Wall clock time and date at job start Mon Mar 30 2020 02:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46510 * 109.46807 * 2 1 4 4 C 1.36798 * 119.99759 * 267.37819 * 3 2 1 5 5 H 1.08002 * 119.99772 * 139.68032 * 4 3 2 6 6 C 1.39085 * 120.00631 * 319.68295 * 4 3 2 7 7 N 1.31335 * 120.00216 * 164.67467 * 6 4 3 8 8 Si 1.86801 * 119.99821 * 344.67557 * 6 4 3 9 9 H 1.48501 * 109.47179 * 90.82128 * 8 6 4 10 10 H 1.48494 * 109.47379 * 210.82001 * 8 6 4 11 11 H 1.48501 * 109.46903 * 330.82073 * 8 6 4 12 12 C 1.34772 * 119.99701 * 87.38489 * 3 2 1 13 13 O 1.21589 * 119.99671 * 174.26329 * 12 3 2 14 14 C 1.47888 * 120.00459 * 354.53958 * 12 3 2 15 15 C 1.39621 * 119.48037 * 174.46858 * 14 12 3 16 16 C 1.38425 * 119.39244 * 179.97438 * 15 14 12 17 17 C 1.38695 * 118.37384 * 359.97438 * 16 15 14 18 18 O 1.35048 * 134.02475 * 180.02562 * 17 16 15 19 19 C 1.34374 * 108.12898 * 179.97438 * 18 17 16 20 20 O 1.35087 * 124.89113 * 180.02562 * 19 18 17 21 21 N 1.30717 * 110.22102 * 0.02562 * 19 18 17 22 22 C 1.36024 * 108.82687 * 359.97438 * 21 19 18 23 23 N 1.32542 * 133.37240 * 180.32222 * 22 21 19 24 24 H 1.09000 * 109.47616 * 59.99975 * 1 2 3 25 25 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47459 * 299.99945 * 1 2 3 27 27 H 1.08999 * 109.47255 * 240.00316 * 2 1 3 28 28 H 1.08997 * 109.47321 * 119.99595 * 2 1 3 29 29 H 0.96999 * 119.99663 * 180.02562 * 7 6 4 30 30 H 1.08001 * 120.30738 * 359.97132 * 15 14 12 31 31 H 1.07999 * 120.81122 * 180.02562 * 16 15 14 32 32 H 0.96701 * 113.99973 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2973 2.0081 -1.1835 5 1 2.0279 3.0448 -1.3222 6 6 2.9279 1.3105 -2.2083 7 7 2.9290 1.7952 -3.4289 8 14 3.7732 -0.3160 -1.8484 9 1 2.8093 -1.4287 -2.0436 10 1 4.9239 -0.4905 -2.7707 11 1 4.2584 -0.3218 -0.4449 12 6 2.1926 2.0344 1.1660 13 8 2.6953 3.1414 1.1734 14 6 1.7781 1.4020 2.4369 15 6 2.0684 2.0359 3.6466 16 6 1.6791 1.4427 4.8351 17 6 1.0087 0.2299 4.7778 18 8 0.4978 -0.6050 5.7082 19 6 -0.0524 -1.6532 5.0725 20 8 -0.6618 -2.6935 5.6818 21 7 0.0869 -1.5213 3.7795 22 6 0.7455 -0.3586 3.5253 23 7 1.1310 0.2440 2.4095 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.3684 1.3084 -4.1436 30 1 2.5920 2.9805 3.6549 31 1 1.8915 1.9131 5.7838 32 1 -1.0019 -3.3623 5.0718 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327862023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:43 Heat of formation + Delta-G solvation = 1.261649 kcal Electronic energy + Delta-G solvation = -21508.459534 eV Core-core repulsion = 18051.522463 eV Total energy + Delta-G solvation = -3456.937070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.59455 -41.42774 -39.65108 -38.93475 -37.26490 -35.81402 -34.52200 -33.32931 -31.34442 -31.06101 -27.71597 -25.72043 -24.67715 -24.49103 -23.53776 -21.90554 -20.35821 -19.60138 -18.97150 -18.68198 -18.55374 -17.99897 -17.62374 -16.32453 -16.16272 -15.85762 -15.40933 -15.11548 -14.99459 -14.69112 -14.56356 -14.37219 -14.14142 -14.02047 -13.66120 -13.08950 -12.72339 -12.57807 -12.30240 -12.22673 -11.95641 -11.62697 -11.17913 -10.88509 -10.61120 -10.17602 -9.85389 -9.66483 -8.57238 -6.22858 -0.57579 -0.49925 0.37807 1.11448 1.18064 1.27400 1.39446 1.77482 1.83042 2.12734 2.51617 2.62365 2.94346 2.97085 3.20708 3.60477 3.76999 4.00070 4.14951 4.20999 4.37100 4.54541 4.68358 4.72015 4.75095 4.99082 5.09919 5.16221 5.41494 5.50010 5.78260 5.97351 6.25318 6.43863 6.62115 6.82016 7.16066 7.71611 8.58084 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026005 B = 0.005869 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.471967 B = 4769.817589 C = 5404.397413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.088 3.912 3 N -0.444 5.444 4 C -0.328 4.328 5 H 0.057 0.943 6 C 0.022 3.978 7 N -0.899 5.899 8 Si 0.949 3.051 9 H -0.242 1.242 10 H -0.280 1.280 11 H -0.267 1.267 12 C 0.495 3.505 13 O -0.596 6.596 14 C 0.111 3.889 15 C -0.107 4.107 16 C -0.009 4.009 17 C -0.045 4.045 18 O -0.195 6.195 19 C 0.490 3.510 20 O -0.393 6.393 21 N -0.530 5.530 22 C 0.235 3.765 23 N -0.433 5.433 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.103 0.897 29 H 0.284 0.716 30 H 0.176 0.824 31 H 0.202 0.798 32 H 0.466 0.534 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -11.277 19.728 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.033 4.033 3 N -0.163 5.163 4 C -0.457 4.457 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.536 5.536 8 Si 0.773 3.227 9 H -0.167 1.167 10 H -0.206 1.206 11 H -0.192 1.192 12 C 0.284 3.716 13 O -0.481 6.481 14 C -0.034 4.034 15 C -0.128 4.128 16 C -0.035 4.035 17 C -0.098 4.098 18 O -0.088 6.088 19 C 0.238 3.762 20 O -0.198 6.198 21 N -0.284 5.284 22 C -0.005 4.005 23 N -0.150 5.150 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.121 0.879 29 H 0.094 0.906 30 H 0.194 0.806 31 H 0.219 0.781 32 H 0.332 0.668 Dipole moment (debyes) X Y Z Total from point charges -5.956 -11.412 18.886 22.856 hybrid contribution 0.470 0.063 0.244 0.533 sum -5.486 -11.350 19.130 22.910 Atomic orbital electron populations 1.21753 0.94188 1.02108 1.00399 1.22304 0.96869 0.82701 1.01476 1.43835 1.54727 1.13238 1.04479 1.18770 1.39540 0.97852 0.89489 0.92486 1.26128 0.95524 1.02447 0.94149 1.69745 1.41321 1.41685 1.00803 0.85855 0.78707 0.79382 0.78785 1.16718 1.20628 1.19164 1.18253 0.83119 0.86984 0.83204 1.90631 1.48990 1.21924 1.86513 1.21226 0.96385 0.90765 0.95004 1.22048 0.99543 1.01820 0.89410 1.20660 0.93179 0.88705 1.00985 1.21221 1.04589 0.96300 0.87673 1.84344 1.61395 1.28239 1.34863 1.22420 0.87555 0.84695 0.81520 1.84717 1.69265 1.28686 1.37167 1.71035 1.26505 1.19311 1.11533 1.20213 0.98390 0.92672 0.89206 1.67442 1.10948 1.08659 1.27937 0.94661 0.90328 0.92682 0.93132 0.87896 0.90597 0.80635 0.78144 0.66823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 9.57 71.98 0.69 -4.29 16 2 C 0.09 3.92 4.30 86.38 0.37 4.29 16 3 N -0.44 -23.18 2.16 -638.78 -1.38 -24.56 16 4 C -0.33 -19.74 9.33 84.12 0.79 -18.95 16 5 H 0.06 3.90 8.01 -2.91 -0.02 3.88 16 6 C 0.02 1.24 5.39 84.97 0.46 1.70 16 7 N -0.90 -53.65 13.95 21.69 0.30 -53.34 16 8 Si 0.95 44.07 24.86 68.60 1.71 45.77 16 9 H -0.24 -10.10 6.58 99.48 0.65 -9.44 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 C 0.50 24.60 7.58 86.80 0.66 25.25 16 13 O -0.60 -33.07 16.25 -4.00 -0.06 -33.13 16 14 C 0.11 4.24 6.56 41.91 0.27 4.52 16 15 C -0.11 -3.06 9.61 22.65 0.22 -2.84 16 16 C -0.01 -0.19 10.17 22.42 0.23 0.03 16 17 C -0.04 -1.11 7.44 23.02 0.17 -0.94 16 18 O -0.19 -4.16 10.78 11.62 0.13 -4.04 16 19 C 0.49 9.33 9.53 130.41 1.24 10.57 16 20 O -0.39 -3.80 13.62 -61.34 -0.84 -4.64 16 21 N -0.53 -13.60 11.37 -427.49 -4.86 -18.46 16 22 C 0.23 7.19 8.38 134.44 1.13 8.31 16 23 N -0.43 -15.76 4.09 -183.16 -0.75 -16.51 16 24 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.05 2.17 6.45 -2.38 -0.02 2.16 16 27 H 0.05 2.30 3.11 -2.39 -0.01 2.29 16 28 H 0.10 4.33 5.52 -2.39 -0.01 4.31 16 29 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.18 4.68 7.62 -2.91 -0.02 4.66 16 31 H 0.20 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.47 -0.32 9.06 -74.06 -0.67 -1.00 16 Total: -1.00 -77.98 278.14 0.95 -77.03 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.48 Total: 4.21 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 6.22 Total: 27.65 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -6.68 Total: -112.87 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.77 Total: -41.80 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.71 Total: 45.77 kcal Total: -77.98 0.95 -77.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327862023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.294 kcal (2) G-P(sol) polarization free energy of solvation -77.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds