9 0.9240 -9.9059 1.2953 21 6 1.8181 -3.6474 -0.1182 22 9 2.9042 -3.6988 -0.9201 23 1 -0.4850 0.8400 0.0004 24 1 -0.1465 -1.4265 1.5726 25 1 -1.2917 -3.5094 2.1784 26 1 -0.4658 -5.6700 1.3421 27 1 2.4011 -6.0878 -0.8047 28 1 0.9433 -7.3892 1.2342 29 1 -0.1056 -7.2378 -0.1959 30 1 1.6143 -8.3724 -1.5762 31 1 2.6626 -8.5234 -0.1457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161824264.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -192.076825 kcal Electronic energy + Delta-G solvation = -20840.516220 eV Core-core repulsion = 16813.418663 eV Total energy + Delta-G solvation = -4027.097558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.25841 -47.76927 -47.71665 -47.13980 -37.85090 -35.82559 -33.65786 -31.77447 -29.57326 -27.72978 -25.42825 -24.84261 -22.50289 -20.74127 -20.50864 -18.70880 -18.54142 -17.88222 -17.07901 -16.04056 -15.84201 -15.33904 -15.06607 -14.70951 -14.59132 -14.34920 -14.14873 -13.93857 -13.89655 -13.84611 -13.67954 -13.17661 -12.89492 -12.21162 -12.18117 -11.97559 -11.82915 -11.53364 -11.14776 -11.02798 -10.82624 -10.51831 -9.91235 -9.59399 -9.39602 -8.92764 -7.42531 -6.85980 -6.38093 -4.44259 2.54621 2.69110 2.95540 3.04711 3.09216 3.19023 3.48921 3.80100 3.88034 3.89116 4.28916 4.55584 4.72008 4.81368 5.15804 5.52714 5.74227 5.74937 5.92073 6.17366 6.60973 6.79867 6.91438 7.12853 7.18015 7.52101 7.67709 7.97038 8.05629 8.23101 8.34494 8.58318 8.74957 8.89994 10.10081 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.043398 B = 0.003627 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.029197 B = 7718.872321 C = 8110.931749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.453 4.453 8 H 0.082 0.918 9 C 0.118 3.882 10 C -0.180 4.180 11 C -0.078 4.078 12 C -0.285 4.285 13 C 0.202 3.798 14 N -0.759 5.759 15 C 0.136 3.864 16 C -0.180 4.180 17 C 0.459 3.541 18 F -0.181 7.181 19 F -0.186 7.186 20 F -0.182 7.182 21 C -0.095 4.095 22 F -0.167 7.167 23 H 0.282 0.718 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.394 0.606 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.114 0.886 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 -12.349 0.058 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.114 3.886 10 C -0.200 4.200 11 C -0.097 4.097 12 C -0.308 4.308 13 C 0.104 3.896 14 N -0.394 5.394 15 C 0.011 3.989 16 C -0.219 4.219 17 C 0.405 3.595 18 F -0.163 7.163 19 F -0.167 7.167 20 F -0.163 7.163 21 C -0.119 4.119 22 F -0.147 7.147 23 H 0.093 0.907 24 H 0.140 0.860 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.228 0.772 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.658 -12.330 0.115 12.348 hybrid contribution 0.618 0.425 -0.389 0.845 sum 1.276 -11.904 -0.273 11.976 Atomic orbital electron populations 1.69841 1.07622 1.29492 1.34066 1.25916 0.94748 1.01435 0.92034 0.86255 0.80662 0.80186 0.79355 1.19374 1.19955 1.18314 1.19506 0.98119 0.90877 1.39643 0.90029 1.17410 0.91719 0.90294 0.89209 1.21040 0.99416 0.97162 1.02416 1.20482 0.98021 0.92540 0.98629 1.19754 1.02112 0.97227 1.11748 1.17361 0.94222 0.82875 0.95191 1.44082 1.34651 1.02350 1.58325 1.20957 0.96123 0.82589 0.99246 1.23052 1.02204 0.91034 1.05589 1.20358 0.77806 0.86544 0.74817 1.93203 1.37317 1.96606 1.89149 1.93187 1.81546 1.57807 1.84169 1.93202 1.96376 1.96451 1.30283 1.17256 0.93908 0.93299 1.07463 1.91204 1.53459 1.97154 1.72858 0.90657 0.85997 0.88817 0.88644 0.77183 0.91646 0.91632 0.86766 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.88 10.97 55.55 0.61 -19.27 16 2 C 0.08 1.93 5.15 -17.34 -0.09 1.84 16 3 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.45 -12.11 8.78 -37.78 -0.33 -12.44 16 8 H 0.08 2.16 7.74 -52.49 -0.41 1.75 16 9 C 0.12 3.15 5.57 -106.78 -0.59 2.55 16 10 C -0.18 -4.57 8.68 -38.86 -0.34 -4.91 16 11 C -0.08 -1.76 10.01 -39.68 -0.40 -2.16 16 12 C -0.29 -6.17 9.32 -39.12 -0.36 -6.54 16 13 C 0.20 4.47 6.65 -83.74 -0.56 3.91 16 14 N -0.76 -13.12 5.74 -58.61 -0.34 -13.46 16 15 C 0.14 1.85 4.67 -4.04 -0.02 1.83 16 16 C -0.18 -1.77 5.37 -26.73 -0.14 -1.92 16 17 C 0.46 4.82 3.16 37.16 0.12 4.94 16 18 F -0.18 -2.10 16.80 2.25 0.04 -2.07 16 19 F -0.19 -1.96 17.32 2.25 0.04 -1.92 16 20 F -0.18 -2.09 16.80 2.25 0.04 -2.05 16 21 C -0.10 -2.39 7.31 -38.47 -0.28 -2.67 16 22 F -0.17 -4.12 16.08 2.25 0.04 -4.08 16 23 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 24 H 0.12 3.16 6.20 -52.49 -0.33 2.84 16 25 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 26 H 0.10 1.82 6.70 -52.49 -0.35 1.47 16 27 H 0.39 6.33 7.95 -40.82 -0.32 6.01 16 28 H 0.07 0.90 7.60 -51.93 -0.39 0.51 16 29 H 0.07 0.92 7.60 -51.93 -0.39 0.52 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 285.71 15.07 4.31 4.31 Total: -1.00 -27.80 285.71 -5.90 -33.69 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -2.60 Total: 6.99 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -3.00 Total: -15.56 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.27 Total: -32.73 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 0.15 Total: -10.12 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.80 -5.90 -33.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161824264.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.382 kcal (2) G-P(sol) polarization free energy of solvation -27.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds