Wall clock time and date at job start Mon Mar 30 2020 01:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00297 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.47021 * 125.65051 * 359.69426 * 13 11 10 15 15 C 1.54311 * 107.27317 * 180.96765 * 14 13 11 16 16 C 1.55151 * 102.86729 * 22.52642 * 15 14 13 17 17 H 1.09002 * 111.00398 * 82.37381 * 16 15 14 18 18 S 1.81398 * 111.03886 * 206.21228 * 16 15 14 19 19 N 1.65603 * 104.44841 * 173.66674 * 18 16 15 20 20 O 1.42097 * 110.54415 * 285.29326 * 18 16 15 21 21 O 1.42104 * 110.53896 * 62.04245 * 18 16 15 22 22 C 1.47423 * 125.64261 * 179.97438 * 13 11 10 23 23 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 25 25 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 26 26 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 27 27 H 1.08993 * 109.88119 * 300.51438 * 14 13 11 28 28 H 1.09000 * 109.88086 * 61.67552 * 14 13 11 29 29 H 1.09006 * 110.92348 * 264.10689 * 15 14 13 30 30 H 1.08997 * 110.74069 * 140.85620 * 15 14 13 31 31 H 0.96996 * 120.00428 * 359.97438 * 19 18 16 32 32 H 0.97002 * 119.99856 * 180.02562 * 19 18 16 33 33 H 1.08998 * 110.37140 * 274.67070 * 22 13 11 34 34 H 1.09004 * 110.37177 * 37.00152 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5582 -5.1056 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 4.0943 -5.7828 -0.0047 15 6 4.6761 -7.2119 -0.0263 16 6 3.5091 -8.0512 -0.6104 17 1 3.4927 -7.9932 -1.6988 18 16 3.6060 -9.7757 -0.0560 19 7 2.2118 -10.4696 -0.6190 20 8 4.6422 -10.4631 -0.7438 21 8 3.4894 -9.8520 1.3582 22 6 2.2771 -7.3393 0.0027 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 3.1566 -3.4355 0.0009 27 1 4.4159 -5.2362 -0.8912 28 1 4.4259 -5.2632 0.8942 29 1 4.9251 -7.5461 0.9809 30 1 5.5503 -7.2630 -0.6753 31 1 1.5747 -9.9389 -1.1222 32 1 2.0319 -11.4068 -0.4448 33 1 2.1059 -7.6871 1.0214 34 1 1.3938 -7.5132 -0.6119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322228129.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:28 Heat of formation + Delta-G solvation = -133.182628 kcal Electronic energy + Delta-G solvation = -19598.886429 eV Core-core repulsion = 16271.563368 eV Total energy + Delta-G solvation = -3327.323060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 277.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.25712 -38.75393 -38.08472 -37.05523 -36.17045 -34.45397 -34.05894 -32.80242 -30.31853 -29.11074 -25.55264 -23.97303 -22.96222 -21.09937 -20.35584 -19.75962 -18.78084 -18.23630 -18.00255 -17.52926 -17.01497 -16.77658 -16.46031 -16.16904 -15.60677 -14.99932 -14.75612 -14.50433 -14.24357 -13.93996 -13.71633 -13.29594 -13.21851 -13.15644 -13.08459 -12.92399 -12.77149 -12.67079 -12.23921 -12.15392 -11.68191 -11.50349 -11.30133 -11.27682 -10.79478 -10.10119 -9.48540 -8.28277 -6.44994 -0.83750 1.43895 1.48511 1.55745 1.62772 1.89836 2.14682 2.38911 2.55098 2.83380 3.06830 3.11738 3.33754 3.64449 3.88351 4.11755 4.15194 4.43195 4.58235 4.66618 4.74345 4.93728 5.01901 5.23754 5.25959 5.28196 5.47240 5.68165 5.83787 6.12876 6.34111 6.65929 7.11602 7.24980 7.63281 8.83832 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.048415 B = 0.003412 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.188431 B = 8204.727952 C = 8580.969775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.285 3.715 10 N -0.719 5.719 11 C 0.708 3.292 12 O -0.644 6.644 13 N -0.636 5.636 14 C 0.095 3.905 15 C -0.107 4.107 16 C -0.591 4.591 17 H 0.182 0.818 18 S 2.656 3.344 19 N -1.241 6.241 20 O -0.988 6.988 21 O -0.993 6.993 22 C 0.135 3.865 23 H 0.269 0.731 24 H -0.014 1.014 25 H -0.012 1.012 26 H 0.404 0.596 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.426 0.574 32 H 0.427 0.573 33 H 0.081 0.919 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.607 -18.322 -3.012 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.809 3.191 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.162 3.838 10 N -0.372 5.372 11 C 0.409 3.591 12 O -0.526 6.526 13 N -0.375 5.375 14 C -0.028 4.028 15 C -0.146 4.146 16 C -0.701 4.701 17 H 0.199 0.801 18 S 2.747 3.253 19 N -0.920 5.920 20 O -0.977 6.977 21 O -0.982 6.982 22 C 0.011 3.989 23 H 0.078 0.922 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.239 0.761 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.154 0.846 31 H 0.255 0.745 32 H 0.259 0.741 33 H 0.099 0.901 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.400 -18.654 -2.432 21.997 hybrid contribution -0.570 1.292 -0.398 1.467 sum 10.831 -17.362 -2.830 20.658 Atomic orbital electron populations 1.70132 1.08276 1.28676 1.49782 1.26050 0.95766 1.03830 0.93797 0.85194 0.77891 0.76535 0.79495 1.18584 1.21136 1.18706 1.21552 0.94284 0.90425 1.53178 0.89858 1.18442 0.88065 0.83191 0.94091 1.45313 1.10985 1.03583 1.77364 1.15792 0.84162 0.81001 0.78120 1.90847 1.16134 1.84588 1.61049 1.47440 1.06842 1.04620 1.78635 1.22241 0.78185 0.98647 1.03726 1.22629 0.96336 0.92017 1.03635 1.31697 1.03642 1.20728 1.14054 0.80065 1.03396 0.73097 0.75384 0.73438 1.52800 1.40784 1.23797 1.74581 1.93593 1.57851 1.70656 1.75649 1.93592 1.86102 1.85907 1.32578 1.21917 0.95928 0.79516 1.01566 0.92200 0.99617 0.99408 0.76050 0.89394 0.89993 0.88357 0.84552 0.74489 0.74120 0.90123 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 2 C 0.01 0.29 5.46 84.66 0.46 0.76 16 3 Si 0.99 41.69 29.54 68.60 2.03 43.71 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 7 C -0.56 -30.01 9.28 25.60 0.24 -29.77 16 8 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.29 15.71 5.43 85.63 0.46 16.17 16 10 N -0.72 -30.89 5.51 -482.28 -2.66 -33.55 16 11 C 0.71 29.38 8.49 179.05 1.52 30.90 16 12 O -0.64 -32.79 16.60 -4.00 -0.07 -32.85 16 13 N -0.64 -18.08 3.33 -829.72 -2.76 -20.84 16 14 C 0.09 1.76 6.14 86.72 0.53 2.30 16 15 C -0.11 -1.29 6.44 31.78 0.20 -1.08 16 16 C -0.59 -7.39 3.69 31.99 0.12 -7.27 16 17 H 0.18 1.28 8.14 -2.39 -0.02 1.26 16 18 S 2.66 38.37 5.50 -56.49 -0.31 38.06 16 19 N -1.24 -11.29 9.40 37.02 0.35 -10.94 16 20 O -0.99 -20.21 18.10 -127.65 -2.31 -22.52 16 21 O -0.99 -22.33 17.68 -127.65 -2.26 -24.59 16 22 C 0.14 2.87 6.36 86.87 0.55 3.42 16 23 H 0.27 15.07 8.31 -92.71 -0.77 14.29 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.40 14.33 7.31 -92.71 -0.68 13.66 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.08 8.03 -2.38 -0.02 1.07 16 30 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.43 2.09 8.83 -96.75 -0.85 1.24 16 32 H 0.43 3.00 8.96 -96.74 -0.87 2.14 16 33 H 0.08 1.76 7.66 -2.39 -0.02 1.74 16 34 H 0.10 1.95 8.04 -2.39 -0.02 1.94 16 Total: -1.00 -86.21 305.14 -4.85 -91.07 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -1.24 Total: 12.47 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 4.09 Total: 15.42 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -4.78 Total: -120.76 kcal Atomic # 8 Polarization: -75.33 SS G_CDS: -4.63 Total: -79.96 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 38.37 SS G_CDS: -0.31 Total: 38.06 kcal Total: -86.21 -4.85 -91.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322228129.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.114 kcal (2) G-P(sol) polarization free energy of solvation -86.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds