Wall clock time and date at job start Mon Mar 30 2020 01:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38317 * 120.35105 * 2 1 4 4 C 1.37706 * 120.54174 * 180.39010 * 3 2 1 5 5 C 1.39603 * 121.05365 * 359.50564 * 4 3 2 6 6 C 1.38887 * 117.79944 * 359.96116 * 5 4 3 7 7 C 1.38030 * 120.35270 * 179.76970 * 2 1 3 8 8 S 1.77436 * 108.28666 * 180.69030 * 6 5 4 9 9 C 1.83296 * 96.61962 * 15.01759 * 8 6 5 10 10 H 1.08997 * 111.10082 * 217.23628 * 9 8 6 11 11 C 1.50699 * 111.10041 * 93.13564 * 9 8 6 12 12 O 1.21277 * 120.00256 * 276.45442 * 11 9 8 13 13 N 1.34776 * 119.99658 * 96.45684 * 11 9 8 14 14 C 1.46500 * 120.00036 * 179.97438 * 13 11 9 15 15 C 1.50696 * 109.47371 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.37881 * 119.99815 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99553 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00347 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46788 * 89.99683 * 19 17 15 21 21 H 1.48494 * 109.46995 * 210.00022 * 19 17 15 22 22 H 1.48494 * 109.46931 * 330.00219 * 19 17 15 23 23 C 1.50867 * 126.84252 * 179.59138 * 5 4 3 24 24 H 1.08993 * 109.47615 * 270.22698 * 1 2 3 25 25 H 1.09000 * 109.47435 * 30.23130 * 1 2 3 26 26 H 1.09010 * 109.47240 * 150.22323 * 1 2 3 27 27 H 1.07996 * 119.73671 * 0.17178 * 3 2 1 28 28 H 1.08002 * 119.47725 * 179.79325 * 4 3 2 29 29 H 1.07996 * 119.92174 * 0.02562 * 7 2 1 30 30 H 0.97002 * 120.00661 * 359.97438 * 13 11 9 31 31 H 1.09003 * 109.46867 * 299.99992 * 14 13 11 32 32 H 1.09003 * 109.47113 * 59.99801 * 14 13 11 33 33 H 0.97000 * 119.99697 * 180.02562 * 18 17 15 34 34 H 1.09004 * 109.28546 * 279.74531 * 23 5 4 35 35 H 1.09001 * 109.28578 * 39.19381 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1936 0.0000 4 6 3.5829 1.1982 -0.0081 5 6 4.3071 0.0047 -0.0061 6 6 3.5927 -1.1864 0.0051 7 6 2.2045 -1.1911 0.0048 8 16 4.7512 -2.5302 0.0254 9 6 6.2193 -1.5366 0.4913 10 1 7.1135 -1.8949 -0.0186 11 6 6.4164 -1.5275 1.9853 12 8 5.8009 -0.7412 2.6734 13 7 7.2768 -2.3933 2.5567 14 6 7.4689 -2.3842 4.0090 15 6 8.4741 -3.4406 4.3894 16 1 8.9251 -4.0568 3.6257 17 6 8.8188 -3.6196 5.7124 18 7 9.6957 -4.5418 6.0444 19 14 8.0392 -2.5533 7.0333 20 1 6.7987 -3.2039 7.5263 21 1 8.9918 -2.3856 8.1601 22 1 7.7074 -1.2228 6.4634 23 6 5.8084 -0.1425 -0.0227 24 1 -0.3634 0.0041 1.0276 25 1 -0.3634 0.8879 -0.5174 26 1 -0.3634 -0.8921 -0.5104 27 1 1.6673 2.1297 0.0028 28 1 4.1112 2.1402 -0.0113 29 1 1.6690 -2.1289 0.0081 30 1 7.7689 -3.0226 2.0064 31 1 7.8339 -1.4057 4.3210 32 1 6.5195 -2.5922 4.5024 33 1 9.9379 -4.6681 6.9752 34 1 6.1716 -0.0134 -1.0424 35 1 6.2522 0.6216 0.6154 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320933079.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:42 Heat of formation + Delta-G solvation = -39.808142 kcal Electronic energy + Delta-G solvation = -18370.990728 eV Core-core repulsion = 15458.565952 eV Total energy + Delta-G solvation = -2912.424776 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.01506 -40.14132 -36.41875 -35.78158 -34.46660 -32.46584 -31.82921 -30.15990 -27.91331 -25.35261 -24.29204 -23.50375 -21.93046 -21.45663 -19.41939 -18.51788 -18.03773 -17.21501 -16.61900 -16.45478 -16.30013 -15.93816 -15.32900 -15.23617 -14.76622 -14.56097 -14.46785 -14.11334 -14.03506 -13.80461 -13.22999 -13.07530 -12.91809 -12.79924 -12.66429 -12.42491 -12.00211 -11.95845 -11.69413 -11.47916 -11.06884 -10.94416 -10.58433 -10.02881 -9.56834 -8.53372 -8.41993 -6.49396 0.00198 0.28259 0.37914 0.98316 1.31073 1.33132 1.45240 1.88029 2.20576 2.26463 2.62482 2.93203 3.26671 3.55453 3.67845 3.90294 3.96557 4.11920 4.33422 4.37991 4.53718 4.61006 4.68310 4.74179 4.84020 4.91398 4.96753 4.97867 5.21400 5.22818 5.25642 5.38159 5.41208 5.57477 5.95710 6.04160 6.50392 6.70772 7.10207 7.26668 8.72662 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027054 B = 0.004103 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.715902 B = 6821.937635 C = 7129.444758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.109 4.109 6 C -0.107 4.107 7 C -0.105 4.105 8 S -0.123 6.123 9 C -0.076 4.076 10 H 0.174 0.826 11 C 0.512 3.488 12 O -0.579 6.579 13 N -0.696 5.696 14 C 0.233 3.767 15 C -0.547 4.547 16 H 0.060 0.940 17 C 0.028 3.972 18 N -0.930 5.930 19 Si 0.936 3.064 20 H -0.267 1.267 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.066 4.066 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.155 0.845 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.410 0.590 31 H 0.018 0.982 32 H 0.009 0.991 33 H 0.273 0.727 34 H 0.133 0.867 35 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 11.227 -16.540 24.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.219 4.219 7 C -0.128 4.128 8 S 0.119 5.881 9 C -0.207 4.207 10 H 0.191 0.809 11 C 0.296 3.704 12 O -0.459 6.459 13 N -0.345 5.345 14 C 0.110 3.890 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.173 4.173 18 N -0.568 5.568 19 Si 0.760 3.240 20 H -0.192 1.192 21 H -0.196 1.196 22 H -0.184 1.184 23 C -0.104 4.104 24 H 0.095 0.905 25 H 0.106 0.894 26 H 0.093 0.907 27 H 0.173 0.827 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.245 0.755 31 H 0.036 0.964 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.151 0.849 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.993 10.338 -16.126 24.325 hybrid contribution 0.470 0.778 1.051 1.389 sum -14.523 11.115 -15.075 23.701 Atomic orbital electron populations 1.20816 0.88279 1.04203 1.03215 1.20202 0.97756 0.92021 0.98177 1.21234 0.93568 0.98895 1.00260 1.21102 0.94610 0.96982 0.99243 1.21017 0.94979 0.93789 1.01687 1.22273 0.97324 0.95644 1.06635 1.20531 0.90620 0.99433 1.02233 1.86094 1.02810 1.13671 1.85478 1.24301 1.01800 1.00062 0.94533 0.80911 1.20632 0.79071 0.80451 0.90278 1.90658 1.48861 1.41192 1.65238 1.45983 1.42594 1.36715 1.09208 1.19126 0.95229 0.96277 0.78380 1.21264 1.24401 1.18586 0.94278 0.92152 1.25584 0.94891 0.96110 1.00689 1.69979 1.33500 1.34017 1.19333 0.85874 0.78943 0.80095 0.79092 1.19214 1.19569 1.18427 1.20794 0.91481 0.93750 1.04375 0.90516 0.89400 0.90676 0.82745 0.83958 0.85155 0.75467 0.96440 0.97349 0.91779 0.84898 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.03 71.24 0.71 -0.73 16 2 C -0.08 -1.64 5.88 -19.90 -0.12 -1.76 16 3 C -0.12 -2.35 9.67 22.16 0.21 -2.14 16 4 C -0.10 -2.25 9.97 22.47 0.22 -2.02 16 5 C -0.11 -2.93 5.87 -19.33 -0.11 -3.04 16 6 C -0.11 -3.08 6.48 22.57 0.15 -2.93 16 7 C -0.10 -2.66 9.73 22.36 0.22 -2.44 16 8 S -0.12 -3.58 22.54 -56.49 -1.27 -4.85 16 9 C -0.08 -2.06 3.83 30.24 0.12 -1.94 16 10 H 0.17 3.37 8.14 -2.39 -0.02 3.35 16 11 C 0.51 19.36 6.99 87.66 0.61 19.98 16 12 O -0.58 -26.40 16.14 -3.02 -0.05 -26.45 16 13 N -0.70 -28.13 5.55 -466.79 -2.59 -30.72 16 14 C 0.23 11.56 4.50 85.63 0.38 11.94 16 15 C -0.55 -30.36 9.83 25.60 0.25 -30.11 16 16 H 0.06 3.51 7.84 -2.91 -0.02 3.48 16 17 C 0.03 1.58 5.47 84.65 0.46 2.04 16 18 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 19 Si 0.94 44.29 27.47 68.60 1.88 46.17 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.26 -12.16 6.54 99.48 0.65 -11.51 16 23 C -0.07 -1.58 5.45 30.29 0.17 -1.41 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 0.82 8.09 -2.39 -0.02 0.81 16 26 H 0.07 0.88 8.09 -2.38 -0.02 0.87 16 27 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.41 14.47 8.32 -92.71 -0.77 13.70 16 31 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 32 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.32 7.67 -2.39 -0.02 2.31 16 Total: -1.00 -71.42 311.81 1.83 -69.59 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.28 Total: 16.19 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 3.28 Total: -14.58 kcal Atomic # 7 Polarization: -83.78 SS G_CDS: -2.29 Total: -86.07 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.05 Total: -26.45 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.27 Total: -4.85 kcal Total: -71.42 1.83 -69.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320933079.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.782 kcal (2) G-P(sol) polarization free energy of solvation -71.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds