Wall clock time and date at job start Mon Mar 30 2020 01:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86802 * 119.99792 * 2 1 4 4 H 1.48498 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47315 * 300.00332 * 3 2 1 6 6 H 1.48505 * 109.47148 * 60.00265 * 3 2 1 7 7 C 1.38943 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00089 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00099 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00112 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99950 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00154 * 180.02562 * 10 9 7 13 13 N 1.46896 * 109.47528 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00166 * 290.12592 * 13 12 10 15 15 C 1.54373 * 104.59432 * 200.95781 * 14 13 12 16 16 C 1.54261 * 105.06422 * 23.85103 * 15 14 13 17 17 H 1.08995 * 110.32235 * 240.99669 * 16 15 14 18 18 S 1.81405 * 110.32319 * 118.89568 * 16 15 14 19 19 N 1.65597 * 104.44945 * 62.83093 * 18 16 15 20 20 O 1.42098 * 110.54249 * 311.20339 * 18 16 15 21 21 O 1.42096 * 110.54236 * 174.45428 * 18 16 15 22 22 C 1.48724 * 111.02088 * 174.61585 * 13 12 10 23 23 H 0.96999 * 120.00311 * 359.97438 * 1 2 3 24 24 H 0.97000 * 119.99587 * 0.02562 * 9 7 2 25 25 H 1.08997 * 109.47497 * 59.99691 * 12 10 9 26 26 H 1.09003 * 109.47230 * 299.99623 * 12 10 9 27 27 H 1.08997 * 110.41096 * 82.17774 * 14 13 12 28 28 H 1.09006 * 110.40639 * 319.73576 * 14 13 12 29 29 H 1.08999 * 110.32628 * 264.95286 * 15 14 13 30 30 H 1.09003 * 110.40761 * 142.79448 * 15 14 13 31 31 H 0.97001 * 120.00224 * 150.00427 * 19 18 16 32 32 H 0.97005 * 120.00050 * 329.72196 * 19 18 16 33 33 H 1.09002 * 110.38320 * 40.24169 * 22 13 12 34 34 H 1.09006 * 110.50730 * 277.75534 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1986 -5.9794 -0.0016 14 6 2.9073 -6.0734 -1.3039 15 6 3.4271 -7.5259 -1.3599 16 6 2.4980 -8.3208 -0.4194 17 1 3.0715 -8.7602 0.3967 18 16 1.6248 -9.6153 -1.3427 19 7 2.8265 -10.6142 -1.8905 20 8 1.0470 -9.0806 -2.5256 21 8 0.8659 -10.4311 -0.4608 22 6 1.4947 -7.2831 0.1281 23 1 -0.4850 0.8400 0.0004 24 1 0.3535 -2.3906 -0.0005 25 1 0.6177 -4.9205 -0.8913 26 1 0.6170 -4.9209 0.8887 27 1 3.7396 -5.3703 -1.3354 28 1 2.2175 -5.8845 -2.1265 29 1 4.4564 -7.5737 -1.0044 30 1 3.3598 -7.9148 -2.3760 31 1 2.6501 -11.5591 -2.0208 32 1 3.7058 -10.2537 -2.0851 33 1 0.5831 -7.2835 -0.4696 34 1 1.2652 -7.4908 1.1732 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168214657.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:25 Heat of formation + Delta-G solvation = -131.934549 kcal Electronic energy + Delta-G solvation = -19727.686637 eV Core-core repulsion = 16400.417697 eV Total energy + Delta-G solvation = -3327.268940 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65925 -39.19419 -38.12671 -37.05700 -35.96007 -34.20353 -33.53013 -33.08779 -30.12462 -28.50851 -26.19352 -22.79553 -22.59716 -21.07301 -20.30476 -19.90929 -18.80783 -18.24260 -17.78831 -17.28272 -17.02709 -16.47202 -16.25840 -16.15296 -15.71042 -15.24962 -14.98555 -14.40808 -13.91477 -13.58587 -13.42724 -13.28354 -13.20196 -13.11542 -12.97875 -12.87538 -12.75892 -12.49307 -12.40439 -12.19119 -12.11061 -11.53342 -11.47787 -11.11846 -10.36298 -10.01832 -9.51174 -8.47110 -5.95979 -0.79853 1.36524 1.41875 1.56080 1.89602 2.03463 2.27531 2.57021 2.81475 3.01638 3.18495 3.19861 3.39257 3.69966 3.93652 4.09206 4.20825 4.29496 4.32810 4.46636 4.54331 4.60630 4.74358 4.97434 5.07621 5.28902 5.40666 5.72377 5.75823 6.03008 6.38615 6.59210 7.12054 7.54958 8.10080 8.70651 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.051668 B = 0.003470 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.788009 B = 8068.180939 C = 8269.207382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.613 6.613 12 C 0.037 3.963 13 N -0.494 5.494 14 C 0.024 3.976 15 C -0.097 4.097 16 C -0.575 4.575 17 H 0.182 0.818 18 S 2.640 3.360 19 N -1.233 6.233 20 O -0.996 6.996 21 O -0.995 6.995 22 C 0.041 3.959 23 H 0.277 0.723 24 H 0.396 0.604 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.428 0.572 32 H 0.428 0.572 33 H 0.054 0.946 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.003 -19.912 -2.606 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.499 6.499 12 C -0.095 4.095 13 N -0.219 5.219 14 C -0.104 4.104 15 C -0.136 4.136 16 C -0.686 4.686 17 H 0.200 0.800 18 S 2.731 3.269 19 N -0.912 5.912 20 O -0.985 6.985 21 O -0.985 6.985 22 C -0.088 4.088 23 H 0.087 0.913 24 H 0.229 0.771 25 H 0.088 0.912 26 H 0.134 0.866 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.133 0.867 30 H 0.116 0.884 31 H 0.260 0.740 32 H 0.258 0.742 33 H 0.072 0.928 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.935 -19.662 -2.248 20.178 hybrid contribution -0.079 1.065 -0.500 1.179 sum 3.856 -18.597 -2.749 19.190 Atomic orbital electron populations 1.69682 1.06891 1.29249 1.50438 1.26056 0.96535 1.02470 0.96292 0.84855 0.78055 0.77034 0.78285 1.19678 1.19654 1.19648 1.19702 0.92714 0.83897 1.49799 0.90178 1.41936 1.09331 1.04717 1.65215 1.20595 0.88275 0.85729 0.82357 1.90470 1.15468 1.87797 1.56181 1.22031 0.94203 0.89284 1.03962 1.65189 1.23482 1.00616 1.32563 1.23219 0.99230 0.98280 0.89666 1.22197 1.00632 0.92449 0.98333 1.31164 1.10334 1.13479 1.13593 0.80047 1.03929 0.73841 0.74701 0.74426 1.52770 1.29289 1.23322 1.85787 1.93593 1.76098 1.81216 1.47611 1.93559 1.69934 1.66617 1.68355 1.23080 0.93875 0.87865 1.03973 0.91314 0.77052 0.91163 0.86632 0.90521 0.94017 0.86717 0.88387 0.74036 0.74229 0.92779 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.98 13.05 21.66 0.28 -49.69 16 2 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 3 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -29.63 5.29 -306.99 -1.62 -31.25 16 10 C 0.44 21.12 7.59 87.65 0.66 21.78 16 11 O -0.61 -33.44 14.42 -3.07 -0.04 -33.48 16 12 C 0.04 1.29 5.30 85.56 0.45 1.74 16 13 N -0.49 -15.47 5.06 -885.62 -4.48 -19.95 16 14 C 0.02 0.72 5.80 86.45 0.50 1.22 16 15 C -0.10 -1.73 6.34 31.49 0.20 -1.53 16 16 C -0.57 -9.15 3.78 31.49 0.12 -9.03 16 17 H 0.18 1.76 8.14 -2.39 -0.02 1.74 16 18 S 2.64 45.17 5.09 -56.49 -0.29 44.88 16 19 N -1.23 -10.49 9.35 37.02 0.35 -10.14 16 20 O -1.00 -25.45 17.77 -127.65 -2.27 -27.72 16 21 O -1.00 -23.51 18.10 -127.65 -2.31 -25.83 16 22 C 0.04 0.92 6.07 86.42 0.52 1.45 16 23 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 24 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 25 H 0.07 2.24 7.88 -2.39 -0.02 2.22 16 26 H 0.12 3.50 8.13 -2.39 -0.02 3.48 16 27 H 0.08 2.77 6.91 -2.39 -0.02 2.75 16 28 H 0.04 1.26 7.82 -2.38 -0.02 1.24 16 29 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.30 7.35 -2.39 -0.02 1.28 16 31 H 0.43 2.65 8.96 -96.74 -0.87 1.78 16 32 H 0.43 1.33 8.62 -96.74 -0.83 0.49 16 33 H 0.05 1.16 7.68 -2.39 -0.02 1.15 16 34 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 Total: -1.00 -80.42 300.20 -5.89 -86.30 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -1.27 Total: 24.59 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 3.74 Total: -2.68 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -5.48 Total: -111.03 kcal Atomic # 8 Polarization: -82.40 SS G_CDS: -4.62 Total: -87.02 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: 45.17 SS G_CDS: -0.29 Total: 44.88 kcal Total: -80.42 -5.89 -86.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168214657.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.633 kcal (2) G-P(sol) polarization free energy of solvation -80.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds