Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00074 * 2 1 4 4 C 1.47200 * 109.47175 * 180.02562 * 3 2 1 5 5 C 3.40065 * 161.18852 * 359.97438 * 2 1 3 6 6 C 4.74941 * 168.04995 * 359.97438 * 2 1 3 7 7 O 1.21635 * 120.00056 * 243.06398 * 6 5 4 8 8 N 1.34775 * 120.00269 * 63.06468 * 6 5 4 9 9 C 1.39925 * 119.99853 * 175.68665 * 8 6 5 10 10 C 1.39392 * 119.90761 * 215.22257 * 9 8 6 11 11 C 1.38369 * 120.46145 * 180.02562 * 10 9 8 12 12 C 1.38010 * 120.29161 * 359.97438 * 11 10 9 13 13 F 1.35096 * 120.09068 * 179.97438 * 12 11 10 14 14 C 1.41010 * 119.81599 * 359.97438 * 12 11 10 15 15 C 1.41298 * 120.22866 * 179.97438 * 14 12 11 16 16 H 1.07998 * 119.99700 * 324.95859 * 15 14 12 17 17 C 1.39918 * 120.00140 * 145.23340 * 15 14 12 18 18 N 1.30847 * 119.99845 * 4.44648 * 17 15 14 19 19 Si 1.86806 * 119.99764 * 184.44847 * 17 15 14 20 20 H 1.48502 * 109.47181 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47119 * 120.00153 * 19 17 15 22 22 H 1.48497 * 109.46742 * 240.00052 * 19 17 15 23 23 C 1.38167 * 119.91173 * 35.48016 * 9 8 6 24 24 H 1.09004 * 109.46746 * 299.99616 * 1 2 3 25 25 H 1.08999 * 109.47627 * 59.98718 * 1 2 3 26 26 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47094 * 60.00917 * 3 2 1 28 28 H 1.09003 * 109.47710 * 300.00864 * 3 2 1 29 29 H 0.96991 * 120.00476 * 355.68644 * 8 6 5 30 30 H 1.07995 * 119.76882 * 0.02562 * 10 9 8 31 31 H 1.07995 * 119.85109 * 179.97438 * 11 10 9 32 32 H 0.97006 * 119.99765 * 179.97438 * 18 17 15 33 33 H 1.07996 * 120.14722 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6479 1.0966 -0.0005 6 6 6.0754 0.9834 -0.0004 7 8 6.7194 1.4110 0.9387 8 7 6.7055 0.4031 -1.0410 9 6 8.1038 0.3730 -1.0836 10 6 8.7645 0.4889 -2.3055 11 6 10.1468 0.4601 -2.3611 12 6 10.8871 0.3166 -1.2052 13 9 12.2364 0.2885 -1.2642 14 6 10.2311 0.1995 0.0375 15 6 10.9804 0.0516 1.2263 16 1 11.9018 -0.5116 1.2172 17 6 10.5257 0.6301 2.4164 18 7 9.3650 1.2333 2.4489 19 14 11.5759 0.5413 3.9588 20 1 12.8336 -0.1896 3.6600 21 1 11.8988 1.9162 4.4176 22 1 10.8297 -0.1739 5.0250 23 6 8.8257 0.2232 0.0849 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 6.1898 0.0063 -1.7602 30 1 8.1935 0.6020 -3.2152 31 1 10.6485 0.5504 -3.3132 32 1 9.0496 1.6340 3.2741 33 1 8.3132 0.1289 1.0308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187133000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = -42.895567 kcal Electronic energy + Delta-G solvation = -19920.130461 eV Core-core repulsion = 16441.358628 eV Total energy + Delta-G solvation = -3478.771833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.18696 -39.58146 -38.30490 -37.01643 -34.28847 -33.61498 -33.08812 -29.72443 -29.03706 -27.75765 -26.04500 -25.34534 -23.03375 -21.49009 -20.25475 -18.59911 -17.48940 -16.84934 -16.44068 -16.28796 -16.03549 -15.86101 -15.07987 -14.55203 -14.44333 -13.95146 -13.86459 -13.33471 -13.28541 -12.91353 -12.53461 -12.00461 -11.84722 -11.82260 -11.46261 -11.13254 -11.05532 -10.81617 -10.63033 -10.51676 -10.34993 -9.90010 -9.70992 -9.37127 -9.16501 -8.99852 -7.44625 -6.93536 -6.49973 -4.39044 1.60526 2.27785 2.62344 2.79811 3.13455 3.16030 3.21363 3.32597 3.57996 4.01414 4.06831 4.52217 4.66946 4.83234 4.93524 4.99879 5.10643 5.31992 5.38782 5.53519 5.88026 6.10059 6.36844 6.68771 6.70678 6.87055 6.96762 7.22420 7.26424 7.41752 7.51460 7.69576 8.01810 8.08314 8.27779 8.49107 8.75669 8.85489 8.86855 10.31681 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.004253 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.521363 B = 6581.877144 C = 7892.503042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.174 3.826 4 C -0.117 4.117 5 C -0.164 4.164 6 C 0.603 3.397 7 O -0.457 6.457 8 N -0.655 5.655 9 C 0.128 3.872 10 C -0.231 4.231 11 C -0.115 4.115 12 C -0.030 4.030 13 F -0.162 7.162 14 C 0.090 3.910 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.067 3.933 18 N -0.771 5.771 19 Si 0.915 3.085 20 H -0.261 1.261 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.130 4.130 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.401 0.599 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.282 0.718 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.208 -0.280 -4.372 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.099 3.901 4 C -0.119 4.119 5 C -0.167 4.167 6 C 0.388 3.612 7 O -0.329 6.329 8 N -0.300 5.300 9 C 0.036 3.964 10 C -0.253 4.253 11 C -0.134 4.134 12 C -0.050 4.050 13 F -0.142 7.142 14 C 0.086 3.914 15 C -0.485 4.485 16 H 0.099 0.901 17 C -0.152 4.152 18 N -0.395 5.395 19 Si 0.740 3.260 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.151 4.151 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.235 0.765 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.093 0.907 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.759 0.023 -3.490 15.166 hybrid contribution 0.059 0.186 0.210 0.287 sum -14.700 0.209 -3.280 15.063 Atomic orbital electron populations 1.22809 0.79977 1.03363 1.00342 1.87987 1.20315 1.26512 1.95557 1.19181 0.83035 0.85751 1.02163 1.21796 0.92678 0.98504 0.98948 1.21148 0.92676 1.00357 1.02563 1.14866 0.82255 0.80123 0.83992 1.91127 1.64484 1.44809 1.32462 1.43111 1.06258 1.57208 1.23378 1.17641 0.79910 1.03672 0.95160 1.19891 0.93207 1.17037 0.95120 1.20250 0.93506 1.03727 0.95947 1.18038 0.76013 1.15801 0.95147 1.91271 1.30439 1.95178 1.97275 1.17561 0.91958 0.90918 0.90938 1.19447 1.07200 1.29688 0.92172 0.90100 1.25963 0.95179 0.93812 1.00294 1.69850 1.16135 1.25010 1.28508 0.86146 0.80556 0.78812 0.80535 1.18497 1.19875 1.19921 1.21704 0.92990 1.02853 0.97537 0.93588 0.93621 0.89116 0.90094 0.90021 0.76457 0.88136 0.87688 0.90701 0.82454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -4.11 10.66 -35.23 -0.38 -4.49 16 3 C 0.17 1.66 6.41 34.37 0.22 1.88 16 4 C -0.12 -1.63 13.73 -37.12 -0.51 -2.14 16 5 C -0.16 -2.77 13.62 -38.84 -0.53 -3.30 16 6 C 0.60 12.28 7.48 -14.34 -0.11 12.17 16 7 O -0.46 -11.38 14.45 5.25 0.08 -11.31 16 8 N -0.66 -12.45 5.32 -12.09 -0.06 -12.51 16 9 C 0.13 2.92 6.29 -83.76 -0.53 2.40 16 10 C -0.23 -4.90 9.97 -39.10 -0.39 -5.29 16 11 C -0.11 -2.58 10.00 -39.62 -0.40 -2.97 16 12 C -0.03 -0.76 7.31 -38.62 -0.28 -1.04 16 13 F -0.16 -4.16 16.82 2.25 0.04 -4.12 16 14 C 0.09 2.49 5.55 -106.78 -0.59 1.89 16 15 C -0.46 -12.62 8.69 -37.79 -0.33 -12.95 16 16 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 17 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 18 N -0.77 -21.05 10.54 55.55 0.59 -20.47 16 19 Si 0.91 19.76 29.56 -169.99 -5.03 14.73 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 23 C -0.13 -3.43 7.30 -38.70 -0.28 -3.71 16 24 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.40 5.97 8.79 -40.82 -0.36 5.61 16 30 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 31 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 33 H 0.16 4.46 4.35 -52.49 -0.23 4.23 16 LS Contribution 307.54 15.07 4.63 4.63 Total: -1.00 -32.24 307.54 -5.93 -38.17 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.09 Total: 5.46 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.70 Total: -10.11 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.52 Total: -32.98 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.30 Total: -15.79 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.04 Total: -4.12 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.24 -5.93 -38.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187133000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.725 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds