Wall clock time and date at job start Mon Mar 30 2020 01:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48499 * 109.46870 * 269.99640 * 3 2 1 5 5 H 1.48506 * 109.47021 * 29.99672 * 3 2 1 6 6 H 1.48499 * 109.47424 * 149.99625 * 3 2 1 7 7 C 1.38653 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99848 * 359.97438 * 7 2 1 9 9 O 1.34832 * 120.00145 * 180.02562 * 7 2 1 10 10 C 1.35759 * 116.99815 * 185.05702 * 9 7 2 11 11 C 1.39031 * 119.98805 * 174.17867 * 10 9 7 12 12 C 1.38221 * 120.25622 * 179.76121 * 11 10 9 13 13 C 1.38011 * 120.23284 * 0.51459 * 12 11 10 14 14 C 1.39762 * 119.97255 * 359.73657 * 13 12 11 15 15 C 1.47426 * 120.12047 * 180.02562 * 14 13 12 16 16 N 1.29883 * 120.00624 * 359.97438 * 15 14 13 17 17 N 1.40099 * 120.00130 * 179.97438 * 16 15 14 18 18 C 1.34777 * 119.99742 * 180.02562 * 17 16 15 19 19 O 1.21430 * 119.99831 * 0.02562 * 18 17 16 20 20 C 1.49202 * 119.99981 * 180.02562 * 18 17 16 21 21 N 1.34777 * 119.99981 * 180.02562 * 20 18 17 22 22 O 1.21376 * 119.99905 * 0.02562 * 20 18 17 23 23 C 1.38559 * 119.99355 * 354.44929 * 10 9 7 24 24 H 0.96996 * 120.00152 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.87062 * 0.02562 * 11 10 9 26 26 H 1.07993 * 119.88235 * 180.25715 * 12 11 10 27 27 H 1.07998 * 120.01374 * 179.76618 * 13 12 11 28 28 H 1.07998 * 119.99754 * 179.97438 * 15 14 13 29 29 H 0.96995 * 120.00327 * 0.02562 * 17 16 15 30 30 H 0.96995 * 119.99931 * 359.97438 * 21 20 18 31 31 H 0.96996 * 119.99666 * 180.02562 * 21 20 18 32 32 H 1.08004 * 120.11390 * 359.95903 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1361 0.0014 9 8 3.3571 -1.2008 0.0011 10 6 3.9734 -2.4058 -0.1051 11 6 5.3564 -2.4702 -0.2328 12 6 5.9900 -3.6942 -0.3363 13 6 5.2534 -4.8613 -0.3242 14 6 3.8622 -4.8076 -0.2015 15 6 3.0722 -6.0522 -0.1876 16 7 3.6687 -7.2014 -0.2901 17 7 2.9179 -8.3841 -0.2764 18 6 3.5371 -9.5766 -0.3822 19 8 4.7457 -9.6258 -0.4890 20 6 2.7375 -10.8362 -0.3682 21 7 3.3567 -12.0287 -0.4735 22 8 1.5294 -10.7870 -0.2620 23 6 3.2236 -3.5709 -0.0917 24 1 -0.4850 0.8400 -0.0004 25 1 5.9382 -1.5603 -0.2470 26 1 7.0649 -3.7374 -0.4311 27 1 5.7518 -5.8156 -0.4091 28 1 1.9973 -6.0085 -0.0923 29 1 1.9526 -8.3449 -0.1908 30 1 4.3221 -12.0680 -0.5588 31 1 2.8368 -12.8475 -0.4648 32 1 2.1488 -3.5225 0.0038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317866019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:31 Heat of formation + Delta-G solvation = -49.447948 kcal Electronic energy + Delta-G solvation = -19531.073579 eV Core-core repulsion = 16071.937576 eV Total energy + Delta-G solvation = -3459.136004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.71700 -40.88459 -39.63180 -38.68521 -37.49638 -34.95128 -34.44900 -33.81301 -31.44619 -30.56507 -27.33366 -26.61581 -24.56932 -23.18492 -21.74944 -21.74608 -20.01644 -19.83367 -18.84759 -18.36333 -17.64273 -17.18339 -17.08443 -16.83868 -16.43316 -15.71599 -15.57090 -15.46063 -15.34534 -15.24212 -14.44651 -14.14481 -13.99699 -13.96065 -13.04362 -13.00744 -12.57075 -12.52872 -12.45446 -11.98618 -11.53965 -11.33405 -11.02520 -11.00963 -10.94199 -10.65594 -9.44239 -9.04372 -8.45846 -6.18424 -0.40303 0.25809 0.66996 0.83644 1.35269 1.36665 1.41791 1.56178 2.04942 2.31749 2.40737 2.83141 3.07321 3.19365 3.39615 3.52791 3.85946 4.22582 4.26587 4.35191 4.55230 4.72060 4.95124 5.10905 5.36164 5.41092 5.54964 5.59087 5.68097 5.77797 5.87884 5.89392 6.15088 6.19240 6.85357 6.89046 6.99614 7.62131 8.65262 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.030294 B = 0.003167 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.059898 B = 8839.695728 C = 9751.468270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.397 4.397 8 H 0.088 0.912 9 O -0.242 6.242 10 C 0.117 3.883 11 C -0.165 4.165 12 C -0.075 4.075 13 C -0.143 4.143 14 C -0.029 4.029 15 C 0.145 3.855 16 N -0.260 5.260 17 N -0.557 5.557 18 C 0.523 3.477 19 O -0.511 6.511 20 C 0.531 3.469 21 N -0.791 5.791 22 O -0.545 6.545 23 C -0.194 4.194 24 H 0.283 0.717 25 H 0.137 0.863 26 H 0.162 0.838 27 H 0.137 0.863 28 H 0.144 0.856 29 H 0.408 0.592 30 H 0.425 0.575 31 H 0.429 0.571 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.738 -18.663 -0.921 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.473 4.473 8 H 0.105 0.895 9 O -0.150 6.150 10 C 0.068 3.932 11 C -0.185 4.185 12 C -0.093 4.093 13 C -0.163 4.163 14 C -0.032 4.032 15 C -0.064 4.064 16 N -0.065 5.065 17 N -0.300 5.300 18 C 0.304 3.696 19 O -0.383 6.383 20 C 0.307 3.693 21 N -0.358 5.358 22 O -0.422 6.422 23 C -0.216 4.216 24 H 0.093 0.907 25 H 0.154 0.846 26 H 0.180 0.820 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.249 0.751 30 H 0.258 0.742 31 H 0.264 0.736 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.536 -18.846 -0.998 21.145 hybrid contribution -1.543 0.660 0.122 1.682 sum 7.993 -18.186 -0.876 19.884 Atomic orbital electron populations 1.69721 1.06879 1.29502 1.50282 1.25223 0.95797 1.02059 0.95657 0.85267 0.78954 0.77689 0.79169 1.19254 1.19699 1.18432 1.20721 0.78036 0.96211 1.52376 0.89476 1.83555 1.21269 1.26970 1.83179 1.19441 0.93113 0.84955 0.95722 1.20776 0.90671 1.00046 1.07001 1.21100 1.01049 0.90066 0.97065 1.21307 0.92313 0.99316 1.03378 1.18122 0.93464 0.89195 1.02399 1.24700 0.99181 0.89723 0.92802 1.75035 1.23575 0.92613 1.15251 1.46555 1.10261 1.02924 1.70302 1.20252 0.87871 0.83962 0.77503 1.90786 1.14476 1.87079 1.46001 1.19395 0.86785 0.85392 0.77751 1.43316 1.13968 1.06483 1.72075 1.90861 1.14485 1.87463 1.49427 1.21297 1.00627 0.91379 1.08251 0.90694 0.84559 0.82020 0.84481 0.83898 0.75132 0.74237 0.73573 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.96 21.61 0.30 -53.10 16 2 C 0.01 0.62 5.49 84.83 0.47 1.09 16 3 Si 0.97 43.82 28.62 68.60 1.96 45.78 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.40 -22.09 9.94 67.92 0.68 -21.41 16 8 H 0.09 4.99 5.43 -2.91 -0.02 4.97 16 9 O -0.24 -12.32 8.58 -22.86 -0.20 -12.51 16 10 C 0.12 5.02 6.64 22.54 0.15 5.17 16 11 C -0.16 -5.73 9.98 22.46 0.22 -5.50 16 12 C -0.08 -2.14 10.02 22.21 0.22 -1.92 16 13 C -0.14 -4.32 9.58 22.58 0.22 -4.11 16 14 C -0.03 -0.97 5.87 -20.16 -0.12 -1.09 16 15 C 0.15 4.11 10.75 87.40 0.94 5.05 16 16 N -0.26 -7.51 10.16 -52.15 -0.53 -8.04 16 17 N -0.56 -13.67 6.26 -174.63 -1.09 -14.76 16 18 C 0.52 12.34 8.00 87.19 0.70 13.04 16 19 O -0.51 -14.29 16.81 -3.50 -0.06 -14.35 16 20 C 0.53 9.71 8.15 87.19 0.71 10.43 16 21 N -0.79 -7.47 8.87 -174.67 -1.55 -9.02 16 22 O -0.54 -12.68 17.31 -3.33 -0.06 -12.74 16 23 C -0.19 -7.73 8.91 22.68 0.20 -7.53 16 24 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 25 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 26 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 27 H 0.14 3.87 7.55 -2.91 -0.02 3.85 16 28 H 0.14 3.36 8.02 -2.91 -0.02 3.34 16 29 H 0.41 8.38 8.12 -213.33 -1.73 6.65 16 30 H 0.43 2.90 8.30 -92.71 -0.77 2.13 16 31 H 0.43 1.96 8.93 -92.71 -0.83 1.13 16 32 H 0.13 5.30 5.63 -2.91 -0.02 5.28 16 Total: -1.00 -70.34 301.63 1.06 -69.28 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -2.10 Total: 16.25 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: 4.39 Total: -6.78 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.87 Total: -84.92 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.31 Total: -39.60 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.96 Total: 45.78 kcal Total: -70.34 1.06 -69.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317866019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.828 kcal (2) G-P(sol) polarization free energy of solvation -70.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds