Wall clock time and date at job start Mon Mar 30 2020 02:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00074 * 2 1 4 4 C 1.47200 * 109.47175 * 180.02562 * 3 2 1 5 5 C 3.40065 * 161.18852 * 359.97438 * 2 1 3 6 6 C 4.74941 * 168.04995 * 359.97438 * 2 1 3 7 7 O 1.21635 * 120.00056 * 243.06398 * 6 5 4 8 8 N 1.34775 * 120.00269 * 63.06468 * 6 5 4 9 9 C 1.39925 * 119.99853 * 175.68665 * 8 6 5 10 10 C 1.39392 * 119.90761 * 215.22257 * 9 8 6 11 11 C 1.38369 * 120.46145 * 180.02562 * 10 9 8 12 12 C 1.38010 * 120.29161 * 359.97438 * 11 10 9 13 13 F 1.35096 * 120.09068 * 179.97438 * 12 11 10 14 14 C 1.41010 * 119.81599 * 359.97438 * 12 11 10 15 15 C 1.41298 * 120.22866 * 179.97438 * 14 12 11 16 16 H 1.07998 * 119.99700 * 324.95859 * 15 14 12 17 17 C 1.39918 * 120.00140 * 145.23340 * 15 14 12 18 18 N 1.30847 * 119.99845 * 4.44648 * 17 15 14 19 19 Si 1.86806 * 119.99764 * 184.44847 * 17 15 14 20 20 H 1.48502 * 109.47181 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47119 * 120.00153 * 19 17 15 22 22 H 1.48497 * 109.46742 * 240.00052 * 19 17 15 23 23 C 1.38167 * 119.91173 * 35.48016 * 9 8 6 24 24 H 1.09004 * 109.46746 * 299.99616 * 1 2 3 25 25 H 1.08999 * 109.47627 * 59.98718 * 1 2 3 26 26 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47094 * 60.00917 * 3 2 1 28 28 H 1.09003 * 109.47710 * 300.00864 * 3 2 1 29 29 H 0.96991 * 120.00476 * 355.68644 * 8 6 5 30 30 H 1.07995 * 119.76882 * 0.02562 * 10 9 8 31 31 H 1.07995 * 119.85109 * 179.97438 * 11 10 9 32 32 H 0.97006 * 119.99765 * 179.97438 * 18 17 15 33 33 H 1.07996 * 120.14722 * 0.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.4776 1.1892 -0.0006 5 6 4.6479 1.0966 -0.0005 6 6 6.0754 0.9834 -0.0004 7 8 6.7194 1.4110 0.9387 8 7 6.7055 0.4031 -1.0410 9 6 8.1038 0.3730 -1.0836 10 6 8.7645 0.4889 -2.3055 11 6 10.1468 0.4601 -2.3611 12 6 10.8871 0.3166 -1.2052 13 9 12.2364 0.2885 -1.2642 14 6 10.2311 0.1995 0.0375 15 6 10.9804 0.0516 1.2263 16 1 11.9018 -0.5116 1.2172 17 6 10.5257 0.6301 2.4164 18 7 9.3650 1.2333 2.4489 19 14 11.5759 0.5413 3.9588 20 1 12.8336 -0.1896 3.6600 21 1 11.8988 1.9162 4.4176 22 1 10.8297 -0.1739 5.0250 23 6 8.8257 0.2232 0.0849 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8898 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8901 28 1 1.6885 1.8465 -0.8899 29 1 6.1898 0.0063 -1.7602 30 1 8.1935 0.6020 -3.2152 31 1 10.6485 0.5504 -3.3132 32 1 9.0496 1.6340 3.2741 33 1 8.3132 0.1289 1.0308 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187133000.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:34 Heat of formation + Delta-G solvation = -64.671762 kcal Electronic energy + Delta-G solvation = -19921.074748 eV Core-core repulsion = 16441.358628 eV Total energy + Delta-G solvation = -3479.716119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.17892 -41.25225 -39.02240 -38.82312 -36.11913 -35.06857 -34.63001 -31.65752 -30.37201 -29.00046 -27.32432 -26.70260 -24.55764 -23.34087 -22.03936 -20.19195 -19.26193 -17.96520 -17.77404 -17.59205 -17.36728 -16.97651 -16.81456 -16.29320 -16.07310 -15.91604 -15.54283 -14.77602 -14.41153 -14.01671 -13.93125 -13.79063 -13.61208 -13.33193 -12.95375 -12.81490 -12.59039 -12.50970 -12.18230 -11.78646 -11.68609 -11.56155 -11.19214 -11.02842 -10.78849 -10.61322 -9.38605 -8.80411 -8.41587 -6.44807 0.23290 0.78018 0.92397 1.14138 1.35093 1.43922 1.51938 2.00153 2.21075 2.29767 2.73443 2.94110 3.42677 3.53058 4.03105 4.16266 4.33021 4.35568 4.39058 4.57595 4.62747 4.64654 4.93912 4.97294 4.99990 5.09586 5.26919 5.60186 5.71964 5.77867 6.01682 6.09615 6.12623 6.21481 6.50796 6.54617 6.86012 6.88557 7.18447 8.38177 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.004253 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.521363 B = 6581.877144 C = 7892.503042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.167 3.833 4 C -0.059 4.059 5 C -0.228 4.228 6 C 0.606 3.394 7 O -0.514 6.514 8 N -0.641 5.641 9 C 0.130 3.870 10 C -0.208 4.208 11 C -0.109 4.109 12 C -0.057 4.057 13 F -0.168 7.168 14 C 0.057 3.943 15 C -0.497 4.497 16 H 0.071 0.929 17 C 0.024 3.976 18 N -0.804 5.804 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.155 4.155 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.423 0.577 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.283 0.717 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.695 0.081 -5.957 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.092 3.908 4 C -0.062 4.062 5 C -0.232 4.232 6 C 0.393 3.607 7 O -0.389 6.389 8 N -0.287 5.287 9 C 0.037 3.963 10 C -0.229 4.229 11 C -0.128 4.128 12 C -0.077 4.077 13 F -0.147 7.147 14 C 0.053 3.947 15 C -0.527 4.527 16 H 0.089 0.911 17 C -0.191 4.191 18 N -0.429 5.429 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.176 4.176 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.137 0.863 29 H 0.262 0.738 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.093 0.907 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.290 0.360 -5.133 18.040 hybrid contribution 0.580 0.062 0.507 0.773 sum -16.711 0.422 -4.625 17.344 Atomic orbital electron populations 1.23041 0.77645 1.04353 1.01974 1.87933 1.22813 1.26977 1.95934 1.19658 0.79799 0.86175 1.05156 1.22784 0.93568 0.94601 0.95210 1.20486 0.92104 1.04010 1.06560 1.15213 0.83674 0.78770 0.83039 1.91105 1.66228 1.47167 1.34396 1.42968 1.04936 1.56893 1.23932 1.17781 0.81650 1.02072 0.94805 1.20407 0.93079 1.13415 0.96029 1.20677 0.94017 1.01863 0.96273 1.18370 0.76166 1.17254 0.95941 1.91241 1.30804 1.95365 1.97311 1.17908 0.92815 0.91982 0.91962 1.19598 1.07592 1.31770 0.93708 0.91115 1.26816 0.96285 0.92912 1.03089 1.69988 1.17625 1.26077 1.29226 0.85092 0.78696 0.79060 0.76431 1.18279 1.19094 1.18801 1.21569 0.92971 1.04946 0.98155 0.92216 0.91680 0.88598 0.87444 0.86272 0.73846 0.83235 0.83934 0.90681 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -7.56 10.66 -148.98 -1.59 -9.15 16 3 C 0.17 2.51 6.41 70.18 0.45 2.96 16 4 C -0.06 -1.52 13.73 31.12 0.43 -1.09 16 5 C -0.23 -7.59 13.62 30.01 0.41 -7.18 16 6 C 0.61 25.24 7.48 85.49 0.64 25.88 16 7 O -0.51 -26.94 14.45 -4.14 -0.06 -27.00 16 8 N -0.64 -24.06 5.32 -310.40 -1.65 -25.71 16 9 C 0.13 5.91 6.29 38.11 0.24 6.15 16 10 C -0.21 -8.28 9.97 22.58 0.23 -8.06 16 11 C -0.11 -4.69 10.00 22.25 0.22 -4.46 16 12 C -0.06 -2.98 7.31 22.90 0.17 -2.81 16 13 F -0.17 -8.78 16.82 44.97 0.76 -8.02 16 14 C 0.06 3.28 5.55 -21.26 -0.12 3.16 16 15 C -0.50 -29.13 8.69 23.43 0.20 -28.93 16 16 H 0.07 4.09 7.84 -2.91 -0.02 4.07 16 17 C 0.02 1.33 5.42 85.25 0.46 1.79 16 18 N -0.80 -46.46 10.54 21.82 0.23 -46.23 16 19 Si 0.99 42.25 29.56 68.60 2.03 44.28 16 20 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 21 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 22 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 23 C -0.15 -8.55 7.30 22.84 0.17 -8.39 16 24 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.42 11.80 8.79 -92.71 -0.81 10.99 16 30 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 31 H 0.14 5.03 8.06 -2.91 -0.02 5.00 16 32 H 0.28 15.22 8.30 -92.70 -0.77 14.45 16 33 H 0.13 8.04 4.35 -2.91 -0.01 8.03 16 Total: -1.00 -75.99 307.54 4.81 -71.18 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: 0.36 Total: 20.15 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.74 Total: -19.50 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -1.42 Total: -71.94 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.65 Total: -36.15 kcal Atomic # 9 Polarization: -8.78 SS G_CDS: 0.76 Total: -8.02 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -75.99 4.81 -71.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187133000.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.508 kcal (2) G-P(sol) polarization free energy of solvation -75.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds