Wall clock time and date at job start Mon Mar 30 2020 02:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.20829 * 119.99769 * 120.00068 * 12 2 1 14 14 O 1.34227 * 119.99922 * 300.00449 * 12 2 1 15 15 C 1.45207 * 116.99705 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.46729 * 180.02562 * 15 14 12 17 17 C 1.38452 * 119.82348 * 269.72168 * 16 15 14 18 18 C 1.37871 * 120.21342 * 179.72477 * 17 16 15 19 19 C 1.39685 * 119.87317 * 0.55363 * 18 17 16 20 20 C 1.43202 * 120.16795 * 179.70104 * 19 18 17 21 21 N 9.69308 * 81.65932 * 77.94849 * 2 1 3 22 22 C 1.39867 * 119.65956 * 359.72539 * 19 18 17 23 23 F 1.35098 * 120.10732 * 179.97438 * 22 19 18 24 24 C 1.38228 * 119.82859 * 90.00061 * 16 15 14 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46889 * 300.00115 * 15 14 12 30 30 H 1.09005 * 109.46712 * 59.99637 * 15 14 12 31 31 H 1.07998 * 119.89365 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.06194 * 180.24960 * 18 17 16 33 33 H 1.07998 * 119.93544 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2267 -0.9862 3.5898 16 6 1.7616 -0.3297 4.8640 17 6 2.5327 0.6598 5.4499 18 6 2.1122 1.2698 6.6126 19 6 0.9099 0.8800 7.2073 20 6 0.4703 1.5049 8.4184 21 7 0.1239 2.0024 9.3792 22 6 0.1379 -0.1242 6.6140 23 9 -1.0261 -0.5086 7.1817 24 6 0.5704 -0.7224 5.4448 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9028 -0.5285 -4.4375 29 1 1.8625 -2.0131 3.5566 30 1 3.3162 -0.9859 3.5570 31 1 3.4643 0.9581 4.9921 32 1 2.7137 2.0442 7.0654 33 1 -0.0238 -1.4978 4.9843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327175305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:43 Heat of formation + Delta-G solvation = -73.663661 kcal Electronic energy + Delta-G solvation = -19952.633941 eV Core-core repulsion = 16472.527903 eV Total energy + Delta-G solvation = -3480.106037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.41128 -40.20013 -39.43135 -36.96556 -35.96636 -34.06669 -32.70533 -31.37346 -31.16382 -27.61721 -25.25318 -23.82270 -23.36610 -22.42146 -19.94623 -19.60133 -17.54880 -17.25040 -17.07118 -16.38227 -16.13425 -15.90830 -15.71564 -15.00470 -14.61878 -14.37557 -14.10798 -13.93845 -13.49157 -13.44171 -13.08775 -12.85530 -12.49800 -12.46078 -12.31616 -12.03516 -11.71982 -11.52952 -11.11469 -10.75210 -10.46462 -10.34519 -9.75449 -9.63189 -9.35780 -9.24236 -9.14522 -8.70001 -6.17970 -4.21329 0.07925 0.68419 2.22265 2.35523 3.01798 3.10009 3.18571 3.26893 3.31290 3.32976 3.49379 3.63668 4.18752 4.27869 4.32711 4.66950 4.72819 5.06378 5.12027 5.13296 5.33075 5.38515 5.52865 5.61550 5.72803 5.98118 6.08316 6.22401 6.24139 6.33412 6.62654 6.92880 7.02805 7.04170 7.40578 8.32397 8.58594 8.96802 9.38521 10.94227 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.003491 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.798925 B = 8017.877815 C = 8261.719912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.027 3.973 3 H 0.065 0.935 4 C -0.521 4.521 5 H 0.095 0.905 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.293 1.293 12 C 0.474 3.526 13 O -0.499 6.499 14 O -0.361 6.361 15 C 0.095 3.905 16 C -0.025 4.025 17 C -0.107 4.107 18 C -0.043 4.043 19 C -0.060 4.060 20 C 0.254 3.746 21 N -0.405 5.405 22 C 0.145 3.855 23 F -0.126 7.126 24 C -0.131 4.131 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.267 0.733 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 3.320 18.529 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.083 0.917 4 C -0.558 4.558 5 H 0.113 0.887 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.189 1.189 11 H -0.221 1.221 12 C 0.318 3.682 13 O -0.384 6.384 14 O -0.280 6.280 15 C 0.021 3.979 16 C -0.026 4.026 17 C -0.125 4.125 18 C -0.064 4.064 19 C -0.065 4.065 20 C -0.061 4.061 21 N -0.080 5.080 22 C 0.123 3.877 23 F -0.105 7.105 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -1.670 3.743 19.828 20.247 hybrid contribution -0.659 0.368 -0.472 0.891 sum -2.330 4.112 19.356 19.924 Atomic orbital electron populations 1.22104 0.96359 1.01801 1.00146 1.19157 0.93969 0.97688 0.88449 0.91743 1.20906 1.33179 1.14631 0.87099 0.88726 1.24916 0.95603 0.96628 0.95544 1.69863 1.44849 1.40012 0.97999 0.86929 0.80778 0.83626 0.77440 1.20212 1.18898 1.22060 1.24615 0.77043 0.83259 0.83325 1.90568 1.35418 1.25985 1.86387 1.86662 1.70586 1.55744 1.14977 1.21718 0.99683 0.95214 0.81314 1.19731 0.93228 0.94994 0.94676 1.21169 1.01068 0.95183 0.95054 1.21088 0.92804 0.98138 0.94347 1.16024 0.98056 0.99796 0.92597 1.25337 0.94065 0.93896 0.92812 1.81254 1.07280 1.08571 1.10920 1.17546 0.82540 0.94749 0.92831 1.91563 1.45124 1.89734 1.84037 1.21073 0.97295 1.02197 0.94370 0.92952 0.92328 0.93620 0.92258 0.89930 0.89702 0.83574 0.83576 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.61 37.16 0.32 -2.59 16 2 C 0.03 0.60 2.33 -92.92 -0.22 0.38 16 3 H 0.06 1.39 7.20 -51.93 -0.37 1.01 16 4 C -0.52 -14.23 8.96 -34.44 -0.31 -14.54 16 5 H 0.09 2.92 7.00 -52.49 -0.37 2.56 16 6 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 8 Si 0.88 20.34 24.37 -169.99 -4.14 16.19 16 9 H -0.28 -6.14 6.87 56.52 0.39 -5.76 16 10 H -0.26 -5.66 6.53 56.52 0.37 -5.29 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.47 9.64 7.25 36.01 0.26 9.90 16 13 O -0.50 -11.46 15.21 -18.75 -0.29 -11.74 16 14 O -0.36 -5.75 10.11 -39.25 -0.40 -6.14 16 15 C 0.09 1.11 5.58 36.00 0.20 1.31 16 16 C -0.03 -0.23 5.52 -104.55 -0.58 -0.81 16 17 C -0.11 -0.77 9.67 -39.64 -0.38 -1.15 16 18 C -0.04 -0.28 9.76 -39.18 -0.38 -0.67 16 19 C -0.06 -0.51 5.74 -106.82 -0.61 -1.13 16 20 C 0.25 2.64 14.98 -22.47 -0.34 2.30 16 21 N -0.41 -5.06 18.54 41.84 0.78 -4.28 16 22 C 0.15 1.33 7.28 -38.96 -0.28 1.05 16 23 F -0.13 -1.31 16.81 2.25 0.04 -1.27 16 24 C -0.13 -1.14 9.66 -39.57 -0.38 -1.52 16 25 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.76 8.11 -51.93 -0.42 0.34 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 30 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -31.80 302.64 -4.52 -36.32 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -3.04 Total: -2.56 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -2.80 Total: -5.48 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 1.55 Total: -29.87 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.68 Total: -17.88 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.14 Total: 16.19 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.80 -4.52 -36.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327175305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.346 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds