Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30022 * 126.85516 * 2 1 4 4 O 1.20846 * 111.96411 * 179.97438 * 3 2 1 5 5 C 1.34052 * 111.83791 * 359.76559 * 4 3 2 6 6 C 1.50696 * 126.87673 * 180.26040 * 5 4 3 7 7 C 1.36642 * 106.23872 * 0.37994 * 5 4 3 8 8 C 1.48389 * 128.15977 * 179.91478 * 7 5 4 9 9 C 1.39243 * 120.12910 * 269.67654 * 8 7 5 10 10 C 1.38020 * 119.97135 * 179.97438 * 9 8 7 11 11 C 1.38646 * 120.23528 * 0.25649 * 10 9 8 12 12 F 1.35096 * 119.86807 * 179.74519 * 11 10 9 13 13 C 1.38345 * 120.26440 * 359.48569 * 11 10 9 14 14 C 1.38703 * 120.01912 * 0.51293 * 13 11 10 15 15 O 1.35696 * 120.11112 * 179.72723 * 14 13 11 16 16 C 1.34803 * 117.00376 * 354.39309 * 15 14 13 17 17 H 1.08003 * 120.00363 * 5.06999 * 16 15 14 18 18 C 1.38632 * 120.00179 * 185.06509 * 16 15 14 19 19 N 1.31568 * 119.99969 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00108 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47060 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47095 * 119.99831 * 20 18 16 23 23 H 1.48501 * 109.47388 * 240.00075 * 20 18 16 24 24 H 1.09001 * 109.46908 * 270.01778 * 1 2 3 25 25 H 1.08995 * 109.47247 * 30.02152 * 1 2 3 26 26 H 1.09005 * 109.46717 * 150.02077 * 1 2 3 27 27 H 1.09000 * 109.47150 * 270.13887 * 6 5 4 28 28 H 1.08996 * 109.47501 * 30.14539 * 6 5 4 29 29 H 1.09006 * 109.47068 * 150.14426 * 6 5 4 30 30 H 1.07997 * 120.01570 * 359.95465 * 9 8 7 31 31 H 1.07992 * 119.87693 * 179.97438 * 10 9 8 32 32 H 1.08001 * 119.98951 * 180.28029 * 13 11 10 33 33 H 0.97004 * 120.00007 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0404 0.0000 4 8 3.4548 0.7298 0.0005 5 6 3.6169 -0.6008 0.0060 6 6 4.9229 -1.3527 0.0138 7 6 2.3609 -1.1388 0.0004 8 6 1.9775 -2.5723 0.0014 9 6 1.7967 -3.2483 -1.2025 10 6 1.4406 -4.5817 -1.1979 11 6 1.2566 -5.2510 0.0023 12 9 0.9031 -6.5549 -0.0018 13 6 1.4388 -4.5904 1.2041 14 6 1.7967 -3.2504 1.2121 15 8 1.9705 -2.5991 2.3898 16 6 1.6678 -3.2774 3.5147 17 1 1.3836 -4.3178 3.4581 18 6 1.7213 -2.6395 4.7444 19 7 2.0670 -1.3719 4.8134 20 14 1.3025 -3.5796 6.3033 21 1 0.9485 -4.9796 5.9571 22 1 2.4760 -3.5769 7.2133 23 1 0.1507 -2.9299 6.9789 24 1 -0.3633 0.0003 1.0277 25 1 -0.3633 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 5.2429 -1.5356 -1.0120 28 1 5.6792 -0.7620 0.5305 29 1 4.7911 -2.3045 0.5284 30 1 1.9348 -2.7293 -2.1395 31 1 1.3004 -5.1043 -2.1325 32 1 1.2987 -5.1173 2.1364 33 1 2.1048 -0.9257 5.6739 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242106265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -13.247250 kcal Electronic energy + Delta-G solvation = -21324.431630 eV Core-core repulsion = 17846.945445 eV Total energy + Delta-G solvation = -3477.486185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.86109 -45.75490 -40.83101 -38.18405 -35.83034 -34.44196 -34.31720 -31.44646 -30.74188 -29.54976 -28.31053 -27.41437 -24.65507 -23.55930 -22.30640 -20.98882 -20.11354 -19.25588 -18.58818 -18.11405 -17.15960 -16.92221 -16.59651 -16.47938 -15.97515 -15.53194 -15.18661 -15.01638 -14.74492 -14.31585 -14.24899 -14.11570 -13.84480 -13.58588 -13.46972 -13.29353 -12.98235 -12.87963 -12.48061 -12.31829 -12.14134 -11.94445 -11.54152 -10.86927 -10.77081 -10.00790 -9.72503 -9.11680 -8.52557 -6.21215 0.18045 0.52604 0.55924 1.26292 1.33136 1.39611 1.50053 2.11605 2.23549 2.59011 3.00959 3.22519 3.29135 3.46751 3.66158 3.90744 4.01185 4.21721 4.30307 4.41627 4.44914 4.60368 4.67443 4.69891 4.76211 4.86103 4.93141 5.02752 5.14355 5.16252 5.22979 5.27384 5.45263 5.52776 5.92585 6.01759 6.91552 7.36206 7.66734 8.68224 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.008527 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.455309 B = 3282.866532 C = 4804.933177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.024 3.976 3 N -0.397 5.397 4 O 0.084 5.916 5 C -0.022 4.022 6 C -0.064 4.064 7 C -0.151 4.151 8 C -0.104 4.104 9 C -0.016 4.016 10 C -0.215 4.215 11 C 0.142 3.858 12 F -0.145 7.145 13 C -0.282 4.282 14 C 0.164 3.836 15 O -0.202 6.202 16 C -0.415 4.415 17 H 0.101 0.899 18 C -0.011 4.011 19 N -0.909 5.909 20 Si 1.011 2.989 21 H -0.252 1.252 22 H -0.268 1.268 23 H -0.270 1.270 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.120 0.880 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.164 0.836 32 H 0.128 0.872 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.040 -3.774 -11.034 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.134 4.134 3 N -0.107 5.107 4 O 0.022 5.978 5 C -0.085 4.085 6 C -0.121 4.121 7 C -0.155 4.155 8 C -0.106 4.106 9 C -0.034 4.034 10 C -0.234 4.234 11 C 0.123 3.877 12 F -0.124 7.124 13 C -0.302 4.302 14 C 0.111 3.889 15 O -0.106 6.106 16 C -0.491 4.491 17 H 0.118 0.882 18 C -0.211 4.211 19 N -0.545 5.545 20 Si 0.830 3.170 21 H -0.175 1.175 22 H -0.193 1.193 23 H -0.195 1.195 24 H 0.082 0.918 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.180 0.820 31 H 0.182 0.818 32 H 0.146 0.854 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.943 -2.112 -10.813 11.058 hybrid contribution -0.406 -1.199 1.375 1.869 sum 0.537 -3.311 -9.439 10.017 Atomic orbital electron populations 1.20160 0.84833 1.04625 1.02918 1.24020 0.99913 0.88389 1.01116 1.73549 0.89759 1.24679 1.22684 1.84640 1.21225 1.23319 1.68573 1.25158 0.99346 0.83061 1.00964 1.20422 0.88187 0.97971 1.05542 1.19435 0.91804 0.93918 1.10330 1.17092 1.12701 0.89964 0.90848 1.20913 0.93523 0.92749 0.96190 1.20934 1.10311 0.95471 0.96694 1.17610 0.98061 0.77772 0.94294 1.91441 1.89389 1.34027 1.97514 1.21002 1.15135 0.95600 0.98504 1.19450 0.92123 0.90217 0.87145 1.84007 1.74259 1.40722 1.11617 1.21816 1.48296 0.96243 0.82701 0.88158 1.26444 0.96015 0.96783 1.01826 1.70199 1.45685 1.11579 1.27074 0.84634 0.78418 0.78286 0.75619 1.17524 1.19295 1.19529 0.91813 0.88911 0.88838 0.86156 0.88752 0.90462 0.82000 0.81836 0.85431 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.26 10.40 71.24 0.74 -1.51 16 2 C 0.02 0.97 7.36 43.85 0.32 1.29 16 3 N -0.40 -16.26 12.04 -48.48 -0.58 -16.84 16 4 O 0.08 3.22 11.18 71.61 0.80 4.03 16 5 C -0.02 -0.79 7.54 25.31 0.19 -0.60 16 6 C -0.06 -1.71 10.31 71.23 0.73 -0.98 16 7 C -0.15 -5.91 5.26 -19.93 -0.10 -6.01 16 8 C -0.10 -3.95 5.55 -19.92 -0.11 -4.06 16 9 C -0.02 -0.46 9.77 22.46 0.22 -0.24 16 10 C -0.22 -6.00 10.01 22.32 0.22 -5.77 16 11 C 0.14 4.89 7.29 22.39 0.16 5.05 16 12 F -0.15 -4.80 17.26 44.97 0.78 -4.02 16 13 C -0.28 -11.73 9.14 22.41 0.20 -11.53 16 14 C 0.16 7.44 6.65 22.79 0.15 7.60 16 15 O -0.20 -11.24 9.21 -21.87 -0.20 -11.44 16 16 C -0.41 -22.90 9.49 67.91 0.64 -22.26 16 17 H 0.10 5.15 5.21 -2.91 -0.02 5.14 16 18 C -0.01 -0.62 5.49 84.83 0.47 -0.15 16 19 N -0.91 -54.04 13.67 21.61 0.30 -53.75 16 20 Si 1.01 41.74 29.55 68.60 2.03 43.77 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 23 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 26 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 27 H 0.12 2.26 8.14 -2.39 -0.02 2.25 16 28 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 2.32 8.08 -2.38 -0.02 2.30 16 30 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.13 5.55 5.64 -2.91 -0.02 5.54 16 33 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -68.56 302.55 8.12 -60.44 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 1.16 Total: 17.00 kcal Atomic # 6 Polarization: -43.02 SS G_CDS: 3.85 Total: -39.17 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -0.29 Total: -70.59 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.60 Total: -7.42 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.78 Total: -4.02 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.56 8.12 -60.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242106265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.195 kcal (2) G-P(sol) polarization free energy of solvation -68.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds