Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 C 1.38551 * 120.77150 * 89.99739 * 12 11 10 14 14 C 1.38521 * 119.13586 * 180.02562 * 13 12 11 15 15 F 1.35100 * 119.64706 * 180.02562 * 14 13 12 16 16 N 1.32061 * 120.70420 * 0.02562 * 14 13 12 17 17 C 1.31906 * 121.68596 * 0.02562 * 16 14 13 18 18 C 1.50692 * 119.60214 * 180.02562 * 17 16 14 19 19 F 1.39906 * 109.47007 * 4.99585 * 18 17 16 20 20 F 1.39899 * 109.47852 * 124.99457 * 18 17 16 21 21 F 1.39905 * 109.47333 * 244.99624 * 18 17 16 22 22 C 1.38149 * 120.79502 * 359.71485 * 17 16 14 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 25 25 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 26 26 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 27 27 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 28 28 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 29 29 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 30 30 H 1.07994 * 120.43338 * 0.02977 * 13 12 11 31 31 H 1.08001 * 120.38903 * 180.28979 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 6 2.4597 -6.1325 0.0024 13 6 2.9204 -6.6708 1.1930 14 6 3.8206 -7.7229 1.1538 15 9 4.2761 -8.2560 2.3086 16 7 4.2382 -8.2104 -0.0003 17 6 3.8201 -7.7204 -1.1514 18 6 4.3270 -8.3131 -2.4408 19 9 5.1266 -9.4262 -2.1598 20 9 3.2421 -8.7062 -3.2318 21 9 5.0830 -7.3573 -3.1280 22 6 2.9183 -6.6746 -1.1891 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8880 25 1 0.6247 -2.5564 0.8919 26 1 2.8714 -3.6047 -0.8890 27 1 2.8726 -3.6039 0.8910 28 1 0.8541 -5.0447 0.8922 29 1 0.8534 -5.0451 -0.8877 30 1 2.5821 -6.2753 2.1393 31 1 2.5768 -6.2815 -2.1353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066267.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -192.181317 kcal Electronic energy + Delta-G solvation = -20645.507848 eV Core-core repulsion = 16618.405759 eV Total energy + Delta-G solvation = -4027.102089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.29273 -50.23753 -48.80761 -48.75796 -41.59544 -37.02928 -35.07624 -33.10507 -32.82843 -29.19954 -27.81598 -25.82400 -24.47475 -23.09616 -21.85450 -19.80289 -19.68079 -19.65930 -18.53930 -18.23242 -17.66360 -17.33145 -17.31446 -16.52237 -15.69888 -15.62014 -15.56839 -15.19027 -14.96343 -14.90090 -14.90052 -14.69793 -14.64737 -14.13622 -13.97918 -13.74105 -13.43081 -13.00942 -12.66565 -12.53559 -12.44709 -11.55092 -11.46088 -11.28537 -11.14030 -10.71848 -10.51459 -10.43739 -8.17649 -6.27352 -0.63996 -0.27583 1.17316 1.42798 1.43871 1.51832 2.03060 2.12282 2.43078 2.50241 2.87967 3.16518 3.20825 3.34707 3.52972 3.73052 3.88053 4.23028 4.29838 4.43902 4.46151 4.76310 4.81348 5.17511 5.20066 5.22506 5.30038 5.56735 5.80398 5.90777 6.05254 6.28708 6.90326 7.41940 8.93369 Molecular weight = 277.08amu Principal moments of inertia in cm(-1) A = 0.021549 B = 0.003773 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.046337 B = 7418.421240 C = 8047.425380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.544 4.544 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.094 4.094 11 C -0.078 4.078 12 C 0.007 3.993 13 C -0.148 4.148 14 C 0.306 3.694 15 F -0.107 7.107 16 N -0.508 5.508 17 C 0.060 3.940 18 C 0.530 3.470 19 F -0.169 7.169 20 F -0.163 7.163 21 F -0.167 7.167 22 C -0.122 4.122 23 H 0.263 0.737 24 H -0.001 1.001 25 H -0.001 1.001 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.182 0.818 31 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -16.748 -1.848 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.781 3.219 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.115 4.115 12 C -0.001 4.001 13 C -0.169 4.169 14 C 0.151 3.849 15 F -0.086 7.086 16 N -0.223 5.223 17 C -0.078 4.078 18 C 0.475 3.525 19 F -0.150 7.150 20 F -0.145 7.145 21 F -0.149 7.149 22 C -0.142 4.142 23 H 0.072 0.928 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.200 0.800 31 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.308 -17.372 -1.827 18.572 hybrid contribution -0.025 1.314 0.092 1.318 sum 6.283 -16.057 -1.735 17.330 Atomic orbital electron populations 1.70056 1.07574 1.27721 1.51754 1.25864 0.95670 1.02971 0.94925 0.85638 0.78397 0.78791 0.79061 1.19411 1.20999 1.19381 1.21702 0.93501 0.92661 1.50368 0.92472 1.19033 0.94432 0.92490 0.95533 1.21448 0.98077 0.92481 1.01154 1.20783 0.95597 0.89729 1.05393 1.20415 0.94306 0.94234 0.91157 1.22242 0.96997 0.95302 1.02363 1.17934 0.93976 0.92196 0.80766 1.91657 1.87676 1.85594 1.43645 1.66240 1.26776 1.31372 0.97911 1.20563 0.99076 0.97332 0.90796 1.17683 0.75643 0.76097 0.83106 1.93225 1.74412 1.53779 1.93576 1.93253 1.54522 1.91039 1.75659 1.93263 1.76670 1.63960 1.80984 1.22051 0.95718 0.94573 1.01891 0.92834 0.98296 0.98261 0.92787 0.92710 0.88775 0.88863 0.80029 0.80750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.28 13.29 21.45 0.28 -54.00 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.54 -29.22 9.11 25.60 0.23 -28.99 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.02 1.05 4.97 29.85 0.15 1.20 16 10 C -0.09 -3.21 5.13 30.59 0.16 -3.05 16 11 C -0.08 -1.92 5.39 29.85 0.16 -1.76 16 12 C 0.01 0.15 5.17 -19.68 -0.10 0.04 16 13 C -0.15 -3.06 9.79 22.41 0.22 -2.84 16 14 C 0.31 7.30 8.41 84.73 0.71 8.01 16 15 F -0.11 -2.54 17.29 44.97 0.78 -1.76 16 16 N -0.51 -13.40 9.75 -184.95 -1.80 -15.20 16 17 C 0.06 1.43 6.26 42.52 0.27 1.69 16 18 C 0.53 11.87 3.32 71.23 0.24 12.10 16 19 F -0.17 -4.14 16.85 44.97 0.76 -3.38 16 20 F -0.16 -3.39 17.15 44.97 0.77 -2.62 16 21 F -0.17 -3.78 17.28 44.97 0.78 -3.00 16 22 C -0.12 -2.58 9.31 22.36 0.21 -2.37 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 25 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 29 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 30 H 0.18 2.90 8.06 -2.91 -0.02 2.87 16 31 H 0.18 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -61.27 295.74 7.46 -53.82 By element: Atomic # 1 Polarization: -4.49 SS G_CDS: 1.16 Total: -3.32 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 2.70 Total: -15.29 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -1.52 Total: -69.20 kcal Atomic # 9 Polarization: -13.84 SS G_CDS: 3.08 Total: -10.76 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -61.27 7.46 -53.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066267.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.366 kcal (2) G-P(sol) polarization free energy of solvation -61.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds