Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46510 * 109.46807 * 2 1 4 4 C 1.36798 * 119.99759 * 267.37819 * 3 2 1 5 5 H 1.08002 * 119.99772 * 139.68032 * 4 3 2 6 6 C 1.39085 * 120.00631 * 319.68295 * 4 3 2 7 7 N 1.31335 * 120.00216 * 164.67467 * 6 4 3 8 8 Si 1.86801 * 119.99821 * 344.67557 * 6 4 3 9 9 H 1.48501 * 109.47179 * 90.82128 * 8 6 4 10 10 H 1.48494 * 109.47379 * 210.82001 * 8 6 4 11 11 H 1.48501 * 109.46903 * 330.82073 * 8 6 4 12 12 C 1.34772 * 119.99701 * 87.38489 * 3 2 1 13 13 O 1.21589 * 119.99671 * 174.26329 * 12 3 2 14 14 C 1.47888 * 120.00459 * 354.53958 * 12 3 2 15 15 C 1.39621 * 119.48037 * 174.46858 * 14 12 3 16 16 C 1.38425 * 119.39244 * 179.97438 * 15 14 12 17 17 C 1.38695 * 118.37384 * 359.97438 * 16 15 14 18 18 O 1.35048 * 134.02475 * 180.02562 * 17 16 15 19 19 C 1.34374 * 108.12898 * 179.97438 * 18 17 16 20 20 O 1.35087 * 124.89113 * 180.02562 * 19 18 17 21 21 N 1.30717 * 110.22102 * 0.02562 * 19 18 17 22 22 C 1.36024 * 108.82687 * 359.97438 * 21 19 18 23 23 N 1.32542 * 133.37240 * 180.32222 * 22 21 19 24 24 H 1.09000 * 109.47616 * 59.99975 * 1 2 3 25 25 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47459 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.47255 * 240.00316 * 2 1 3 28 28 H 1.08997 * 109.47321 * 119.99595 * 2 1 3 29 29 H 0.96999 * 119.99663 * 180.02562 * 7 6 4 30 30 H 1.08001 * 120.30738 * 359.97132 * 15 14 12 31 31 H 1.07999 * 120.81122 * 180.02562 * 16 15 14 32 32 H 0.96701 * 113.99973 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2973 2.0081 -1.1835 5 1 2.0279 3.0448 -1.3222 6 6 2.9279 1.3105 -2.2083 7 7 2.9290 1.7952 -3.4289 8 14 3.7732 -0.3160 -1.8484 9 1 2.8093 -1.4287 -2.0436 10 1 4.9239 -0.4905 -2.7707 11 1 4.2584 -0.3218 -0.4449 12 6 2.1926 2.0344 1.1660 13 8 2.6953 3.1414 1.1734 14 6 1.7781 1.4020 2.4369 15 6 2.0684 2.0359 3.6466 16 6 1.6791 1.4427 4.8351 17 6 1.0087 0.2299 4.7778 18 8 0.4978 -0.6050 5.7082 19 6 -0.0524 -1.6532 5.0725 20 8 -0.6618 -2.6935 5.6818 21 7 0.0869 -1.5213 3.7795 22 6 0.7455 -0.3586 3.5253 23 7 1.1310 0.2440 2.4095 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3684 1.3084 -4.1436 30 1 2.5920 2.9805 3.6549 31 1 1.8915 1.9131 5.7838 32 1 -1.0019 -3.3623 5.0718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327862023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = 29.430080 kcal Electronic energy + Delta-G solvation = -21507.238059 eV Core-core repulsion = 18051.522463 eV Total energy + Delta-G solvation = -3455.715596 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.50204 -39.90307 -38.56560 -37.66731 -35.39187 -34.68179 -32.69839 -31.87357 -29.77268 -29.58501 -25.99881 -24.33296 -23.41780 -22.79897 -22.42929 -20.32328 -19.43135 -18.28023 -17.55139 -17.52860 -16.98446 -16.40894 -15.78399 -15.10028 -14.67131 -14.23531 -14.07210 -13.93563 -13.68010 -13.22526 -13.19582 -12.77722 -12.57161 -12.29570 -11.89872 -11.41353 -11.21390 -11.11838 -10.93215 -10.68817 -10.11527 -9.89172 -9.39312 -9.25203 -9.08612 -8.59319 -8.55797 -7.78141 -6.50927 -4.06495 0.58732 0.73117 1.29622 2.17109 2.98453 3.03018 3.17595 3.25392 3.33557 4.02646 4.07826 4.16995 4.23844 4.36801 4.82886 4.89981 5.11076 5.16501 5.25279 5.51699 5.77955 5.89770 5.96232 6.22230 6.23941 6.33783 6.53842 6.66406 6.81656 7.05971 7.28450 7.44487 7.79992 8.17593 8.41783 8.82306 9.17034 9.66560 10.58810 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026005 B = 0.005869 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.471967 B = 4769.817589 C = 5404.397413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.085 3.915 3 N -0.424 5.424 4 C -0.303 4.303 5 H 0.110 0.890 6 C 0.062 3.938 7 N -0.852 5.852 8 Si 0.890 3.110 9 H -0.269 1.269 10 H -0.287 1.287 11 H -0.263 1.263 12 C 0.491 3.509 13 O -0.562 6.562 14 C 0.136 3.864 15 C -0.109 4.109 16 C -0.040 4.040 17 C -0.058 4.058 18 O -0.199 6.199 19 C 0.463 3.537 20 O -0.413 6.413 21 N -0.508 5.508 22 C 0.252 3.748 23 N -0.414 5.414 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.278 0.722 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.295 -8.574 15.816 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 N -0.142 5.142 4 C -0.431 4.431 5 H 0.128 0.872 6 C -0.146 4.146 7 N -0.487 5.487 8 Si 0.717 3.283 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.187 1.187 12 C 0.279 3.721 13 O -0.445 6.445 14 C -0.010 4.010 15 C -0.130 4.130 16 C -0.066 4.066 17 C -0.110 4.110 18 O -0.092 6.092 19 C 0.211 3.789 20 O -0.215 6.215 21 N -0.260 5.260 22 C 0.013 3.987 23 N -0.131 5.131 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.184 0.816 31 H 0.168 0.832 32 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -5.315 -8.664 14.987 18.109 hybrid contribution 0.467 -0.706 1.061 1.357 sum -4.848 -9.370 16.048 19.205 Atomic orbital electron populations 1.21850 0.95648 1.00709 1.01401 1.22197 0.95621 0.84441 1.01495 1.43792 1.53158 1.12098 1.05155 1.19207 1.37394 0.99418 0.87124 0.87222 1.25468 0.95553 0.98785 0.94775 1.69652 1.39645 1.39550 0.99843 0.86780 0.79250 0.82865 0.79360 1.19616 1.21388 1.18736 1.17530 0.85026 0.87782 0.81759 1.90680 1.48160 1.20377 1.85285 1.21949 0.93406 0.89383 0.96239 1.21972 0.99564 1.01548 0.89957 1.20255 0.96141 0.90007 1.00221 1.21060 1.05621 0.96099 0.88213 1.84306 1.61354 1.28051 1.35463 1.22243 0.89590 0.84786 0.82249 1.84634 1.70493 1.29501 1.36831 1.71023 1.25162 1.19624 1.10190 1.20067 0.97889 0.91709 0.89001 1.67809 1.10573 1.08643 1.26047 0.92931 0.93086 0.92464 0.92288 0.89052 0.91132 0.81561 0.83211 0.69606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.57 37.16 0.36 -2.37 16 2 C 0.09 1.88 4.30 -4.04 -0.02 1.87 16 3 N -0.42 -10.65 2.16 -115.87 -0.25 -10.90 16 4 C -0.30 -8.54 9.33 -15.02 -0.14 -8.68 16 5 H 0.11 3.40 8.01 -52.49 -0.42 2.98 16 6 C 0.06 1.71 5.39 -17.45 -0.09 1.62 16 7 N -0.85 -24.15 13.95 55.50 0.77 -23.37 16 8 Si 0.89 21.02 24.86 -169.99 -4.23 16.80 16 9 H -0.27 -5.98 6.58 56.52 0.37 -5.61 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 12 C 0.49 11.80 7.58 -12.31 -0.09 11.70 16 13 O -0.56 -14.90 16.25 5.29 0.09 -14.81 16 14 C 0.14 2.66 6.56 -83.03 -0.54 2.11 16 15 C -0.11 -1.69 9.61 -39.00 -0.37 -2.07 16 16 C -0.04 -0.51 10.17 -39.34 -0.40 -0.91 16 17 C -0.06 -0.84 7.44 -38.42 -0.29 -1.12 16 18 O -0.20 -2.62 10.78 -19.87 -0.21 -2.83 16 19 C 0.46 5.47 9.53 52.29 0.50 5.97 16 20 O -0.41 -3.05 13.62 -40.26 -0.55 -3.59 16 21 N -0.51 -7.40 11.37 -14.31 -0.16 -7.57 16 22 C 0.25 4.23 8.38 -157.07 -1.32 2.91 16 23 N -0.41 -7.83 4.09 -9.25 -0.04 -7.87 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.13 6.45 -51.92 -0.33 0.80 16 27 H 0.06 1.35 3.11 -51.93 -0.16 1.19 16 28 H 0.09 1.96 5.52 -51.93 -0.29 1.67 16 29 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.17 2.37 7.62 -52.49 -0.40 1.97 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.44 0.95 9.06 45.56 0.41 1.37 16 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -33.31 278.14 -4.42 -37.74 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -1.62 Total: 1.17 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: -2.41 Total: 11.04 kcal Atomic # 7 Polarization: -50.03 SS G_CDS: 0.32 Total: -49.71 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.68 Total: -21.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.23 Total: 16.80 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.31 -4.42 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327862023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.167 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds