Wall clock time and date at job start Mon Mar 30 2020 02:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.20829 * 119.99769 * 120.00068 * 12 2 1 14 14 O 1.34227 * 119.99922 * 300.00449 * 12 2 1 15 15 C 1.45207 * 116.99705 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.46729 * 180.02562 * 15 14 12 17 17 C 1.38452 * 119.82348 * 269.72168 * 16 15 14 18 18 C 1.37871 * 120.21342 * 179.72477 * 17 16 15 19 19 C 1.39685 * 119.87317 * 0.55363 * 18 17 16 20 20 C 1.43202 * 120.16795 * 179.70104 * 19 18 17 21 21 N 9.69308 * 81.65932 * 77.94849 * 2 1 3 22 22 C 1.39867 * 119.65956 * 359.72539 * 19 18 17 23 23 F 1.35098 * 120.10732 * 179.97438 * 22 19 18 24 24 C 1.38228 * 119.82859 * 90.00061 * 16 15 14 25 25 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46889 * 300.00115 * 15 14 12 30 30 H 1.09005 * 109.46712 * 59.99637 * 15 14 12 31 31 H 1.07998 * 119.89365 * 0.02562 * 17 16 15 32 32 H 1.08002 * 120.06194 * 180.24960 * 18 17 16 33 33 H 1.07998 * 119.93544 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2267 -0.9862 3.5898 16 6 1.7616 -0.3297 4.8640 17 6 2.5327 0.6598 5.4499 18 6 2.1122 1.2698 6.6126 19 6 0.9099 0.8800 7.2073 20 6 0.4703 1.5049 8.4184 21 7 0.1239 2.0024 9.3792 22 6 0.1379 -0.1242 6.6140 23 9 -1.0261 -0.5086 7.1817 24 6 0.5704 -0.7224 5.4448 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.9028 -0.5285 -4.4375 29 1 1.8625 -2.0131 3.5566 30 1 3.3162 -0.9859 3.5570 31 1 3.4643 0.9581 4.9921 32 1 2.7137 2.0442 7.0654 33 1 -0.0238 -1.4978 4.9843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327175305.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:43 Heat of formation + Delta-G solvation = -92.615749 kcal Electronic energy + Delta-G solvation = -19953.455765 eV Core-core repulsion = 16472.527903 eV Total energy + Delta-G solvation = -3480.927861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.15069 -41.46947 -40.34758 -37.92013 -37.28689 -35.91223 -33.67599 -33.16579 -31.80729 -28.55203 -27.13203 -25.30059 -24.00968 -23.39462 -21.52822 -20.30207 -18.95999 -18.39121 -18.04686 -17.92305 -17.35967 -16.96284 -16.90714 -16.30604 -15.70123 -15.20462 -15.04322 -14.93626 -14.76500 -14.49838 -14.29022 -14.08149 -13.93017 -13.66748 -13.42907 -13.11528 -12.85868 -12.77244 -12.56289 -12.32885 -12.17012 -11.61905 -11.47230 -11.23404 -11.06569 -10.74310 -10.17953 -9.88018 -8.28232 -6.38157 -0.63099 0.07666 1.37322 1.42395 1.43904 1.44899 1.51415 1.54860 2.06093 2.35246 2.58997 2.66065 2.92647 3.05739 3.44844 3.63394 4.04108 4.05285 4.17934 4.23677 4.42787 4.46783 4.56416 4.60831 4.76719 4.82835 4.91272 5.02587 5.03280 5.32444 5.38704 5.43550 5.52410 5.60006 6.24772 6.25471 6.74887 7.02970 7.27308 8.88418 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.031145 B = 0.003491 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.798925 B = 8017.877815 C = 8261.719912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.018 3.982 3 H 0.082 0.918 4 C -0.531 4.531 5 H 0.039 0.961 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.952 3.048 9 H -0.260 1.260 10 H -0.230 1.230 11 H -0.299 1.299 12 C 0.483 3.517 13 O -0.537 6.537 14 O -0.350 6.350 15 C 0.090 3.910 16 C -0.033 4.033 17 C -0.097 4.097 18 C -0.026 4.026 19 C -0.062 4.062 20 C 0.274 3.726 21 N -0.447 5.447 22 C 0.135 3.865 23 F -0.137 7.137 24 C -0.129 4.129 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.269 0.731 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.169 0.831 32 H 0.177 0.823 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 5.579 20.122 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.001 4.001 3 H 0.099 0.901 4 C -0.568 4.568 5 H 0.057 0.943 6 C -0.182 4.182 7 N -0.586 5.586 8 Si 0.777 3.223 9 H -0.186 1.186 10 H -0.153 1.153 11 H -0.227 1.227 12 C 0.328 3.672 13 O -0.425 6.425 14 O -0.267 6.267 15 C 0.016 3.984 16 C -0.034 4.034 17 C -0.114 4.114 18 C -0.046 4.046 19 C -0.066 4.066 20 C -0.041 4.041 21 N -0.122 5.122 22 C 0.113 3.887 23 F -0.116 7.116 24 C -0.148 4.148 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.186 0.814 32 H 0.194 0.806 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.382 6.012 21.477 22.430 hybrid contribution -0.345 -0.432 -0.875 1.035 sum -2.727 5.580 20.602 21.518 Atomic orbital electron populations 1.22020 0.93914 1.02086 1.01848 1.19078 0.95854 0.97764 0.87408 0.90071 1.21054 1.32468 1.13390 0.89916 0.94252 1.25902 0.97136 1.00433 0.94761 1.70042 1.47129 1.42575 0.98824 0.85815 0.78980 0.79287 0.78252 1.18595 1.15263 1.22650 1.24120 0.76259 0.82365 0.84459 1.90564 1.37130 1.27600 1.87229 1.86581 1.70065 1.55598 1.14462 1.22022 1.00392 0.95359 0.80586 1.19551 0.93927 0.96113 0.93771 1.21419 1.01343 0.93878 0.94802 1.21375 0.91802 0.97930 0.93525 1.16149 0.98784 0.99681 0.92002 1.25556 0.92974 0.92930 0.92614 1.81276 1.08609 1.10094 1.12262 1.17619 0.82499 0.95356 0.93206 1.91539 1.45834 1.89960 1.84251 1.21100 0.97277 1.02208 0.94184 0.93287 0.92964 0.89635 0.92159 0.89782 0.88738 0.81387 0.80559 0.82531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 8.61 71.98 0.62 -4.55 16 2 C 0.02 0.79 2.33 -12.28 -0.03 0.76 16 3 H 0.08 3.24 7.20 -2.38 -0.02 3.22 16 4 C -0.53 -29.67 8.96 25.60 0.23 -29.44 16 5 H 0.04 2.57 7.00 -2.91 -0.02 2.55 16 6 C 0.02 0.86 5.45 84.66 0.46 1.32 16 7 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 8 Si 0.95 40.82 24.37 68.60 1.67 42.49 16 9 H -0.26 -10.49 6.87 99.48 0.68 -9.80 16 10 H -0.23 -8.52 6.53 99.48 0.65 -7.87 16 11 H -0.30 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.48 19.14 7.25 71.24 0.52 19.66 16 13 O -0.54 -25.06 15.21 21.95 0.33 -24.72 16 14 O -0.35 -10.22 10.11 -51.39 -0.52 -10.74 16 15 C 0.09 1.90 5.58 71.24 0.40 2.30 16 16 C -0.03 -0.49 5.52 -19.82 -0.11 -0.60 16 17 C -0.10 -1.00 9.67 22.23 0.22 -0.79 16 18 C -0.03 -0.24 9.76 22.53 0.22 -0.02 16 19 C -0.06 -0.88 5.74 -21.29 -0.12 -1.01 16 20 C 0.27 5.17 14.98 88.33 1.32 6.49 16 21 N -0.45 -10.65 18.54 19.00 0.35 -10.30 16 22 C 0.14 2.19 7.28 22.67 0.17 2.36 16 23 F -0.14 -2.69 16.81 44.97 0.76 -1.94 16 24 C -0.13 -1.95 9.66 22.28 0.22 -1.74 16 25 H 0.05 1.82 3.27 -2.39 -0.01 1.82 16 26 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.44 8.11 -2.39 -0.02 2.43 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.08 1.78 8.07 -2.39 -0.02 1.76 16 30 H 0.09 1.86 8.07 -2.38 -0.02 1.84 16 31 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.18 0.59 8.06 -2.91 -0.02 0.56 16 33 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -72.42 302.64 8.07 -64.35 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.08 Total: 3.82 kcal Atomic # 6 Polarization: -9.37 SS G_CDS: 4.10 Total: -5.27 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: 0.65 Total: -68.00 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.19 Total: -35.46 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.76 Total: -1.94 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.67 Total: 42.49 kcal Total: -72.42 8.07 -64.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327175305.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.268 kcal (2) G-P(sol) polarization free energy of solvation -72.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds