Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30022 * 126.85516 * 2 1 4 4 O 1.20846 * 111.96411 * 179.97438 * 3 2 1 5 5 C 1.34052 * 111.83791 * 359.76559 * 4 3 2 6 6 C 1.50696 * 126.87673 * 180.26040 * 5 4 3 7 7 C 1.36642 * 106.23872 * 0.37994 * 5 4 3 8 8 C 1.48389 * 128.15977 * 179.91478 * 7 5 4 9 9 C 1.39243 * 120.12910 * 269.67654 * 8 7 5 10 10 C 1.38020 * 119.97135 * 179.97438 * 9 8 7 11 11 C 1.38646 * 120.23528 * 0.25649 * 10 9 8 12 12 F 1.35096 * 119.86807 * 179.74519 * 11 10 9 13 13 C 1.38345 * 120.26440 * 359.48569 * 11 10 9 14 14 C 1.38703 * 120.01912 * 0.51293 * 13 11 10 15 15 O 1.35696 * 120.11112 * 179.72723 * 14 13 11 16 16 C 1.34803 * 117.00376 * 354.39309 * 15 14 13 17 17 H 1.08003 * 120.00363 * 5.06999 * 16 15 14 18 18 C 1.38632 * 120.00179 * 185.06509 * 16 15 14 19 19 N 1.31568 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47060 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47095 * 119.99831 * 20 18 16 23 23 H 1.48501 * 109.47388 * 240.00075 * 20 18 16 24 24 H 1.09001 * 109.46908 * 270.01778 * 1 2 3 25 25 H 1.08995 * 109.47247 * 30.02152 * 1 2 3 26 26 H 1.09005 * 109.46717 * 150.02077 * 1 2 3 27 27 H 1.09000 * 109.47150 * 270.13887 * 6 5 4 28 28 H 1.08996 * 109.47501 * 30.14539 * 6 5 4 29 29 H 1.09006 * 109.47068 * 150.14426 * 6 5 4 30 30 H 1.07997 * 120.01570 * 359.95465 * 9 8 7 31 31 H 1.07992 * 119.87693 * 179.97438 * 10 9 8 32 32 H 1.08001 * 119.98951 * 180.28029 * 13 11 10 33 33 H 0.97004 * 120.00007 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0404 0.0000 4 8 3.4548 0.7298 0.0005 5 6 3.6169 -0.6008 0.0060 6 6 4.9229 -1.3527 0.0138 7 6 2.3609 -1.1388 0.0004 8 6 1.9775 -2.5723 0.0014 9 6 1.7967 -3.2483 -1.2025 10 6 1.4406 -4.5817 -1.1979 11 6 1.2566 -5.2510 0.0023 12 9 0.9031 -6.5549 -0.0018 13 6 1.4388 -4.5904 1.2041 14 6 1.7967 -3.2504 1.2121 15 8 1.9705 -2.5991 2.3898 16 6 1.6678 -3.2774 3.5147 17 1 1.3836 -4.3178 3.4581 18 6 1.7213 -2.6395 4.7444 19 7 2.0670 -1.3719 4.8134 20 14 1.3025 -3.5796 6.3033 21 1 0.9485 -4.9796 5.9571 22 1 2.4760 -3.5769 7.2133 23 1 0.1507 -2.9299 6.9789 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 5.2429 -1.5356 -1.0120 28 1 5.6792 -0.7620 0.5305 29 1 4.7911 -2.3045 0.5284 30 1 1.9348 -2.7293 -2.1395 31 1 1.3004 -5.1043 -2.1325 32 1 1.2987 -5.1173 2.1364 33 1 2.1048 -0.9257 5.6739 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242106265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = 3.448827 kcal Electronic energy + Delta-G solvation = -21323.707634 eV Core-core repulsion = 17846.945445 eV Total energy + Delta-G solvation = -3476.762189 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.38733 -44.25521 -39.17161 -36.53820 -34.35310 -33.01404 -32.45725 -29.94947 -29.19379 -28.13033 -26.94423 -25.55329 -23.14454 -21.94591 -20.78210 -19.54836 -18.37189 -17.58553 -17.07051 -16.61804 -15.50495 -15.32137 -15.09821 -14.98948 -14.31871 -13.91154 -13.60088 -13.41089 -13.26415 -13.01372 -12.85259 -12.72287 -12.43518 -12.28658 -11.94622 -11.78287 -11.41835 -11.31428 -10.93714 -10.82682 -10.54063 -10.48489 -9.72395 -9.26996 -9.01522 -8.55629 -8.19533 -7.49002 -6.61790 -4.22011 1.71577 2.02206 2.04813 2.78063 3.03251 3.05414 3.11057 3.63608 3.82234 4.14929 4.72346 4.76031 4.90829 4.98869 5.11301 5.32806 5.50302 5.61875 5.64695 5.71698 5.78331 5.93524 5.99901 6.04203 6.13075 6.20437 6.33548 6.41362 6.54958 6.71246 6.74833 6.91089 6.94914 7.18118 7.52567 7.80280 8.82033 8.85091 9.46250 10.53977 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.008527 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.455309 B = 3282.866532 C = 4804.933177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.038 3.962 3 N -0.377 5.377 4 O 0.089 5.911 5 C -0.026 4.026 6 C -0.065 4.065 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.028 4.028 10 C -0.250 4.250 11 C 0.148 3.852 12 F -0.150 7.150 13 C -0.272 4.272 14 C 0.189 3.811 15 O -0.152 6.152 16 C -0.398 4.398 17 H 0.095 0.905 18 C 0.045 3.955 19 N -0.849 5.849 20 Si 0.941 3.059 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.274 1.274 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 -2.188 -8.595 8.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 N -0.085 5.085 4 O 0.027 5.973 5 C -0.090 4.090 6 C -0.122 4.122 7 C -0.125 4.125 8 C -0.111 4.111 9 C -0.047 4.047 10 C -0.269 4.269 11 C 0.128 3.872 12 F -0.129 7.129 13 C -0.292 4.292 14 C 0.132 3.868 15 O -0.053 6.053 16 C -0.474 4.474 17 H 0.113 0.887 18 C -0.161 4.161 19 N -0.482 5.482 20 Si 0.765 3.235 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.199 1.199 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.159 0.841 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.960 -0.486 -8.318 8.388 hybrid contribution -0.421 -1.581 0.971 1.903 sum 0.539 -2.067 -7.347 7.651 Atomic orbital electron populations 1.20091 0.86423 1.02708 1.03581 1.23509 0.98583 0.88368 1.01611 1.73575 0.89326 1.24066 1.21485 1.84674 1.21471 1.22696 1.68503 1.24438 0.98074 0.83419 1.03036 1.20225 0.89783 0.99163 1.03073 1.19215 0.91045 0.93689 1.08593 1.16824 1.13598 0.89882 0.90760 1.20475 0.95495 0.92735 0.95982 1.20433 1.14599 0.95818 0.96090 1.17521 0.97865 0.77456 0.94337 1.91422 1.89484 1.34461 1.97553 1.20985 1.14638 0.95871 0.97686 1.18970 0.91278 0.89416 0.87121 1.84021 1.71187 1.39488 1.10639 1.21446 1.48157 0.95816 0.81977 0.88731 1.25325 0.96207 0.95940 0.98645 1.70064 1.42217 1.09505 1.26401 0.85645 0.78581 0.79245 0.80030 1.18876 1.19936 1.19945 0.89985 0.91277 0.90301 0.90085 0.90264 0.89033 0.85924 0.86058 0.84113 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.18 10.40 36.01 0.37 -0.81 16 2 C 0.04 0.76 7.36 -81.78 -0.60 0.16 16 3 N -0.38 -7.68 12.04 33.68 0.41 -7.27 16 4 O 0.09 1.73 11.18 17.16 0.19 1.92 16 5 C -0.03 -0.49 7.54 -34.89 -0.26 -0.75 16 6 C -0.06 -0.92 10.31 36.00 0.37 -0.55 16 7 C -0.12 -2.42 5.26 -104.72 -0.55 -2.97 16 8 C -0.11 -2.13 5.55 -104.71 -0.58 -2.71 16 9 C -0.03 -0.47 9.77 -39.29 -0.38 -0.85 16 10 C -0.25 -4.10 10.01 -39.51 -0.40 -4.50 16 11 C 0.15 2.74 7.29 -39.39 -0.29 2.45 16 12 F -0.15 -2.71 17.26 2.25 0.04 -2.67 16 13 C -0.27 -5.68 9.14 -39.37 -0.36 -6.04 16 14 C 0.19 4.25 6.65 -38.77 -0.26 3.99 16 15 O -0.15 -4.06 9.21 0.29 0.00 -4.06 16 16 C -0.40 -10.52 9.49 30.88 0.29 -10.23 16 17 H 0.10 2.33 5.21 -52.48 -0.27 2.05 16 18 C 0.05 1.19 5.49 -17.52 -0.10 1.09 16 19 N -0.85 -23.94 13.67 55.48 0.76 -23.19 16 20 Si 0.94 19.76 29.55 -169.99 -5.02 14.73 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 30 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.14 2.98 5.64 -52.49 -0.30 2.69 16 33 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -29.79 302.55 -4.89 -34.68 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.08 Total: 2.99 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -2.74 Total: -21.71 kcal Atomic # 7 Polarization: -31.62 SS G_CDS: 1.16 Total: -30.46 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: 0.19 Total: -2.13 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.79 -4.89 -34.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242106265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.128 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds