Wall clock time and date at job start Mon Mar 30 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33578 * 125.73688 * 2 1 4 4 C 1.34890 * 109.82711 * 180.17583 * 3 2 1 5 5 C 1.43205 * 125.75744 * 179.88577 * 4 3 2 6 6 N 4.69745 * 150.58245 * 359.74476 * 2 1 3 7 7 C 1.36102 * 108.48197 * 359.61961 * 4 3 2 8 8 C 1.36744 * 125.72901 * 179.76253 * 2 1 3 9 9 C 1.47479 * 126.70637 * 359.93825 * 8 2 1 10 10 O 1.21597 * 119.99758 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00083 * 180.02562 * 9 8 2 12 12 C 1.46497 * 120.00055 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47424 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99705 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.37104 * 120.00119 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99721 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00072 * 179.97438 * 16 15 13 19 19 N 1.31408 * 119.99924 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99920 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47162 * 89.99670 * 20 18 16 22 22 H 1.48498 * 109.47093 * 209.99370 * 20 18 16 23 23 H 1.48502 * 109.47170 * 329.99914 * 20 18 16 24 24 H 1.08998 * 109.46956 * 270.23825 * 1 2 3 25 25 H 1.09002 * 109.46757 * 30.23825 * 1 2 3 26 26 H 1.09006 * 109.47248 * 150.24040 * 1 2 3 27 27 H 1.07994 * 126.71816 * 180.22825 * 7 4 3 28 28 H 0.97008 * 120.00081 * 0.02562 * 11 9 8 29 29 H 1.09002 * 109.47197 * 300.00603 * 12 11 9 30 30 H 1.09001 * 109.46659 * 60.00534 * 12 11 9 31 31 H 0.96997 * 120.00176 * 359.97438 * 15 13 12 32 32 H 0.97007 * 119.99538 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7145 -0.0039 5 6 4.7078 1.6027 -0.0074 6 7 5.5988 2.3072 -0.0103 7 6 3.6455 -0.6451 0.0021 8 6 2.3055 -1.1101 0.0046 9 6 1.8605 -2.5161 0.0117 10 8 0.6730 -2.7779 0.0135 11 7 2.7699 -3.5107 0.0162 12 6 2.3278 -4.9074 0.0238 13 6 3.5307 -5.8151 0.0282 14 8 4.6475 -5.3419 0.0258 15 7 3.3656 -7.1527 0.0349 16 6 4.4600 -7.9785 0.0384 17 1 5.4544 -7.5571 0.0362 18 6 4.2898 -9.3575 0.0458 19 7 5.3387 -10.1490 0.0487 20 14 2.5698 -10.0863 0.0503 21 1 2.1134 -10.2868 -1.3485 22 1 2.5873 -11.3921 0.7572 23 1 1.6412 -9.1592 0.7458 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3634 -0.8922 -0.5101 27 1 4.5393 -1.2513 0.0045 28 1 3.7172 -3.3019 0.0151 29 1 1.7288 -5.0941 0.9152 30 1 1.7276 -5.1033 -0.8648 31 1 2.4725 -7.5312 0.0373 32 1 5.2198 -11.1117 0.0543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261115940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:11 Heat of formation + Delta-G solvation = -21.439692 kcal Electronic energy + Delta-G solvation = -19859.506657 eV Core-core repulsion = 16401.585183 eV Total energy + Delta-G solvation = -3457.921474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.30376 -39.63719 -38.32251 -37.01615 -34.68629 -33.98366 -33.67560 -32.41196 -31.84968 -28.70934 -27.48953 -24.73154 -23.46850 -22.15997 -20.87921 -19.91194 -19.38741 -18.44499 -17.06915 -16.90422 -16.04316 -15.70893 -15.40070 -15.26476 -14.86942 -14.39224 -14.09317 -13.90410 -13.83287 -13.66395 -13.37476 -13.16702 -13.10542 -12.97694 -12.54918 -12.26400 -12.19790 -12.17725 -11.27731 -10.68261 -10.44210 -10.13084 -10.08349 -9.74600 -9.11246 -8.86875 -8.83987 -8.35355 -6.44907 -3.97898 0.54768 1.25859 1.52139 2.52701 2.85625 2.95722 3.00428 3.06730 3.11299 3.21320 3.50716 3.61912 3.99609 4.26984 4.37020 4.47862 4.79129 5.00060 5.09673 5.16802 5.22518 5.29171 5.60235 5.65200 5.70607 5.72954 5.80349 6.38830 6.41701 6.91334 7.38894 7.58369 7.95075 8.18496 8.40173 8.77182 9.24929 9.57614 10.67127 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.003444 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.071395 B = 8127.832845 C = 9110.456991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.113 3.887 3 O -0.149 6.149 4 C 0.027 3.973 5 C 0.293 3.707 6 N -0.378 5.378 7 C -0.082 4.082 8 C -0.236 4.236 9 C 0.589 3.411 10 O -0.545 6.545 11 N -0.698 5.698 12 C 0.107 3.893 13 C 0.436 3.564 14 O -0.579 6.579 15 N -0.574 5.574 16 C -0.311 4.311 17 H 0.122 0.878 18 C 0.046 3.954 19 N -0.873 5.873 20 Si 0.880 3.120 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.267 1.267 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.118 0.882 27 H 0.174 0.826 28 H 0.413 0.587 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.375 0.625 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 16.945 -0.115 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.057 3.943 3 O -0.043 6.043 4 C -0.024 4.024 5 C -0.022 4.022 6 N -0.056 5.056 7 C -0.105 4.105 8 C -0.240 4.240 9 C 0.376 3.624 10 O -0.425 6.425 11 N -0.351 5.351 12 C -0.020 4.020 13 C 0.222 3.778 14 O -0.464 6.464 15 N -0.212 5.212 16 C -0.440 4.440 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.512 5.512 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 H 0.115 0.885 25 H 0.101 0.899 26 H 0.136 0.864 27 H 0.192 0.808 28 H 0.251 0.749 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.208 0.792 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.149 18.188 -0.119 20.828 hybrid contribution -0.939 -1.098 0.043 1.446 sum -11.089 17.090 -0.076 20.372 Atomic orbital electron populations 1.20788 0.82576 1.05789 1.05107 1.23178 0.94316 0.82223 0.94566 1.83951 1.14971 1.34665 1.70710 1.16100 0.79618 0.89756 1.16942 1.23441 0.92027 0.92738 0.94007 1.81356 1.09621 1.05645 1.09010 1.22107 0.98431 0.92153 0.97839 1.20093 0.92833 0.94710 1.16376 1.17011 0.85538 0.83308 0.76581 1.90749 1.16100 1.84213 1.51433 1.45479 1.10992 1.05079 1.73592 1.21012 0.96527 0.80869 1.03626 1.19608 0.89821 0.83113 0.85269 1.90545 1.25358 1.74689 1.55783 1.42116 1.08678 1.05172 1.65218 1.19444 0.88447 0.87306 1.48789 0.86052 1.25074 0.97905 0.95836 0.97058 1.69619 1.29104 1.04521 1.47917 0.86667 0.83670 0.79973 0.79152 1.19364 1.19975 1.19189 0.88517 0.89895 0.86406 0.80817 0.74870 0.89395 0.89377 0.79210 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.58 9.87 36.01 0.36 -0.23 16 2 C 0.11 1.04 7.37 -34.85 -0.26 0.78 16 3 O -0.15 -1.39 10.62 5.97 0.06 -1.32 16 4 C 0.03 0.26 7.04 -38.42 -0.27 -0.01 16 5 C 0.29 3.06 15.87 -22.47 -0.36 2.70 16 6 N -0.38 -4.63 18.54 41.83 0.78 -3.85 16 7 C -0.08 -0.78 10.28 -38.97 -0.40 -1.18 16 8 C -0.24 -2.54 6.13 -105.30 -0.65 -3.18 16 9 C 0.59 7.82 7.82 -12.50 -0.10 7.73 16 10 O -0.55 -8.13 14.77 5.28 0.08 -8.05 16 11 N -0.70 -9.98 5.52 -62.55 -0.35 -10.33 16 12 C 0.11 1.68 6.15 -5.20 -0.03 1.65 16 13 C 0.44 9.03 7.85 -10.99 -0.09 8.94 16 14 O -0.58 -13.92 15.24 5.54 0.08 -13.83 16 15 N -0.57 -12.75 5.09 -10.96 -0.06 -12.81 16 16 C -0.31 -8.33 10.16 -14.93 -0.15 -8.49 16 17 H 0.12 3.72 7.39 -52.49 -0.39 3.33 16 18 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 19 N -0.87 -24.45 13.96 55.50 0.77 -23.67 16 20 Si 0.88 18.39 27.74 -169.99 -4.71 13.67 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.05 6.52 56.52 0.37 -4.68 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.12 0.95 6.44 -51.93 -0.33 0.62 16 27 H 0.17 1.40 7.58 -52.49 -0.40 1.00 16 28 H 0.41 5.84 6.46 -40.82 -0.26 5.57 16 29 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.37 7.27 5.76 -40.82 -0.24 7.04 16 32 H 0.28 7.12 8.31 -40.82 -0.34 6.79 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -31.60 300.76 -3.32 -34.92 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -2.48 Total: 10.93 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -2.04 Total: 9.81 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 1.15 Total: -50.66 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.23 Total: -23.21 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.67 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.60 -3.32 -34.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261115940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.485 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds