Wall clock time and date at job start Mon Mar 30 2020 01:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.65051 * 359.69426 * 13 11 10 15 15 C 1.54311 * 107.27317 * 180.96765 * 14 13 11 16 16 C 1.55151 * 102.86729 * 22.52642 * 15 14 13 17 17 H 1.09002 * 111.00398 * 82.37381 * 16 15 14 18 18 S 1.81398 * 111.03886 * 206.21228 * 16 15 14 19 19 N 1.65603 * 104.44841 * 173.66674 * 18 16 15 20 20 O 1.42097 * 110.54415 * 285.29326 * 18 16 15 21 21 O 1.42104 * 110.53896 * 62.04245 * 18 16 15 22 22 C 1.47423 * 125.64261 * 179.97438 * 13 11 10 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 27 27 H 1.08993 * 109.88119 * 300.51438 * 14 13 11 28 28 H 1.09000 * 109.88086 * 61.67552 * 14 13 11 29 29 H 1.09006 * 110.92348 * 264.10689 * 15 14 13 30 30 H 1.08997 * 110.74069 * 140.85620 * 15 14 13 31 31 H 0.96996 * 120.00428 * 359.97438 * 19 18 16 32 32 H 0.97002 * 119.99856 * 180.02562 * 19 18 16 33 33 H 1.08998 * 110.37140 * 274.67070 * 22 13 11 34 34 H 1.09004 * 110.37177 * 37.00152 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5582 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 4.0943 -5.7828 -0.0047 15 6 4.6761 -7.2119 -0.0263 16 6 3.5091 -8.0512 -0.6104 17 1 3.4927 -7.9932 -1.6988 18 16 3.6060 -9.7757 -0.0560 19 7 2.2118 -10.4696 -0.6190 20 8 4.6422 -10.4631 -0.7438 21 8 3.4894 -9.8520 1.3582 22 6 2.2771 -7.3393 0.0027 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 3.1566 -3.4355 0.0009 27 1 4.4159 -5.2362 -0.8912 28 1 4.4259 -5.2632 0.8942 29 1 4.9251 -7.5461 0.9809 30 1 5.5503 -7.2630 -0.6753 31 1 1.5747 -9.9389 -1.1222 32 1 2.0319 -11.4068 -0.4448 33 1 2.1059 -7.6871 1.0214 34 1 1.3938 -7.5132 -0.6119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322228129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:29 Heat of formation + Delta-G solvation = -98.646974 kcal Electronic energy + Delta-G solvation = -19597.388851 eV Core-core repulsion = 16271.563368 eV Total energy + Delta-G solvation = -3325.825482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91051 -37.54188 -37.22523 -36.25609 -34.25148 -33.53697 -32.55565 -31.56104 -29.43936 -27.18936 -24.11558 -22.36626 -22.05525 -19.71051 -19.53984 -18.49455 -17.96293 -17.48211 -16.73957 -16.10069 -15.91291 -15.43154 -15.06021 -14.63754 -14.53649 -14.01314 -13.33609 -13.18411 -12.90999 -12.48831 -12.46023 -12.38089 -12.26632 -12.05555 -11.97408 -11.77704 -11.46360 -11.02749 -10.93505 -10.89977 -10.75842 -10.34021 -9.56267 -9.42993 -8.78232 -8.57998 -7.83870 -6.18799 -4.25887 -0.14424 2.44942 2.98079 3.23500 3.23592 3.28806 3.30411 3.56608 3.74232 3.88264 4.28568 4.34779 4.51257 4.77872 4.85065 4.90248 5.17331 5.19206 5.35371 5.46472 5.50144 5.65208 5.67467 6.23466 6.70386 7.06326 7.41926 7.48987 7.51148 7.78909 7.96870 8.68382 8.81330 9.21211 9.41926 10.91383 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.048415 B = 0.003412 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.188431 B = 8204.727952 C = 8580.969775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.723 5.723 11 C 0.712 3.288 12 O -0.594 6.594 13 N -0.641 5.641 14 C 0.108 3.892 15 C -0.106 4.106 16 C -0.610 4.610 17 H 0.153 0.847 18 S 2.629 3.371 19 N -1.250 6.250 20 O -0.962 6.962 21 O -0.955 6.955 22 C 0.150 3.850 23 H 0.267 0.733 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.387 0.613 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.415 0.585 32 H 0.420 0.580 33 H 0.082 0.918 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.067 -18.182 -2.310 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.375 5.375 11 C 0.414 3.586 12 O -0.473 6.473 13 N -0.383 5.383 14 C -0.017 4.017 15 C -0.145 4.145 16 C -0.720 4.720 17 H 0.171 0.829 18 S 2.719 3.281 19 N -0.924 5.924 20 O -0.951 6.951 21 O -0.944 6.944 22 C 0.025 3.975 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.220 0.780 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.120 0.880 31 H 0.242 0.758 32 H 0.250 0.750 33 H 0.100 0.900 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.782 -18.435 -1.731 20.493 hybrid contribution 0.248 1.351 -0.611 1.503 sum 9.030 -17.084 -2.342 19.465 Atomic orbital electron populations 1.69964 1.06108 1.27466 1.48682 1.24939 0.94921 0.99411 0.94673 0.86457 0.79396 0.82246 0.78675 1.20088 1.21047 1.20049 1.21165 0.93216 0.90374 1.53490 0.92002 1.19030 0.87750 0.80936 0.97738 1.45751 1.11013 1.04050 1.76697 1.15669 0.84123 0.80401 0.78444 1.90891 1.13580 1.83727 1.59072 1.47519 1.05443 1.04582 1.80731 1.21870 0.81000 0.96153 1.02647 1.22461 0.95569 0.94365 1.02133 1.31808 1.05537 1.22161 1.12472 0.82937 1.04383 0.73337 0.75702 0.74637 1.53069 1.41347 1.23253 1.74767 1.93619 1.56246 1.69833 1.75371 1.93632 1.85487 1.85266 1.30023 1.21647 0.93794 0.81191 1.00862 0.92343 0.95576 0.95636 0.78010 0.90821 0.90617 0.89093 0.87961 0.75816 0.74995 0.90005 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.62 9.28 -34.44 -0.32 -14.94 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.04 5.43 -5.19 -0.03 7.02 16 10 N -0.72 -15.35 5.51 -66.41 -0.37 -15.71 16 11 C 0.71 14.57 8.49 -86.91 -0.74 13.83 16 12 O -0.59 -14.55 16.60 5.29 0.09 -14.46 16 13 N -0.64 -9.46 3.33 -176.23 -0.59 -10.05 16 14 C 0.11 1.14 6.14 -3.07 -0.02 1.12 16 15 C -0.11 -0.82 6.44 -24.91 -0.16 -0.98 16 16 C -0.61 -4.69 3.69 -24.57 -0.09 -4.78 16 17 H 0.15 0.85 8.14 -51.93 -0.42 0.43 16 18 S 2.63 21.60 5.50 -107.50 -0.59 21.01 16 19 N -1.25 -6.85 9.40 60.35 0.57 -6.29 16 20 O -0.96 -10.86 18.10 -57.54 -1.04 -11.91 16 21 O -0.95 -11.31 17.68 -57.54 -1.02 -12.32 16 22 C 0.15 1.70 6.36 -2.52 -0.02 1.69 16 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.39 7.04 7.31 -40.82 -0.30 6.74 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.42 1.44 8.83 -34.48 -0.30 1.14 16 32 H 0.42 1.83 8.96 -34.47 -0.31 1.52 16 33 H 0.08 0.92 7.66 -51.93 -0.40 0.53 16 34 H 0.09 0.97 8.04 -51.93 -0.42 0.56 16 LS Contribution 305.14 15.07 4.60 4.60 Total: -1.00 -38.55 305.14 -8.32 -46.87 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.21 Total: 3.17 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.47 Total: 4.63 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.35 Total: -57.17 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -1.97 Total: -38.69 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 21.60 SS G_CDS: -0.59 Total: 21.01 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -38.55 -8.32 -46.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.778 kcal (2) G-P(sol) polarization free energy of solvation -38.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds