Wall clock time and date at job start Mon Mar 30 2020 01:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47315 * 300.00332 * 3 2 1 6 6 H 1.48505 * 109.47148 * 60.00265 * 3 2 1 7 7 C 1.38943 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00089 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00112 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99950 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00154 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47528 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00166 * 290.12592 * 13 12 10 15 15 C 1.54373 * 104.59432 * 200.95781 * 14 13 12 16 16 C 1.54261 * 105.06422 * 23.85103 * 15 14 13 17 17 H 1.08995 * 110.32235 * 240.99669 * 16 15 14 18 18 S 1.81405 * 110.32319 * 118.89568 * 16 15 14 19 19 N 1.65597 * 104.44945 * 62.83093 * 18 16 15 20 20 O 1.42098 * 110.54249 * 311.20339 * 18 16 15 21 21 O 1.42096 * 110.54236 * 174.45428 * 18 16 15 22 22 C 1.48724 * 111.02088 * 174.61585 * 13 12 10 23 23 H 0.96999 * 120.00311 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99587 * 0.02562 * 9 7 2 25 25 H 1.08997 * 109.47497 * 59.99691 * 12 10 9 26 26 H 1.09003 * 109.47230 * 299.99623 * 12 10 9 27 27 H 1.08997 * 110.41096 * 82.17774 * 14 13 12 28 28 H 1.09006 * 110.40639 * 319.73576 * 14 13 12 29 29 H 1.08999 * 110.32628 * 264.95286 * 15 14 13 30 30 H 1.09003 * 110.40761 * 142.79448 * 15 14 13 31 31 H 0.97001 * 120.00224 * 150.00427 * 19 18 16 32 32 H 0.97005 * 120.00050 * 329.72196 * 19 18 16 33 33 H 1.09002 * 110.38320 * 40.24169 * 22 13 12 34 34 H 1.09006 * 110.50730 * 277.75534 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9073 -6.0734 -1.3039 15 6 3.4271 -7.5259 -1.3599 16 6 2.4980 -8.3208 -0.4194 17 1 3.0715 -8.7602 0.3967 18 16 1.6248 -9.6153 -1.3427 19 7 2.8265 -10.6142 -1.8905 20 8 1.0470 -9.0806 -2.5256 21 8 0.8659 -10.4311 -0.4608 22 6 1.4947 -7.2831 0.1281 23 1 -0.4850 0.8400 0.0004 24 1 0.3535 -2.3906 -0.0005 25 1 0.6177 -4.9205 -0.8913 26 1 0.6170 -4.9209 0.8887 27 1 3.7396 -5.3703 -1.3354 28 1 2.2175 -5.8845 -2.1265 29 1 4.4564 -7.5737 -1.0044 30 1 3.3598 -7.9148 -2.3760 31 1 2.6501 -11.5591 -2.0208 32 1 3.7058 -10.2537 -2.0851 33 1 0.5831 -7.2835 -0.4696 34 1 1.2652 -7.4908 1.1732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168214657.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:26 Heat of formation + Delta-G solvation = -97.933356 kcal Electronic energy + Delta-G solvation = -19726.212234 eV Core-core repulsion = 16400.417697 eV Total energy + Delta-G solvation = -3325.794537 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27812 -37.63691 -37.20355 -36.16240 -33.98124 -33.57470 -32.28436 -31.19246 -29.14286 -26.96827 -24.38125 -21.80280 -21.48712 -19.61426 -19.25450 -18.17530 -17.78645 -17.51465 -16.47022 -16.20356 -15.89430 -15.22955 -14.84827 -14.59627 -14.21619 -13.78996 -13.58372 -13.07799 -12.53158 -12.42367 -12.35206 -12.21162 -12.18008 -11.89997 -11.74399 -11.52979 -11.42475 -11.18782 -10.97392 -10.82179 -10.41049 -10.34829 -10.23952 -9.52400 -8.62138 -8.13556 -7.97689 -6.43265 -3.84296 -0.01886 2.57243 3.15270 3.26028 3.32690 3.36992 3.82693 3.88276 3.96556 4.03504 4.23530 4.51741 4.68518 4.98416 5.03622 5.18592 5.22720 5.40062 5.43207 5.52966 5.66599 5.74044 5.77763 5.96403 6.21735 6.27213 6.72805 6.89736 7.03951 7.53850 8.04032 8.59289 9.16155 9.52059 10.03258 10.74513 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.051668 B = 0.003470 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.788009 B = 8068.180939 C = 8269.207382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.028 3.972 13 N -0.474 5.474 14 C 0.034 3.966 15 C -0.102 4.102 16 C -0.587 4.587 17 H 0.150 0.850 18 S 2.616 3.384 19 N -1.250 6.250 20 O -0.956 6.956 21 O -0.964 6.964 22 C 0.053 3.947 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.419 0.581 32 H 0.414 0.586 33 H 0.049 0.951 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.591 -18.666 -2.742 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.104 4.104 13 N -0.198 5.198 14 C -0.094 4.094 15 C -0.141 4.141 16 C -0.698 4.698 17 H 0.168 0.832 18 S 2.707 3.293 19 N -0.923 5.923 20 O -0.945 6.945 21 O -0.954 6.954 22 C -0.077 4.077 23 H 0.081 0.919 24 H 0.226 0.774 25 H 0.074 0.926 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.248 0.752 32 H 0.240 0.760 33 H 0.067 0.933 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.538 -18.384 -2.374 18.871 hybrid contribution 0.008 0.735 -0.459 0.866 sum 3.546 -17.649 -2.833 18.224 Atomic orbital electron populations 1.69619 1.05954 1.28108 1.50543 1.25270 0.95637 0.99752 0.97296 0.85794 0.79679 0.81108 0.77712 1.19223 1.20757 1.20746 1.19744 0.93382 0.82140 1.47569 0.87832 1.41858 1.09235 1.04555 1.64342 1.19589 0.88342 0.84384 0.84642 1.90498 1.13600 1.86940 1.55255 1.22147 0.94351 0.91638 1.02225 1.65250 1.23085 0.99558 1.31945 1.23226 1.00363 0.95639 0.90151 1.22169 0.99641 0.95773 0.96547 1.31221 1.11060 1.14595 1.12925 0.83218 1.04880 0.73893 0.75122 0.75431 1.53201 1.29380 1.23283 1.86424 1.93632 1.74550 1.80410 1.45875 1.93597 1.68346 1.65791 1.67660 1.22887 0.93152 0.89225 1.02391 0.91884 0.77438 0.92647 0.88825 0.87201 0.93258 0.88811 0.90650 0.75151 0.75964 0.93280 0.87927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.17 5.29 -10.97 -0.06 -14.22 16 10 C 0.45 10.38 7.59 -10.99 -0.08 10.30 16 11 O -0.58 -15.28 14.42 5.55 0.08 -15.20 16 12 C 0.03 0.50 5.30 -4.98 -0.03 0.47 16 13 N -0.47 -7.65 5.06 -231.28 -1.17 -8.82 16 14 C 0.03 0.51 5.80 -2.18 -0.01 0.50 16 15 C -0.10 -1.03 6.34 -25.35 -0.16 -1.19 16 16 C -0.59 -5.55 3.78 -25.35 -0.10 -5.64 16 17 H 0.15 1.04 8.14 -51.93 -0.42 0.62 16 18 S 2.62 25.42 5.09 -107.50 -0.55 24.87 16 19 N -1.25 -7.23 9.35 60.35 0.56 -6.67 16 20 O -0.96 -12.92 17.77 -57.54 -1.02 -13.95 16 21 O -0.96 -12.35 18.10 -57.54 -1.04 -13.39 16 22 C 0.05 0.66 6.07 -2.09 -0.01 0.64 16 23 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 25 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 26 H 0.09 1.48 8.13 -51.93 -0.42 1.05 16 27 H 0.11 1.92 6.91 -51.93 -0.36 1.56 16 28 H 0.05 0.74 7.82 -51.93 -0.41 0.33 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.60 7.35 -51.93 -0.38 0.22 16 31 H 0.42 1.90 8.96 -34.47 -0.31 1.59 16 32 H 0.41 1.40 8.62 -34.47 -0.30 1.10 16 33 H 0.05 0.57 7.68 -51.93 -0.40 0.17 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -36.56 300.20 -7.69 -44.25 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.08 Total: 9.27 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.63 Total: -2.84 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.06 Total: -53.43 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.98 Total: -42.54 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 25.42 SS G_CDS: -0.55 Total: 24.87 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.56 -7.69 -44.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168214657.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.686 kcal (2) G-P(sol) polarization free energy of solvation -36.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds