Wall clock time and date at job start Mon Mar 30 2020 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47387 * 2 1 4 4 C 1.50701 * 109.47605 * 239.99827 * 2 1 3 5 5 H 1.07996 * 119.99859 * 240.00551 * 4 2 1 6 6 C 1.37876 * 119.99782 * 59.99699 * 4 2 1 7 7 N 1.31519 * 119.99785 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47438 * 60.00325 * 8 6 4 10 10 H 1.48502 * 109.47077 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47219 * 299.99863 * 8 6 4 12 12 C 1.50707 * 109.47008 * 119.99498 * 2 1 3 13 13 O 1.20834 * 119.99520 * 119.99673 * 12 2 1 14 14 O 1.34227 * 120.00297 * 300.00683 * 12 2 1 15 15 C 1.45199 * 116.99861 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.46825 * 179.97438 * 15 14 12 17 17 C 1.38348 * 119.86177 * 0.02562 * 16 15 14 18 18 C 1.37933 * 120.17832 * 180.23498 * 17 16 15 19 19 C 1.39658 * 119.89833 * 359.49111 * 18 17 16 20 20 C 1.43203 * 120.13633 * 180.23625 * 19 18 17 21 21 N 9.69125 * 81.59903 * 77.95563 * 2 1 3 22 22 C 1.39583 * 119.72107 * 0.50599 * 19 18 17 23 23 C 1.38201 * 119.82136 * 359.74555 * 22 19 18 24 24 F 1.35103 * 119.94782 * 179.97438 * 23 22 19 25 25 H 1.09005 * 109.47202 * 300.00366 * 1 2 3 26 26 H 1.08999 * 109.46892 * 59.99962 * 1 2 3 27 27 H 1.09002 * 109.47387 * 179.97438 * 1 2 3 28 28 H 0.97007 * 119.99875 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47345 * 59.99930 * 15 14 12 30 30 H 1.08998 * 109.47071 * 299.99203 * 15 14 12 31 31 H 1.08002 * 119.90669 * 359.95058 * 17 16 15 32 32 H 1.08000 * 120.04844 * 179.74126 * 18 17 16 33 33 H 1.08004 * 120.08839 * 179.77391 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3215 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0077 10 1 1.8271 -0.4200 -5.2203 11 1 3.8065 -1.1208 -4.0080 12 6 2.0323 -0.7103 1.2306 13 8 2.7269 -1.6928 1.1197 14 8 1.7079 -0.2518 2.4497 15 6 2.2266 -0.9863 3.5897 16 6 1.7626 -0.3290 4.8640 17 6 0.9649 0.7998 4.8059 18 6 0.5405 1.4095 5.9681 19 6 0.9084 0.8794 7.2067 20 6 0.4664 1.5053 8.4165 21 7 0.1141 2.0006 9.3762 22 6 1.7134 -0.2596 7.2605 23 6 2.1364 -0.8582 6.0888 24 9 2.9160 -1.9605 6.1378 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7095 1.1617 -3.4844 29 1 3.3161 -0.9859 3.5570 30 1 1.8624 -2.0131 3.5567 31 1 0.6775 1.2074 3.8479 32 1 -0.0788 2.2930 5.9203 33 1 2.0045 -0.6724 8.2151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327504025.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:50 Heat of formation + Delta-G solvation = -84.103733 kcal Electronic energy + Delta-G solvation = -20006.477742 eV Core-core repulsion = 16525.918990 eV Total energy + Delta-G solvation = -3480.558753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.22003 -40.05809 -39.35256 -36.87108 -35.88644 -33.96611 -32.58937 -31.07626 -30.64419 -27.43620 -25.26962 -23.81295 -23.01333 -22.33421 -19.96531 -19.49510 -17.18492 -16.65978 -16.56330 -16.35714 -16.23767 -15.80326 -15.60089 -15.18184 -14.36477 -14.23749 -14.14734 -13.87925 -13.47948 -13.29876 -12.99524 -12.72804 -12.48455 -12.13256 -11.78777 -11.62270 -11.51412 -11.09190 -10.87807 -10.76445 -10.49817 -10.34338 -10.11439 -9.34434 -9.25709 -9.12976 -9.00740 -8.50353 -6.16468 -4.22241 0.23779 0.77746 2.27531 2.49132 3.13695 3.18243 3.29455 3.32531 3.35167 3.38314 3.39447 3.97649 4.33851 4.41322 4.43842 4.58872 4.85048 5.17133 5.23187 5.32575 5.40222 5.49535 5.61448 5.81866 5.89443 6.12294 6.36632 6.58309 6.76598 6.79342 7.05694 7.09189 7.35389 7.67647 7.87509 8.06874 8.71311 8.86283 9.43861 10.90809 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.035204 B = 0.003440 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.164282 B = 8138.358604 C = 8839.058697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 H 0.066 0.934 4 C -0.516 4.516 5 H 0.075 0.925 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.467 3.533 13 O -0.513 6.513 14 O -0.363 6.363 15 C 0.098 3.902 16 C -0.085 4.085 17 C -0.068 4.068 18 C -0.076 4.076 19 C -0.008 4.008 20 C 0.258 3.742 21 N -0.413 5.413 22 C -0.106 4.106 23 C 0.104 3.896 24 F -0.129 7.129 25 H 0.024 0.976 26 H 0.096 0.904 27 H 0.032 0.968 28 H 0.265 0.735 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.681 0.483 15.641 15.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 H 0.083 0.917 4 C -0.554 4.554 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.399 6.399 14 O -0.282 6.282 15 C 0.024 3.976 16 C -0.087 4.087 17 C -0.086 4.086 18 C -0.097 4.097 19 C -0.011 4.011 20 C -0.057 4.057 21 N -0.087 5.087 22 C -0.127 4.127 23 C 0.085 3.915 24 F -0.107 7.107 25 H 0.043 0.957 26 H 0.115 0.885 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.059 1.012 16.983 17.046 hybrid contribution 0.717 -1.004 -1.054 1.622 sum -0.342 0.008 15.929 15.932 Atomic orbital electron populations 1.21750 0.95504 1.00153 1.01802 1.18779 0.94885 0.96995 0.85249 0.91657 1.21088 1.32146 1.13357 0.88762 0.90664 1.24924 0.94829 0.94989 0.99136 1.69862 1.36372 1.22715 1.24070 0.86428 0.79320 0.79687 0.81287 1.20059 1.21195 1.20059 1.25446 0.76580 0.83310 0.83492 1.90526 1.36168 1.26628 1.86546 1.86559 1.70610 1.55688 1.15303 1.21453 0.99377 0.95150 0.81608 1.20078 0.98601 0.97036 0.92961 1.21059 0.94574 0.93235 0.99758 1.21329 0.98533 0.99769 0.90059 1.15681 1.01522 0.96130 0.87778 1.25517 0.93754 0.93656 0.92803 1.81276 1.08491 1.08496 1.10483 1.20975 0.98249 0.95366 0.98129 1.17057 0.95265 0.86271 0.92920 1.91553 1.71922 1.50079 1.97184 0.95718 0.88509 0.94917 0.92567 0.89472 0.89477 0.82181 0.83893 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.90 37.16 0.33 -2.61 16 2 C 0.06 1.42 2.74 -92.92 -0.25 1.16 16 3 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 4 C -0.52 -13.85 8.37 -34.44 -0.29 -14.14 16 5 H 0.08 2.11 6.76 -52.49 -0.35 1.76 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.47 10.05 7.25 36.01 0.26 10.31 16 13 O -0.51 -12.24 15.21 -18.76 -0.29 -12.53 16 14 O -0.36 -6.20 8.58 -39.25 -0.34 -6.54 16 15 C 0.10 1.37 5.42 36.01 0.20 1.57 16 16 C -0.09 -0.94 5.89 -104.46 -0.62 -1.55 16 17 C -0.07 -0.66 9.36 -39.65 -0.37 -1.03 16 18 C -0.08 -0.60 9.75 -39.16 -0.38 -0.98 16 19 C -0.01 -0.06 5.73 -106.94 -0.61 -0.68 16 20 C 0.26 2.45 15.33 -22.47 -0.34 2.11 16 21 N -0.41 -4.85 18.54 41.84 0.78 -4.07 16 22 C -0.11 -0.86 9.73 -39.09 -0.38 -1.24 16 23 C 0.10 1.03 7.24 -39.48 -0.29 0.75 16 24 F -0.13 -1.41 16.79 2.25 0.04 -1.37 16 25 H 0.02 0.45 8.11 -51.93 -0.42 0.03 16 26 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 31 H 0.16 1.60 6.97 -52.49 -0.37 1.23 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -29.04 307.20 -5.54 -34.58 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -3.13 Total: -2.52 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.84 Total: -4.75 kcal Atomic # 7 Polarization: -28.73 SS G_CDS: 1.40 Total: -27.32 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.62 Total: -19.06 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.04 -5.54 -34.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327504025.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.524 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds