Wall clock time and date at job start Mon Mar 30 2020 02:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34610 * 125.74732 * 2 1 4 4 N 1.30850 * 107.63828 * 180.02562 * 3 2 1 5 5 C 1.34593 * 107.26801 * 359.97438 * 4 3 2 6 6 C 1.47754 * 126.04992 * 180.02562 * 5 4 3 7 7 O 1.21470 * 119.99439 * 180.02562 * 6 5 4 8 8 O 1.34711 * 120.00224 * 0.02562 * 6 5 4 9 9 C 1.45200 * 117.00068 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47321 * 329.99761 * 9 8 6 11 11 C 1.50706 * 109.46954 * 210.00210 * 9 8 6 12 12 H 1.07995 * 120.00167 * 359.72237 * 11 9 8 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 9 8 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47487 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47233 * 120.00158 * 15 13 11 18 18 H 1.48508 * 109.46883 * 239.99963 * 15 13 11 19 19 C 1.50698 * 109.46811 * 90.00292 * 9 8 6 20 20 C 1.34515 * 125.78329 * 219.99738 * 19 9 8 21 21 C 1.41387 * 106.83718 * 180.02562 * 20 19 9 22 22 C 1.34512 * 106.84034 * 359.97438 * 21 20 19 23 23 O 1.34293 * 125.79247 * 39.69618 * 19 9 8 24 24 N 1.28855 * 125.74678 * 180.32540 * 2 1 3 25 25 H 1.09010 * 109.46754 * 90.00465 * 1 2 3 26 26 H 1.08998 * 109.47768 * 210.00336 * 1 2 3 27 27 H 1.08998 * 109.47338 * 330.01151 * 1 2 3 28 28 H 1.07998 * 126.17757 * 0.02562 * 3 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 30 30 H 1.07998 * 126.58679 * 0.04046 * 20 19 9 31 31 H 1.08004 * 126.57788 * 179.97438 * 21 20 19 32 32 H 1.08001 * 125.79100 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2514 1.0925 0.0000 4 7 3.4950 0.6858 -0.0006 5 6 3.4753 -0.6600 -0.0003 6 6 4.6570 -1.5470 -0.0002 7 8 4.5111 -2.7529 -0.0005 8 8 5.8960 -1.0183 0.0001 9 6 7.0101 -1.9495 0.0008 10 1 6.7179 -2.8653 0.5147 11 6 8.1844 -1.3274 0.7116 12 1 8.1031 -0.3301 1.1178 13 6 9.3641 -2.0297 0.8386 14 7 9.4648 -3.2421 0.3390 15 14 10.8194 -1.2589 1.7202 16 1 10.4518 0.1024 2.1859 17 1 11.1921 -2.0979 2.8874 18 1 11.9716 -1.1682 0.7877 19 6 7.3960 -2.2719 -1.4198 20 6 7.7522 -3.4837 -1.8824 21 6 8.0302 -3.3307 -3.2602 22 6 7.8266 -2.0347 -3.5572 23 8 7.4372 -1.3993 -2.4398 24 7 2.2177 -1.0458 -0.0059 25 1 -0.3633 -0.0001 -1.0278 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5136 28 1 1.9163 2.1192 0.0004 29 1 10.2949 -3.7359 0.4281 30 1 7.8138 -4.3982 -1.3112 31 1 8.3454 -4.1057 -3.9432 32 1 7.9508 -1.5826 -4.5302 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:58 Heat of formation + Delta-G solvation = 37.626915 kcal Electronic energy + Delta-G solvation = -21007.856646 eV Core-core repulsion = 17552.496491 eV Total energy + Delta-G solvation = -3455.360154 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.39937 -41.29444 -39.29240 -35.73800 -34.62235 -33.21713 -31.75695 -31.65612 -29.72637 -28.08326 -26.59579 -24.45922 -22.88414 -22.16530 -20.67409 -20.28417 -19.31616 -17.96236 -16.94706 -16.77895 -16.64397 -16.22804 -15.52248 -15.02939 -14.93621 -14.58199 -14.33806 -13.52275 -13.49992 -13.02127 -12.73761 -12.01657 -11.92487 -11.73270 -11.52091 -11.26135 -11.09440 -10.93950 -10.41459 -10.36382 -10.33297 -10.13105 -9.97337 -9.55081 -9.35066 -8.77438 -8.60247 -7.21296 -6.17135 -4.34154 1.41106 2.09595 2.17745 2.89799 3.21900 3.26338 3.32951 3.40682 3.58217 3.96417 4.20813 4.23743 4.27365 4.40856 4.71617 4.84778 4.99867 5.10911 5.38106 5.86287 5.97498 6.11083 6.32237 6.37464 6.47945 6.68933 7.02134 7.15301 7.27391 7.35065 7.73216 7.73996 7.85887 7.99732 8.39297 8.54068 8.82020 9.32094 10.82133 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020217 B = 0.005386 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.626148 B = 5197.531698 C = 5965.784895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.309 5.309 3 C 0.183 3.817 4 N -0.457 5.457 5 C 0.173 3.827 6 C 0.557 3.443 7 O -0.491 6.491 8 O -0.322 6.322 9 C 0.298 3.702 10 H 0.082 0.918 11 C -0.528 4.528 12 H 0.081 0.919 13 C 0.069 3.931 14 N -0.868 5.868 15 Si 0.915 3.085 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.281 1.281 19 C 0.024 3.976 20 C -0.177 4.177 21 C -0.218 4.218 22 C -0.087 4.087 23 O -0.175 6.175 24 N -0.251 5.251 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.228 0.772 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.131 0.869 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 6.861 -2.448 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.105 5.105 3 C -0.113 4.113 4 N -0.182 5.182 5 C -0.105 4.105 6 C 0.396 3.604 7 O -0.376 6.376 8 O -0.235 6.235 9 C 0.245 3.755 10 H 0.099 0.901 11 C -0.565 4.565 12 H 0.099 0.901 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.742 3.258 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.207 1.207 19 C -0.027 4.027 20 C -0.196 4.196 21 C -0.238 4.238 22 C -0.155 4.155 23 O -0.071 6.071 24 N -0.092 5.092 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.244 0.756 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.149 0.851 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.909 6.134 -2.444 16.306 hybrid contribution 0.788 0.218 0.084 0.822 sum -14.121 6.351 -2.360 15.663 Atomic orbital electron populations 1.22217 0.72378 1.05870 1.04877 1.47441 1.09201 1.03916 1.49977 1.26644 0.85855 0.95979 1.02791 1.71470 1.19576 1.09359 1.17753 1.22646 0.90499 0.89142 1.08172 1.18865 0.83071 0.84696 0.73812 1.90845 1.86851 1.14649 1.45237 1.86702 1.13134 1.42327 1.81386 1.19340 0.80758 0.90245 0.85195 0.90089 1.20939 0.95377 1.03615 1.36564 0.90105 1.24939 0.98636 0.94917 0.95123 1.70046 1.27241 1.10484 1.42516 0.86155 0.81146 0.79524 0.79017 1.19193 1.20574 1.20695 1.23497 1.02796 0.87283 0.89112 1.21215 1.06731 0.98697 0.92994 1.21681 1.08535 0.96569 0.96974 1.23612 1.08552 0.92838 0.90475 1.84006 1.67343 1.39127 1.16649 1.74345 1.02596 1.13176 1.19073 0.89235 0.88240 0.88009 0.75622 0.92215 0.84017 0.85120 0.79894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 11.38 59.84 0.68 1.11 16 2 N -0.31 -3.56 3.72 -69.39 -0.26 -3.82 16 3 C 0.18 2.10 12.62 -90.48 -1.14 0.96 16 4 N -0.46 -8.10 11.42 -12.38 -0.14 -8.24 16 5 C 0.17 3.48 7.99 -156.34 -1.25 2.23 16 6 C 0.56 13.31 7.94 34.62 0.27 13.58 16 7 O -0.49 -12.52 16.34 -19.24 -0.31 -12.83 16 8 O -0.32 -8.36 9.86 -42.62 -0.42 -8.78 16 9 C 0.30 8.23 2.42 -29.03 -0.07 8.16 16 10 H 0.08 2.35 7.15 -51.93 -0.37 1.98 16 11 C -0.53 -15.02 8.89 -34.44 -0.31 -15.32 16 12 H 0.08 2.28 7.81 -52.49 -0.41 1.87 16 13 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 14 N -0.87 -24.35 10.95 55.43 0.61 -23.75 16 15 Si 0.92 21.31 29.54 -169.99 -5.02 16.29 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.02 0.65 5.54 -35.63 -0.20 0.46 16 20 C -0.18 -4.53 9.17 -39.70 -0.36 -4.89 16 21 C -0.22 -4.81 10.91 -39.70 -0.43 -5.25 16 22 C -0.09 -1.87 12.09 29.41 0.36 -1.52 16 23 O -0.17 -4.50 10.65 4.36 0.05 -4.46 16 24 N -0.25 -4.30 12.09 32.06 0.39 -3.91 16 25 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 26 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.23 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.14 3.68 7.87 -52.49 -0.41 3.26 16 31 H 0.13 2.43 8.06 -52.48 -0.42 2.01 16 32 H 0.18 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -36.60 299.87 -6.01 -42.61 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.87 Total: 1.04 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -2.54 Total: 1.33 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.59 Total: -39.71 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.69 Total: -26.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.60 -6.01 -42.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.232 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds