Wall clock time and date at job start Mon Mar 30 2020 01:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38319 * 120.35441 * 2 1 4 4 C 1.37698 * 120.54648 * 179.89599 * 3 2 1 5 5 C 1.39603 * 121.05251 * 0.02562 * 4 3 2 6 6 C 1.38884 * 117.80036 * 0.21619 * 5 4 3 7 7 C 1.38027 * 120.35362 * 180.02562 * 2 1 3 8 8 S 1.77427 * 108.27920 * 179.66404 * 6 5 4 9 9 C 1.83297 * 96.59881 * 344.56507 * 8 6 5 10 10 H 1.08999 * 111.13533 * 266.91756 * 9 8 6 11 11 C 1.50699 * 111.10143 * 142.83448 * 9 8 6 12 12 O 1.21292 * 120.00650 * 283.30496 * 11 9 8 13 13 N 1.34777 * 119.99787 * 103.29654 * 11 9 8 14 14 C 1.46498 * 120.00150 * 0.02562 * 13 11 9 15 15 C 1.37098 * 119.99944 * 180.02562 * 13 11 9 16 16 H 1.08004 * 120.00026 * 322.73098 * 15 13 11 17 17 C 1.38952 * 120.00007 * 142.72859 * 15 13 11 18 18 N 1.31413 * 120.00170 * 158.47707 * 17 15 13 19 19 Si 1.86798 * 120.00045 * 338.47776 * 17 15 13 20 20 H 1.48501 * 109.47057 * 95.73283 * 19 17 15 21 21 H 1.48505 * 109.47199 * 215.73487 * 19 17 15 22 22 H 1.48496 * 109.47107 * 335.73154 * 19 17 15 23 23 C 1.50872 * 126.81977 * 180.24436 * 5 4 3 24 24 H 1.08992 * 109.47435 * 89.99642 * 1 2 3 25 25 H 1.09004 * 109.46817 * 210.00105 * 1 2 3 26 26 H 1.09001 * 109.47243 * 329.99438 * 1 2 3 27 27 H 1.08001 * 119.72776 * 359.92133 * 3 2 1 28 28 H 1.07998 * 119.47125 * 179.97438 * 4 3 2 29 29 H 1.08000 * 119.91476 * 0.02562 * 7 2 1 30 30 H 1.09000 * 109.46719 * 85.06159 * 14 13 11 31 31 H 1.09002 * 109.47365 * 205.06453 * 14 13 11 32 32 H 1.09000 * 109.46768 * 325.06354 * 14 13 11 33 33 H 0.96995 * 120.00199 * 180.02562 * 18 17 15 34 34 H 1.09002 * 109.27257 * 79.94222 * 23 5 4 35 35 H 1.08999 * 109.27119 * 320.52963 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1936 0.0000 4 6 3.5830 1.1982 0.0022 5 6 4.3071 0.0046 0.0038 6 6 3.5927 -1.1864 -0.0013 7 6 2.2045 -1.1911 -0.0005 8 16 4.7513 -2.5302 -0.0077 9 6 6.2180 -1.5414 -0.4882 10 1 6.3585 -1.5466 -1.5691 11 6 7.4563 -2.0290 0.2189 12 8 7.6397 -1.7478 1.3844 13 7 8.3600 -2.7777 -0.4439 14 6 8.1389 -3.1170 -1.8517 15 6 9.4863 -3.2217 0.1995 16 1 9.9814 -2.5883 0.9208 17 6 9.9910 -4.4866 -0.0764 18 7 11.2489 -4.7634 0.1844 19 14 8.8813 -5.7936 -0.8179 20 1 9.0518 -5.8088 -2.2930 21 1 9.2436 -7.1230 -0.2639 22 1 7.4665 -5.4880 -0.4861 23 6 5.8087 -0.1419 0.0114 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6674 2.1297 -0.0013 28 1 4.1112 2.1402 0.0017 29 1 1.6689 -2.1289 -0.0014 30 1 8.5043 -2.3067 -2.4825 31 1 8.6748 -4.0351 -2.0928 32 1 7.0729 -3.2618 -2.0274 33 1 11.6012 -5.6463 -0.0086 34 1 6.1789 0.0002 1.0267 35 1 6.2473 0.6148 -0.6390 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318170179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:36 Heat of formation + Delta-G solvation = 5.232924 kcal Electronic energy + Delta-G solvation = -18751.676705 eV Core-core repulsion = 15841.205057 eV Total energy + Delta-G solvation = -2910.471649 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59979 -38.77934 -35.24656 -34.54796 -32.20983 -31.27653 -30.77188 -27.46665 -26.49001 -25.07053 -23.55086 -22.76316 -20.80576 -19.00499 -17.28168 -17.08345 -16.67581 -15.67065 -15.52426 -15.42872 -14.85630 -14.15031 -14.06785 -13.73620 -13.58897 -13.07668 -12.78575 -12.75738 -12.50038 -12.36105 -12.24326 -12.08807 -11.89015 -11.63585 -11.20452 -10.97299 -10.82620 -10.42702 -9.98835 -9.98209 -9.61960 -9.17733 -8.76273 -8.57824 -7.85854 -7.24668 -6.48542 -4.05910 1.12782 1.27709 1.53324 2.36327 2.99693 3.19713 3.26048 3.55829 3.78394 4.05645 4.14023 4.60452 4.67483 4.80909 4.84357 4.93230 5.10923 5.18772 5.26238 5.40034 5.41617 5.50156 5.59034 5.71416 5.72638 5.83656 5.94298 6.00921 6.17542 6.20330 6.22813 6.32562 6.46035 6.84676 7.42622 8.15432 8.37909 8.83560 9.19457 9.61079 10.62662 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.037690 B = 0.004641 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.729075 B = 6031.092113 C = 6449.096692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.091 4.091 5 C -0.101 4.101 6 C -0.078 4.078 7 C -0.090 4.090 8 S -0.106 6.106 9 C -0.077 4.077 10 H 0.114 0.886 11 C 0.476 3.524 12 O -0.547 6.547 13 N -0.456 5.456 14 C 0.057 3.943 15 C -0.318 4.318 16 H 0.109 0.891 17 C 0.063 3.937 18 N -0.857 5.857 19 Si 0.876 3.124 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.261 1.261 23 C -0.078 4.078 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.276 0.724 34 H 0.112 0.888 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.903 8.654 -5.757 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.191 4.191 7 C -0.114 4.114 8 S 0.138 5.862 9 C -0.209 4.209 10 H 0.132 0.868 11 C 0.262 3.738 12 O -0.428 6.428 13 N -0.177 5.177 14 C -0.087 4.087 15 C -0.445 4.445 16 H 0.127 0.873 17 C -0.144 4.144 18 N -0.493 5.493 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.185 1.185 23 C -0.116 4.116 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.618 7.294 -4.932 19.695 hybrid contribution -0.288 0.407 -0.802 0.944 sum -17.906 7.701 -5.734 20.318 Atomic orbital electron populations 1.20741 0.90754 1.02836 1.02335 1.19770 0.95903 0.92629 0.99614 1.20771 0.93669 0.97601 1.02460 1.20767 0.93793 0.96705 0.99859 1.20908 0.94701 0.93349 1.01694 1.22244 0.96626 0.96311 1.03896 1.20229 0.90818 0.98141 1.02260 1.86349 1.01097 1.11685 1.87020 1.24158 0.96051 0.96660 1.04009 0.86782 1.19170 0.82748 0.85148 0.86755 1.90573 1.76507 1.59761 1.15928 1.43606 1.19326 1.46757 1.08014 1.22120 1.00296 1.01595 0.84649 1.19085 1.00057 1.00471 1.24928 0.87340 1.25360 0.95364 0.97286 0.96428 1.69740 1.12007 1.22473 1.45068 0.86963 0.82666 0.81582 0.78462 1.20061 1.21131 1.18472 1.20865 0.90666 0.94939 1.05177 0.91116 0.91463 0.91434 0.85837 0.85929 0.85734 0.92532 0.91159 0.92488 0.91358 0.87001 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.03 36.01 0.36 -0.48 16 2 C -0.08 -0.85 5.88 -104.67 -0.62 -1.47 16 3 C -0.12 -1.34 9.67 -39.75 -0.38 -1.73 16 4 C -0.09 -1.11 9.97 -39.27 -0.39 -1.51 16 5 C -0.10 -1.50 5.98 -103.79 -0.62 -2.12 16 6 C -0.08 -1.22 6.48 -39.13 -0.25 -1.47 16 7 C -0.09 -1.19 9.73 -39.44 -0.38 -1.57 16 8 S -0.11 -1.93 22.54 -107.50 -2.42 -4.35 16 9 C -0.08 -1.40 3.04 -27.29 -0.08 -1.49 16 10 H 0.11 1.80 6.36 -51.93 -0.33 1.47 16 11 C 0.48 11.16 6.81 -10.99 -0.07 11.09 16 12 O -0.55 -14.79 15.76 5.55 0.09 -14.70 16 13 N -0.46 -11.08 2.58 -122.19 -0.32 -11.40 16 14 C 0.06 1.12 8.36 59.85 0.50 1.62 16 15 C -0.32 -9.00 9.37 -14.93 -0.14 -9.14 16 16 H 0.11 3.42 7.91 -52.48 -0.41 3.01 16 17 C 0.06 1.72 5.29 -17.47 -0.09 1.63 16 18 N -0.86 -24.57 13.96 55.50 0.77 -23.79 16 19 Si 0.88 20.58 24.96 -169.99 -4.24 16.34 16 20 H -0.27 -5.91 6.70 56.52 0.38 -5.53 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.08 -1.26 5.83 -27.21 -0.16 -1.42 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 27 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.46 3.44 -51.93 -0.18 1.28 16 32 H 0.06 0.97 6.66 -51.93 -0.35 0.63 16 33 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.11 2.03 6.99 -51.93 -0.36 1.67 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -32.14 301.60 -8.08 -40.22 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -4.17 Total: 1.19 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.34 Total: -8.06 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.46 Total: -35.19 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.09 Total: -14.70 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.24 Total: 16.34 kcal Atomic # 16 Polarization: -1.93 SS G_CDS: -2.42 Total: -4.35 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.14 -8.08 -40.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318170179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.453 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds