Wall clock time and date at job start Mon Mar 30 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33578 * 125.73688 * 2 1 4 4 C 1.34890 * 109.82711 * 180.17583 * 3 2 1 5 5 C 1.43205 * 125.75744 * 179.88577 * 4 3 2 6 6 N 4.69745 * 150.58245 * 359.74476 * 2 1 3 7 7 C 1.36102 * 108.48197 * 359.61961 * 4 3 2 8 8 C 1.36744 * 125.72901 * 179.76253 * 2 1 3 9 9 C 1.47479 * 126.70637 * 359.93825 * 8 2 1 10 10 O 1.21597 * 119.99758 * 0.02562 * 9 8 2 11 11 N 1.34773 * 120.00083 * 180.02562 * 9 8 2 12 12 C 1.46497 * 120.00055 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47424 * 180.02562 * 12 11 9 14 14 O 1.21297 * 119.99705 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00290 * 180.02562 * 13 12 11 16 16 C 1.37104 * 120.00119 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99721 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00072 * 179.97438 * 16 15 13 19 19 N 1.31408 * 119.99924 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99920 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47162 * 89.99670 * 20 18 16 22 22 H 1.48498 * 109.47093 * 209.99370 * 20 18 16 23 23 H 1.48502 * 109.47170 * 329.99914 * 20 18 16 24 24 H 1.08998 * 109.46956 * 270.23825 * 1 2 3 25 25 H 1.09002 * 109.46757 * 30.23825 * 1 2 3 26 26 H 1.09006 * 109.47248 * 150.24040 * 1 2 3 27 27 H 1.07994 * 126.71816 * 180.22825 * 7 4 3 28 28 H 0.97008 * 120.00081 * 0.02562 * 11 9 8 29 29 H 1.09002 * 109.47197 * 300.00603 * 12 11 9 30 30 H 1.09001 * 109.46659 * 60.00534 * 12 11 9 31 31 H 0.96997 * 120.00176 * 359.97438 * 15 13 12 32 32 H 0.97007 * 119.99538 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2872 1.0843 0.0000 4 6 3.5844 0.7145 -0.0039 5 6 4.7078 1.6027 -0.0074 6 7 5.5988 2.3072 -0.0103 7 6 3.6455 -0.6451 0.0021 8 6 2.3055 -1.1101 0.0046 9 6 1.8605 -2.5161 0.0117 10 8 0.6730 -2.7779 0.0135 11 7 2.7699 -3.5107 0.0162 12 6 2.3278 -4.9074 0.0238 13 6 3.5307 -5.8151 0.0282 14 8 4.6475 -5.3419 0.0258 15 7 3.3656 -7.1527 0.0349 16 6 4.4600 -7.9785 0.0384 17 1 5.4544 -7.5571 0.0362 18 6 4.2898 -9.3575 0.0458 19 7 5.3387 -10.1490 0.0487 20 14 2.5698 -10.0863 0.0503 21 1 2.1134 -10.2868 -1.3485 22 1 2.5873 -11.3921 0.7572 23 1 1.6412 -9.1592 0.7458 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3634 -0.8922 -0.5101 27 1 4.5393 -1.2513 0.0045 28 1 3.7172 -3.3019 0.0151 29 1 1.7288 -5.0941 0.9152 30 1 1.7276 -5.1033 -0.8648 31 1 2.4725 -7.5312 0.0373 32 1 5.2198 -11.1117 0.0543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261115940.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:11 Heat of formation + Delta-G solvation = -45.357586 kcal Electronic energy + Delta-G solvation = -19860.543815 eV Core-core repulsion = 16401.585183 eV Total energy + Delta-G solvation = -3458.958632 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.07167 -40.91077 -39.85803 -37.89887 -36.27662 -35.38201 -34.56880 -33.80223 -33.12052 -29.88016 -28.46041 -26.39708 -24.47600 -22.96864 -21.79355 -21.43130 -20.80865 -20.05727 -18.07271 -17.83042 -17.23526 -17.09740 -16.66920 -16.42580 -16.34169 -15.45800 -15.41389 -15.03729 -14.74607 -14.71486 -14.58141 -14.23719 -14.09112 -13.92669 -13.76103 -13.70960 -13.54599 -12.93740 -12.84588 -12.41803 -11.97941 -11.54880 -11.25685 -11.15669 -10.62478 -10.31152 -10.17751 -9.68437 -8.43126 -6.05280 -0.20988 0.41161 0.72872 1.33699 1.36945 1.46808 1.70833 1.82872 1.98574 2.01055 2.23354 2.27882 2.81825 2.93368 3.13663 3.51552 3.56333 3.95454 4.03887 4.30847 4.45812 4.48456 4.53061 4.66728 4.72894 4.93455 5.19166 5.31571 5.51105 5.64856 5.91087 6.08963 6.48097 6.51924 6.81528 7.11044 7.32711 7.81957 8.73386 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027908 B = 0.003444 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.071395 B = 8127.832845 C = 9110.456991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.134 3.866 3 O -0.147 6.147 4 C 0.023 3.977 5 C 0.314 3.686 6 N -0.413 5.413 7 C -0.073 4.073 8 C -0.259 4.259 9 C 0.594 3.406 10 O -0.560 6.560 11 N -0.705 5.705 12 C 0.120 3.880 13 C 0.444 3.556 14 O -0.615 6.615 15 N -0.578 5.578 16 C -0.331 4.331 17 H 0.062 0.938 18 C -0.010 4.010 19 N -0.928 5.928 20 Si 0.960 3.040 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.229 1.229 24 H 0.112 0.888 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.184 0.816 28 H 0.413 0.587 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.393 0.607 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.894 17.771 -0.040 23.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 O -0.040 6.040 4 C -0.028 4.028 5 C -0.001 4.001 6 N -0.091 5.091 7 C -0.096 4.096 8 C -0.263 4.263 9 C 0.383 3.617 10 O -0.441 6.441 11 N -0.359 5.359 12 C -0.008 4.008 13 C 0.231 3.769 14 O -0.501 6.501 15 N -0.218 5.218 16 C -0.460 4.460 17 H 0.080 0.920 18 C -0.209 4.209 19 N -0.568 5.568 20 Si 0.780 3.220 21 H -0.181 1.181 22 H -0.202 1.202 23 H -0.152 1.152 24 H 0.130 0.870 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.201 0.799 28 H 0.251 0.749 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.229 0.771 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.607 19.057 -0.044 23.416 hybrid contribution 0.181 -1.234 0.015 1.247 sum -13.426 17.823 -0.029 22.314 Atomic orbital electron populations 1.20938 0.80638 1.06504 1.06231 1.23640 0.95208 0.81601 0.91839 1.83980 1.14789 1.34610 1.70617 1.15927 0.79572 0.89413 1.17905 1.23431 0.91672 0.92038 0.92964 1.81377 1.10613 1.06739 1.10399 1.22217 0.98526 0.92186 0.96679 1.19936 0.93637 0.93866 1.18910 1.17175 0.85046 0.83796 0.75690 1.90743 1.16574 1.84584 1.52188 1.45519 1.11239 1.04781 1.74314 1.20929 0.93771 0.80341 1.05721 1.20589 0.90942 0.83124 0.82202 1.90536 1.27751 1.75473 1.56382 1.41918 1.08229 1.05340 1.66320 1.19026 0.87752 0.88546 1.50685 0.91960 1.26091 1.03464 0.95648 0.95730 1.69790 1.32464 1.05117 1.49437 0.85433 0.77384 0.79170 0.80047 1.18110 1.20150 1.15171 0.87003 0.87329 0.87444 0.79872 0.74923 0.87212 0.87107 0.77123 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 9.87 71.24 0.70 -0.19 16 2 C 0.13 2.10 7.37 25.34 0.19 2.29 16 3 O -0.15 -2.37 10.62 -1.56 -0.02 -2.39 16 4 C 0.02 0.39 7.04 23.02 0.16 0.56 16 5 C 0.31 6.25 15.87 88.33 1.40 7.65 16 6 N -0.41 -9.93 18.54 19.00 0.35 -9.58 16 7 C -0.07 -1.28 10.28 22.66 0.23 -1.04 16 8 C -0.26 -5.03 6.13 -20.30 -0.12 -5.16 16 9 C 0.59 14.44 7.82 86.68 0.68 15.12 16 10 O -0.56 -15.15 14.77 -4.02 -0.06 -15.21 16 11 N -0.71 -18.83 5.52 -470.07 -2.60 -21.43 16 12 C 0.12 3.43 6.15 85.63 0.53 3.96 16 13 C 0.44 18.06 7.85 87.66 0.69 18.74 16 14 O -0.62 -30.12 15.24 -3.08 -0.05 -30.17 16 15 N -0.58 -25.21 5.09 -306.98 -1.56 -26.77 16 16 C -0.33 -18.27 10.16 84.04 0.85 -17.42 16 17 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 18 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 19 N -0.93 -53.81 13.96 21.66 0.30 -53.51 16 20 Si 0.96 36.76 27.74 68.60 1.90 38.67 16 21 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 22 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 23 H -0.23 -7.28 6.52 99.48 0.65 -6.63 16 24 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.11 1.44 6.44 -2.38 -0.02 1.42 16 27 H 0.18 2.75 7.58 -2.91 -0.02 2.73 16 28 H 0.41 11.25 6.46 -92.70 -0.60 10.65 16 29 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 31 H 0.39 14.13 5.76 -92.71 -0.53 13.59 16 32 H 0.28 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -71.74 300.76 4.07 -67.67 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.02 Total: 28.26 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: 5.78 Total: 24.47 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.50 Total: -111.29 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -0.12 Total: -47.77 kcal Atomic # 14 Polarization: 36.76 SS G_CDS: 1.90 Total: 38.67 kcal Total: -71.74 4.07 -67.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261115940.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.309 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds