Wall clock time and date at job start Mon Mar 30 2020 01:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86806 * 119.99628 * 2 1 4 4 H 1.48500 * 109.47033 * 269.99992 * 3 2 1 5 5 H 1.48498 * 109.47013 * 30.00109 * 3 2 1 6 6 H 1.48500 * 109.46862 * 150.00112 * 3 2 1 7 7 C 1.39916 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99922 * 162.75870 * 7 2 1 9 9 C 1.41324 * 120.00071 * 343.03914 * 7 2 1 10 10 C 1.40824 * 120.22635 * 334.50478 * 9 7 2 11 11 C 1.37537 * 119.90859 * 179.71666 * 10 9 7 12 12 C 1.38668 * 120.38462 * 0.56291 * 11 10 9 13 13 C 1.39055 * 120.46546 * 359.71286 * 12 11 10 14 14 N 1.39887 * 119.95815 * 179.97438 * 13 12 11 15 15 C 1.46503 * 120.00061 * 0.02562 * 14 13 12 16 16 C 1.53002 * 109.46892 * 180.02562 * 15 14 13 17 17 C 1.53002 * 109.46779 * 180.02562 * 16 15 14 18 18 F 1.39898 * 109.47201 * 59.99852 * 17 16 15 19 19 F 1.39899 * 109.46974 * 180.02562 * 17 16 15 20 20 F 1.39904 * 109.46743 * 299.99722 * 17 16 15 21 21 C 1.38627 * 120.07918 * 0.02562 * 13 12 11 22 22 F 1.35104 * 120.19116 * 179.97438 * 21 13 12 23 23 H 0.96997 * 120.00246 * 359.97438 * 1 2 3 24 24 H 1.08002 * 120.04564 * 359.97438 * 10 9 7 25 25 H 1.08002 * 119.80887 * 180.27511 * 11 10 9 26 26 H 1.08001 * 119.76512 * 179.73987 * 12 11 10 27 27 H 0.96997 * 119.99537 * 180.02562 * 14 13 12 28 28 H 1.08992 * 109.46798 * 299.99971 * 15 14 13 29 29 H 1.08997 * 109.46821 * 60.00322 * 15 14 13 30 30 H 1.09002 * 109.46900 * 299.99959 * 16 15 14 31 31 H 1.08996 * 109.47024 * 59.99693 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.4899 2.0465 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5400 1.4403 0.7000 7 6 2.0082 -1.2117 0.0005 8 1 3.0518 -1.2327 -0.2767 9 6 1.3477 -2.4088 0.3581 10 6 0.2182 -2.3717 1.1984 11 6 -0.4230 -3.5402 1.5375 12 6 0.0430 -4.7582 1.0661 13 6 1.1603 -4.8138 0.2402 14 7 1.6215 -6.0484 -0.2288 15 6 0.9272 -7.2816 0.1498 16 6 1.6299 -8.4799 -0.4916 17 6 0.9044 -9.7678 -0.0967 18 9 -0.4209 -9.7115 -0.5412 19 9 1.5472 -10.8635 -0.6827 20 9 0.9240 -9.9059 1.2953 21 6 1.8181 -3.6474 -0.1182 22 9 2.9042 -3.6988 -0.9201 23 1 -0.4850 0.8400 0.0004 24 1 -0.1465 -1.4265 1.5726 25 1 -1.2917 -3.5094 2.1784 26 1 -0.4658 -5.6700 1.3421 27 1 2.4011 -6.0878 -0.8047 28 1 0.9433 -7.3892 1.2342 29 1 -0.1056 -7.2378 -0.1959 30 1 1.6143 -8.3724 -1.5762 31 1 2.6626 -8.5234 -0.1457 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161824264.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:50 Heat of formation + Delta-G solvation = -207.186801 kcal Electronic energy + Delta-G solvation = -20841.171438 eV Core-core repulsion = 16813.418663 eV Total energy + Delta-G solvation = -4027.752775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.11137 -49.05346 -48.61343 -48.58805 -39.53235 -37.31854 -35.35216 -33.08807 -31.43306 -29.26737 -27.26212 -26.07661 -23.60531 -22.50576 -22.15267 -19.55926 -19.52164 -19.32348 -18.37134 -17.79800 -17.46777 -16.84855 -16.37670 -16.22928 -15.84408 -15.55393 -15.26970 -15.18178 -15.00115 -14.90826 -14.73199 -14.71475 -14.57874 -13.71074 -13.58315 -13.34662 -13.07977 -12.90497 -12.88186 -12.64080 -12.39607 -12.11640 -11.76382 -11.41432 -11.15254 -10.59590 -9.31459 -8.69449 -8.05869 -6.40717 0.88496 1.13507 1.38671 1.49901 1.55465 1.66932 2.20561 2.45601 2.70646 2.92709 3.06848 3.13116 3.62954 3.79705 3.97999 4.06934 4.32946 4.48285 4.72171 4.75172 4.83982 5.02004 5.08193 5.27325 5.44535 5.72062 5.87248 6.10089 6.17899 6.43214 6.70382 6.81868 6.85262 7.05890 8.28630 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.043398 B = 0.003627 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.029197 B = 7718.872321 C = 8110.931749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.040 3.960 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.495 4.495 8 H 0.069 0.931 9 C 0.088 3.912 10 C -0.208 4.208 11 C -0.072 4.072 12 C -0.283 4.283 13 C 0.211 3.789 14 N -0.750 5.750 15 C 0.132 3.868 16 C -0.169 4.169 17 C 0.464 3.536 18 F -0.188 7.188 19 F -0.184 7.184 20 F -0.188 7.188 21 C -0.129 4.129 22 F -0.172 7.172 23 H 0.292 0.708 24 H 0.108 0.892 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.400 0.600 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 -13.381 0.152 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.176 4.176 3 Si 0.804 3.196 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.523 4.523 8 H 0.087 0.913 9 C 0.085 3.915 10 C -0.229 4.229 11 C -0.091 4.091 12 C -0.306 4.306 13 C 0.109 3.891 14 N -0.384 5.384 15 C 0.007 3.993 16 C -0.207 4.207 17 C 0.410 3.590 18 F -0.170 7.170 19 F -0.166 7.166 20 F -0.169 7.169 21 C -0.154 4.154 22 F -0.151 7.151 23 H 0.103 0.897 24 H 0.126 0.874 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.235 0.765 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.550 -13.418 0.200 13.430 hybrid contribution 0.599 0.553 -0.414 0.915 sum 1.150 -12.864 -0.215 12.917 Atomic orbital electron populations 1.69870 1.08852 1.30922 1.34202 1.26719 0.95551 1.04343 0.90985 0.85190 0.79132 0.75745 0.79580 1.18738 1.18311 1.18491 1.19677 0.97947 0.92514 1.42199 0.91303 1.17789 0.92653 0.91204 0.89899 1.20988 1.00301 0.97735 1.03864 1.20823 0.98229 0.92033 0.98040 1.20121 1.01716 0.98041 1.10737 1.17454 0.93574 0.83840 0.94206 1.44175 1.34719 1.02027 1.57455 1.21112 0.96224 0.82163 0.99778 1.22967 1.02514 0.88865 1.06382 1.20357 0.77480 0.86730 0.74461 1.93196 1.37931 1.96641 1.89191 1.93194 1.81475 1.57771 1.84116 1.93196 1.96375 1.96501 1.30836 1.17536 0.94774 0.94275 1.08779 1.91171 1.53698 1.97209 1.73052 0.89722 0.87419 0.85957 0.85481 0.76471 0.91398 0.91640 0.85109 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.01 10.97 21.82 0.24 -41.77 16 2 C 0.04 2.05 5.15 85.25 0.44 2.49 16 3 Si 0.98 38.26 29.59 68.60 2.03 40.29 16 4 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 7 C -0.49 -27.54 8.78 23.44 0.21 -27.33 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 9 C 0.09 4.87 5.57 -21.26 -0.12 4.75 16 10 C -0.21 -10.80 8.68 22.74 0.20 -10.60 16 11 C -0.07 -3.21 10.01 22.21 0.22 -2.99 16 12 C -0.28 -11.69 9.32 22.57 0.21 -11.48 16 13 C 0.21 9.10 6.65 38.14 0.25 9.35 16 14 N -0.75 -24.36 5.74 -339.35 -1.95 -26.31 16 15 C 0.13 3.17 4.67 86.38 0.40 3.58 16 16 C -0.17 -2.78 5.37 30.60 0.16 -2.62 16 17 C 0.46 8.49 3.16 71.98 0.23 8.72 16 18 F -0.19 -3.91 16.80 44.97 0.76 -3.16 16 19 F -0.18 -3.41 17.32 44.97 0.78 -2.63 16 20 F -0.19 -3.85 16.80 44.97 0.76 -3.09 16 21 C -0.13 -6.61 7.31 22.99 0.17 -6.44 16 22 F -0.17 -8.64 16.08 44.97 0.72 -7.92 16 23 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 24 H 0.11 5.78 6.20 -2.91 -0.02 5.76 16 25 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 26 H 0.13 4.41 6.70 -2.91 -0.02 4.39 16 27 H 0.40 12.08 7.95 -92.71 -0.74 11.35 16 28 H 0.07 1.65 7.60 -2.39 -0.02 1.64 16 29 H 0.07 1.63 7.60 -2.39 -0.02 1.61 16 30 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.13 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -61.19 285.71 6.16 -55.02 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.46 Total: 22.14 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 2.37 Total: -32.58 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -1.71 Total: -68.07 kcal Atomic # 9 Polarization: -19.82 SS G_CDS: 3.01 Total: -16.80 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 2.03 Total: 40.29 kcal Total: -61.19 6.16 -55.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161824264.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.163 kcal (2) G-P(sol) polarization free energy of solvation -61.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds