Wall clock time and date at job start Mon Mar 30 2020 01:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48499 * 109.46870 * 269.99640 * 3 2 1 5 5 H 1.48506 * 109.47021 * 29.99672 * 3 2 1 6 6 H 1.48499 * 109.47424 * 149.99625 * 3 2 1 7 7 C 1.38653 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99848 * 359.97438 * 7 2 1 9 9 O 1.34832 * 120.00145 * 180.02562 * 7 2 1 10 10 C 1.35759 * 116.99815 * 185.05702 * 9 7 2 11 11 C 1.39031 * 119.98805 * 174.17867 * 10 9 7 12 12 C 1.38221 * 120.25622 * 179.76121 * 11 10 9 13 13 C 1.38011 * 120.23284 * 0.51459 * 12 11 10 14 14 C 1.39762 * 119.97255 * 359.73657 * 13 12 11 15 15 C 1.47426 * 120.12047 * 180.02562 * 14 13 12 16 16 N 1.29883 * 120.00624 * 359.97438 * 15 14 13 17 17 N 1.40099 * 120.00130 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99742 * 180.02562 * 17 16 15 19 19 O 1.21430 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.49202 * 119.99981 * 180.02562 * 18 17 16 21 21 N 1.34777 * 119.99981 * 180.02562 * 20 18 17 22 22 O 1.21376 * 119.99905 * 0.02562 * 20 18 17 23 23 C 1.38559 * 119.99355 * 354.44929 * 10 9 7 24 24 H 0.96996 * 120.00152 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.87062 * 0.02562 * 11 10 9 26 26 H 1.07993 * 119.88235 * 180.25715 * 12 11 10 27 27 H 1.07998 * 120.01374 * 179.76618 * 13 12 11 28 28 H 1.07998 * 119.99754 * 179.97438 * 15 14 13 29 29 H 0.96995 * 120.00327 * 0.02562 * 17 16 15 30 30 H 0.96995 * 119.99931 * 359.97438 * 21 20 18 31 31 H 0.96996 * 119.99666 * 180.02562 * 21 20 18 32 32 H 1.08004 * 120.11390 * 359.95903 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4058 -0.1051 11 6 5.3564 -2.4702 -0.2328 12 6 5.9900 -3.6942 -0.3363 13 6 5.2534 -4.8613 -0.3242 14 6 3.8622 -4.8076 -0.2015 15 6 3.0722 -6.0522 -0.1876 16 7 3.6687 -7.2014 -0.2901 17 7 2.9179 -8.3841 -0.2764 18 6 3.5371 -9.5766 -0.3822 19 8 4.7457 -9.6258 -0.4890 20 6 2.7375 -10.8362 -0.3682 21 7 3.3567 -12.0287 -0.4735 22 8 1.5294 -10.7870 -0.2620 23 6 3.2236 -3.5709 -0.0917 24 1 -0.4850 0.8400 -0.0004 25 1 5.9382 -1.5603 -0.2470 26 1 7.0649 -3.7374 -0.4311 27 1 5.7518 -5.8156 -0.4091 28 1 1.9973 -6.0085 -0.0923 29 1 1.9526 -8.3449 -0.1908 30 1 4.3221 -12.0680 -0.5588 31 1 2.8368 -12.8475 -0.4648 32 1 2.1488 -3.5225 0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317866019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:32 Heat of formation + Delta-G solvation = -23.873843 kcal Electronic energy + Delta-G solvation = -19529.964603 eV Core-core repulsion = 16071.937576 eV Total energy + Delta-G solvation = -3458.027027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77659 -39.31554 -38.64262 -37.25891 -36.19368 -34.18674 -32.80566 -32.32865 -30.07863 -29.06520 -25.85115 -25.18856 -23.34510 -21.66937 -20.77837 -20.42581 -19.03861 -18.14940 -17.60128 -17.04040 -16.65298 -16.21984 -16.12802 -15.28685 -14.84010 -14.51837 -14.31610 -14.04405 -13.92578 -13.76717 -12.98408 -12.72540 -12.38459 -12.24118 -12.06858 -11.46526 -11.05138 -10.98244 -10.86719 -10.34609 -10.30839 -10.28060 -10.03852 -9.54035 -9.52408 -8.91738 -8.06247 -7.48211 -6.47649 -4.15587 0.76683 1.34468 1.80418 2.14036 2.61651 3.03999 3.18994 3.22832 3.28133 3.36796 4.13718 4.18907 4.42757 4.65307 4.77680 4.97565 5.03726 5.51250 5.59190 5.79335 5.95217 6.02171 6.12923 6.39890 6.43678 6.53268 6.73347 6.91865 7.02752 7.04878 7.17636 7.44498 7.52048 7.68288 7.94969 8.06390 8.87328 9.47681 10.59792 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030294 B = 0.003167 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.059898 B = 8839.695728 C = 9751.468270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.393 4.393 8 H 0.107 0.893 9 O -0.215 6.215 10 C 0.152 3.848 11 C -0.166 4.166 12 C -0.088 4.088 13 C -0.154 4.154 14 C -0.029 4.029 15 C 0.148 3.852 16 N -0.248 5.248 17 N -0.559 5.559 18 C 0.524 3.476 19 O -0.487 6.487 20 C 0.523 3.477 21 N -0.819 5.819 22 O -0.519 6.519 23 C -0.184 4.184 24 H 0.280 0.720 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.397 0.603 30 H 0.416 0.584 31 H 0.413 0.587 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -17.011 -0.708 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.468 4.468 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.100 3.900 11 C -0.187 4.187 12 C -0.106 4.106 13 C -0.175 4.175 14 C -0.032 4.032 15 C -0.061 4.061 16 N -0.052 5.052 17 N -0.301 5.301 18 C 0.304 3.696 19 O -0.359 6.359 20 C 0.299 3.701 21 N -0.385 5.385 22 O -0.395 6.395 23 C -0.206 4.206 24 H 0.090 0.910 25 H 0.139 0.861 26 H 0.138 0.862 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.236 0.764 30 H 0.247 0.753 31 H 0.246 0.754 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.346 -17.118 -0.780 18.644 hybrid contribution -1.092 0.536 0.084 1.220 sum 6.254 -16.582 -0.696 17.736 Atomic orbital electron populations 1.69638 1.05588 1.28612 1.47742 1.24459 0.95015 0.98888 0.95530 0.86181 0.80348 0.81386 0.79002 1.19852 1.20789 1.18293 1.20732 0.76808 0.96617 1.52663 0.87617 1.83607 1.22643 1.25219 1.80584 1.18897 0.91648 0.85386 0.94105 1.20456 0.91972 0.98236 1.08015 1.20655 0.99024 0.91529 0.99400 1.20967 0.92604 0.98339 1.05569 1.17993 0.92755 0.89157 1.03311 1.24804 0.98334 0.90584 0.92377 1.75185 1.22208 0.91916 1.15932 1.46550 1.09668 1.03441 1.70477 1.19707 0.87928 0.83408 0.78575 1.90800 1.13416 1.86661 1.44974 1.19837 0.87471 0.85402 0.77346 1.43455 1.13322 1.07239 1.74522 1.90854 1.13733 1.87332 1.47537 1.21340 1.01200 0.90554 1.07511 0.90972 0.86131 0.86236 0.85904 0.85989 0.76399 0.75339 0.75375 0.84224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 13.96 55.48 0.77 -23.72 16 2 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.90 28.62 -169.99 -4.86 16.03 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.26 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.39 -10.48 9.94 30.89 0.31 -10.17 16 8 H 0.11 2.84 5.43 -52.48 -0.29 2.55 16 9 O -0.22 -5.35 8.58 0.01 0.00 -5.35 16 10 C 0.15 3.24 6.64 -39.17 -0.26 2.98 16 11 C -0.17 -3.04 9.98 -39.29 -0.39 -3.44 16 12 C -0.09 -1.40 10.02 -39.67 -0.40 -1.80 16 13 C -0.15 -2.55 9.58 -39.10 -0.37 -2.92 16 14 C -0.03 -0.51 5.87 -105.07 -0.62 -1.12 16 15 C 0.15 2.18 10.75 -14.64 -0.16 2.03 16 16 N -0.25 -3.79 10.16 32.17 0.33 -3.47 16 17 N -0.56 -7.29 6.26 30.85 0.19 -7.10 16 18 C 0.52 6.63 8.00 -11.70 -0.09 6.54 16 19 O -0.49 -7.26 16.81 5.43 0.09 -7.17 16 20 C 0.52 5.30 8.15 -11.70 -0.10 5.20 16 21 N -0.82 -4.93 8.87 30.85 0.27 -4.66 16 22 O -0.52 -6.47 17.31 5.47 0.09 -6.38 16 23 C -0.18 -3.61 8.91 -38.95 -0.35 -3.96 16 24 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 26 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.12 1.95 7.55 -52.49 -0.40 1.56 16 28 H 0.12 1.48 8.02 -52.49 -0.42 1.06 16 29 H 0.40 4.34 8.12 -182.60 -1.48 2.86 16 30 H 0.42 1.98 8.30 -40.82 -0.34 1.64 16 31 H 0.41 1.54 8.93 -40.82 -0.36 1.17 16 32 H 0.14 2.80 5.63 -52.48 -0.30 2.50 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -31.97 301.63 -4.65 -36.62 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.56 Total: 5.66 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.52 Total: -5.02 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 1.57 Total: -38.94 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.19 Total: -18.90 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.86 Total: 16.03 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.97 -4.65 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317866019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.744 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds