Wall clock time and date at job start Mon Mar 30 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38317 * 120.35105 * 2 1 4 4 C 1.37706 * 120.54174 * 180.39010 * 3 2 1 5 5 C 1.39603 * 121.05365 * 359.50564 * 4 3 2 6 6 C 1.38887 * 117.79944 * 359.96116 * 5 4 3 7 7 C 1.38030 * 120.35270 * 179.76970 * 2 1 3 8 8 S 1.77436 * 108.28666 * 180.69030 * 6 5 4 9 9 C 1.83296 * 96.61962 * 15.01759 * 8 6 5 10 10 H 1.08997 * 111.10082 * 217.23628 * 9 8 6 11 11 C 1.50699 * 111.10041 * 93.13564 * 9 8 6 12 12 O 1.21277 * 120.00256 * 276.45442 * 11 9 8 13 13 N 1.34776 * 119.99658 * 96.45684 * 11 9 8 14 14 C 1.46500 * 120.00036 * 179.97438 * 13 11 9 15 15 C 1.50696 * 109.47371 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99815 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99553 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00347 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46788 * 89.99683 * 19 17 15 21 21 H 1.48494 * 109.46995 * 210.00022 * 19 17 15 22 22 H 1.48494 * 109.46931 * 330.00219 * 19 17 15 23 23 C 1.50867 * 126.84252 * 179.59138 * 5 4 3 24 24 H 1.08993 * 109.47615 * 270.22698 * 1 2 3 25 25 H 1.09000 * 109.47435 * 30.23130 * 1 2 3 26 26 H 1.09010 * 109.47240 * 150.22323 * 1 2 3 27 27 H 1.07996 * 119.73671 * 0.17178 * 3 2 1 28 28 H 1.08002 * 119.47725 * 179.79325 * 4 3 2 29 29 H 1.07996 * 119.92174 * 0.02562 * 7 2 1 30 30 H 0.97002 * 120.00661 * 359.97438 * 13 11 9 31 31 H 1.09003 * 109.46867 * 299.99992 * 14 13 11 32 32 H 1.09003 * 109.47113 * 59.99801 * 14 13 11 33 33 H 0.97000 * 119.99697 * 180.02562 * 18 17 15 34 34 H 1.09004 * 109.28546 * 279.74531 * 23 5 4 35 35 H 1.09001 * 109.28578 * 39.19381 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1936 0.0000 4 6 3.5829 1.1982 -0.0081 5 6 4.3071 0.0047 -0.0061 6 6 3.5927 -1.1864 0.0051 7 6 2.2045 -1.1911 0.0048 8 16 4.7512 -2.5302 0.0254 9 6 6.2193 -1.5366 0.4913 10 1 7.1135 -1.8949 -0.0186 11 6 6.4164 -1.5275 1.9853 12 8 5.8009 -0.7412 2.6734 13 7 7.2768 -2.3933 2.5567 14 6 7.4689 -2.3842 4.0090 15 6 8.4741 -3.4406 4.3894 16 1 8.9251 -4.0568 3.6257 17 6 8.8188 -3.6196 5.7124 18 7 9.6957 -4.5418 6.0444 19 14 8.0392 -2.5533 7.0333 20 1 6.7987 -3.2039 7.5263 21 1 8.9918 -2.3856 8.1601 22 1 7.7074 -1.2228 6.4634 23 6 5.8084 -0.1425 -0.0227 24 1 -0.3634 0.0041 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8921 -0.5104 27 1 1.6673 2.1297 0.0028 28 1 4.1112 2.1402 -0.0113 29 1 1.6690 -2.1289 0.0081 30 1 7.7689 -3.0226 2.0064 31 1 7.8339 -1.4057 4.3210 32 1 6.5195 -2.5922 4.5024 33 1 9.9379 -4.6681 6.9752 34 1 6.1716 -0.0134 -1.0424 35 1 6.2522 0.6216 0.6154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320933079.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:42 Heat of formation + Delta-G solvation = -18.992510 kcal Electronic energy + Delta-G solvation = -18370.088094 eV Core-core repulsion = 15458.565952 eV Total energy + Delta-G solvation = -2911.522142 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.79217 -38.87366 -35.06623 -34.27365 -32.42677 -31.47398 -30.87940 -28.41272 -26.79067 -24.18420 -23.15700 -21.87114 -20.85955 -19.98030 -17.73806 -17.40077 -16.25712 -15.75182 -15.60871 -15.12631 -14.93917 -14.38908 -14.15960 -13.99311 -13.54331 -13.39025 -13.09200 -12.82270 -12.46510 -12.35054 -12.30553 -12.07635 -11.73874 -11.53004 -11.08781 -11.03831 -10.79387 -10.31952 -10.00205 -9.75343 -9.52976 -9.40009 -8.80665 -8.66079 -8.23503 -7.42829 -6.23552 -4.26153 1.03612 1.23259 1.41068 2.07207 3.25250 3.31870 3.35356 3.40282 3.53310 3.71313 4.31446 4.31833 4.50653 4.74336 4.77016 4.97286 5.08009 5.11667 5.20590 5.26299 5.41684 5.43870 5.50096 5.55617 5.68473 5.82722 5.97909 6.16427 6.28032 6.43854 6.74851 6.81504 7.02590 7.12427 7.33741 8.05953 8.43631 8.69267 8.81576 9.35947 10.88343 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.004103 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.715902 B = 6821.937635 C = 7129.444758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.077 4.077 3 C -0.120 4.120 4 C -0.089 4.089 5 C -0.088 4.088 6 C -0.078 4.078 7 C -0.087 4.087 8 S -0.104 6.104 9 C -0.086 4.086 10 H 0.138 0.862 11 C 0.512 3.488 12 O -0.541 6.541 13 N -0.694 5.694 14 C 0.221 3.779 15 C -0.544 4.544 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.891 5.891 19 Si 0.876 3.124 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.261 1.261 23 C -0.068 4.068 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.398 0.602 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.268 0.732 34 H 0.098 0.902 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 9.550 -15.660 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.109 4.109 5 C -0.094 4.094 6 C -0.190 4.190 7 C -0.110 4.110 8 S 0.139 5.861 9 C -0.217 4.217 10 H 0.156 0.844 11 C 0.293 3.707 12 O -0.419 6.419 13 N -0.343 5.343 14 C 0.099 3.901 15 C -0.582 4.582 16 H 0.098 0.902 17 C -0.125 4.125 18 N -0.528 5.528 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.186 1.186 23 C -0.106 4.106 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.231 0.769 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.656 8.666 -15.206 22.200 hybrid contribution 0.128 1.299 0.832 1.548 sum -13.529 9.965 -14.374 22.112 Atomic orbital electron populations 1.20748 0.90672 1.02752 1.02542 1.19772 0.95985 0.92592 0.99558 1.20796 0.93705 0.97668 1.01824 1.20742 0.93825 0.96692 0.99621 1.20716 0.94292 0.93352 1.01011 1.22059 0.96619 0.95686 1.04682 1.20234 0.90838 0.98213 1.01764 1.86104 1.01944 1.12503 1.85526 1.24275 1.00459 0.98579 0.98435 0.84429 1.19847 0.80667 0.81997 0.88159 1.90686 1.47770 1.39891 1.63602 1.46131 1.41699 1.35709 1.10740 1.19540 0.96944 0.97897 0.75706 1.21069 1.24236 1.18424 0.94497 0.90174 1.24787 0.94429 0.94929 0.98401 1.69880 1.32073 1.32398 1.18484 0.86823 0.79521 0.81865 0.81529 1.19784 1.20833 1.18554 1.20716 0.91910 0.95322 1.02698 0.90967 0.91415 0.91463 0.85748 0.85933 0.85701 0.76868 0.95536 0.95985 0.92216 0.88347 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.03 36.00 0.36 -0.52 16 2 C -0.08 -0.87 5.88 -104.67 -0.62 -1.49 16 3 C -0.12 -1.33 9.67 -39.75 -0.38 -1.71 16 4 C -0.09 -1.09 9.97 -39.27 -0.39 -1.48 16 5 C -0.09 -1.24 5.87 -103.79 -0.61 -1.85 16 6 C -0.08 -1.15 6.48 -39.12 -0.25 -1.41 16 7 C -0.09 -1.14 9.73 -39.44 -0.38 -1.52 16 8 S -0.10 -1.54 22.54 -107.50 -2.42 -3.96 16 9 C -0.09 -1.23 3.83 -27.28 -0.10 -1.33 16 10 H 0.14 1.52 8.14 -51.93 -0.42 1.09 16 11 C 0.51 9.82 6.99 -10.99 -0.08 9.74 16 12 O -0.54 -12.36 16.14 5.56 0.09 -12.27 16 13 N -0.69 -14.12 5.55 -61.47 -0.34 -14.46 16 14 C 0.22 5.45 4.50 -5.20 -0.02 5.43 16 15 C -0.54 -14.92 9.83 -34.44 -0.34 -15.26 16 16 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -26.45 13.96 55.43 0.77 -25.67 16 19 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 23 C -0.07 -0.88 5.45 -27.20 -0.15 -1.02 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 26 H 0.07 0.47 8.09 -51.92 -0.42 0.05 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.40 7.09 8.32 -40.82 -0.34 6.75 16 31 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 32 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 33 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.32 7.67 -51.93 -0.40 0.92 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -32.92 311.81 -9.40 -42.32 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.46 Total: 2.82 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.07 Total: -10.30 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.43 Total: -40.13 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.42 Total: -3.96 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.92 -9.40 -42.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320933079.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.330 kcal (2) G-P(sol) polarization free energy of solvation -32.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds