Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 C 1.50703 * 109.47259 * 119.99897 * 2 1 3 5 5 H 1.07999 * 120.00152 * 114.34946 * 4 2 1 6 6 C 1.37879 * 119.99898 * 294.35745 * 4 2 1 7 7 N 1.31507 * 119.99939 * 156.51722 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 336.79832 * 6 4 2 9 9 H 1.48500 * 109.47295 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47219 * 299.72276 * 8 6 4 11 11 H 1.48507 * 109.47298 * 59.72421 * 8 6 4 12 12 C 1.50703 * 109.47112 * 239.99736 * 2 1 3 13 13 O 1.20825 * 120.00110 * 240.00356 * 12 2 1 14 14 O 1.34228 * 119.99651 * 60.00053 * 12 2 1 15 15 C 1.45201 * 116.99993 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47456 * 179.97438 * 15 14 12 17 17 C 1.38444 * 119.88955 * 269.73126 * 16 15 14 18 18 C 1.38236 * 120.34259 * 179.72329 * 17 16 15 19 19 C 1.38284 * 120.12276 * 0.54997 * 18 17 16 20 20 F 1.35102 * 120.11106 * 179.70551 * 19 18 17 21 21 C 1.39867 * 119.77839 * 359.72253 * 19 18 17 22 22 C 1.43200 * 120.16897 * 180.02562 * 21 19 18 23 23 N 8.55450 * 103.38368 * 291.97213 * 2 1 3 24 24 C 1.37874 * 119.88872 * 90.00355 * 16 15 14 25 25 H 1.09007 * 109.46646 * 53.11482 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.11288 * 1 2 3 27 27 H 1.08999 * 109.47261 * 293.12213 * 1 2 3 28 28 H 0.96999 * 120.00644 * 355.21451 * 7 6 4 29 29 H 1.08999 * 109.47269 * 300.00664 * 15 14 12 30 30 H 1.09006 * 109.46556 * 59.99928 * 15 14 12 31 31 H 1.08002 * 119.82902 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.94202 * 180.25702 * 18 17 16 33 33 H 1.07995 * 120.06267 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7979 -0.1754 2.4794 7 7 1.8009 -0.9538 3.5393 8 14 1.4681 1.6539 2.6649 9 1 1.2419 1.9734 4.0974 10 1 2.6375 2.4209 2.1655 11 1 0.2627 2.0218 1.8794 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2276 -0.9858 -3.5896 16 6 1.7626 -0.3294 -4.8640 17 6 0.5729 -0.7265 -5.4502 18 6 0.1346 -0.1268 -6.6161 19 6 0.8891 0.8676 -7.2111 20 9 0.4635 1.4494 -8.3537 21 6 2.0946 1.2689 -6.6263 22 6 2.8823 2.2982 -7.2350 23 7 3.5101 3.1138 -7.7177 24 6 2.5261 0.6607 -5.4451 25 1 -0.3633 0.6169 -0.8220 26 1 -0.3634 -1.0202 -0.1232 27 1 -0.3634 0.4035 0.9451 28 1 1.8988 -1.9133 3.4362 29 1 3.3171 -0.9847 -3.5565 30 1 1.8641 -2.0129 -3.5568 31 1 -0.0178 -1.5060 -4.9922 32 1 -0.7964 -0.4387 -7.0656 33 1 3.4556 0.9657 -4.9877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329467587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = -83.114766 kcal Electronic energy + Delta-G solvation = -19952.042309 eV Core-core repulsion = 16471.526441 eV Total energy + Delta-G solvation = -3480.515868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.46343 -40.19290 -39.40527 -36.86201 -35.94424 -34.00166 -32.30002 -31.95054 -31.19229 -26.68971 -24.95162 -24.62169 -23.22955 -22.25600 -19.78303 -19.09635 -17.80616 -17.52881 -17.21604 -16.75357 -16.20829 -16.08563 -15.46081 -14.80450 -14.51737 -14.08526 -14.03170 -13.74019 -13.59024 -13.28358 -13.14846 -12.91068 -12.53132 -12.46525 -11.97209 -11.86212 -11.67040 -11.48056 -11.20349 -10.59438 -10.36137 -10.30357 -9.91924 -9.59972 -9.52174 -9.08803 -9.05673 -8.28294 -6.59987 -4.17557 0.16161 0.58502 2.25609 2.40106 3.04999 3.11060 3.32564 3.34457 3.38504 3.52716 3.58597 3.60680 4.20543 4.35399 4.41958 4.58889 4.69827 4.99613 5.10546 5.27569 5.32054 5.43379 5.45952 5.59735 5.81171 5.96606 6.15551 6.19842 6.37958 6.44055 6.77740 6.97220 7.08666 7.14678 7.74990 8.34120 8.62165 8.88347 9.48831 10.80314 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026809 B = 0.003614 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.184448 B = 7745.736990 C = 8021.047769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 H 0.056 0.944 4 C -0.610 4.610 5 H 0.077 0.923 6 C 0.042 3.958 7 N -0.890 5.890 8 Si 1.031 2.969 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.274 1.274 12 C 0.472 3.528 13 O -0.505 6.505 14 O -0.362 6.362 15 C 0.100 3.900 16 C -0.095 4.095 17 C -0.036 4.036 18 C -0.154 4.154 19 C 0.151 3.849 20 F -0.127 7.127 21 C -0.064 4.064 22 C 0.254 3.746 23 N -0.403 5.403 24 C -0.019 4.019 25 H 0.037 0.963 26 H 0.047 0.953 27 H 0.064 0.936 28 H 0.272 0.728 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 1.470 -19.677 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.015 3.985 3 H 0.073 0.927 4 C -0.647 4.647 5 H 0.095 0.905 6 C -0.165 4.165 7 N -0.522 5.522 8 Si 0.858 3.142 9 H -0.207 1.207 10 H -0.207 1.207 11 H -0.200 1.200 12 C 0.316 3.684 13 O -0.390 6.390 14 O -0.281 6.281 15 C 0.026 3.974 16 C -0.096 4.096 17 C -0.054 4.054 18 C -0.173 4.173 19 C 0.129 3.871 20 F -0.106 7.106 21 C -0.069 4.069 22 C -0.062 4.062 23 N -0.078 5.078 24 C -0.040 4.040 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.646 3.615 -19.320 19.991 hybrid contribution 0.080 -1.552 -1.249 1.994 sum -3.566 2.063 -20.570 20.978 Atomic orbital electron populations 1.22083 0.96055 1.00690 1.00976 1.19059 0.94386 0.97020 0.88037 0.92681 1.21901 1.41700 1.11690 0.89381 0.90497 1.25694 0.93227 1.05799 0.91757 1.70832 1.42916 1.06653 1.31789 0.84230 0.77412 0.75893 0.76671 1.20703 1.20713 1.19951 1.24853 0.76824 0.83325 0.83404 1.90539 1.35672 1.26315 1.86513 1.86685 1.70533 1.55855 1.15058 1.21619 0.99406 0.95037 0.81332 1.19600 0.95707 0.97861 0.96409 1.21272 0.93879 0.97455 0.92824 1.21106 1.01488 0.97122 0.97549 1.17678 0.92380 0.93712 0.83368 1.91558 1.89362 1.82756 1.46879 1.15905 0.94463 0.98215 0.98288 1.25312 0.93806 0.93182 0.93885 1.81287 1.08601 1.09969 1.07926 1.21066 0.99635 0.92096 0.91160 0.94363 0.93432 0.91739 0.91740 0.90216 0.90091 0.83590 0.83197 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.85 37.16 0.33 -2.49 16 2 C 0.03 0.79 2.34 -92.92 -0.22 0.57 16 3 H 0.06 1.20 6.72 -51.93 -0.35 0.85 16 4 C -0.61 -16.75 8.57 -34.44 -0.30 -17.05 16 5 H 0.08 2.37 7.02 -52.49 -0.37 2.01 16 6 C 0.04 1.17 5.19 -17.82 -0.09 1.07 16 7 N -0.89 -26.36 13.70 55.43 0.76 -25.60 16 8 Si 1.03 23.43 26.45 -169.99 -4.50 18.93 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.61 6.15 56.52 0.35 -5.26 16 12 C 0.47 9.92 7.24 36.01 0.26 10.18 16 13 O -0.50 -11.95 15.22 -18.75 -0.29 -12.24 16 14 O -0.36 -5.97 10.13 -39.25 -0.40 -6.37 16 15 C 0.10 1.22 5.58 36.01 0.20 1.42 16 16 C -0.10 -0.88 5.51 -104.68 -0.58 -1.46 16 17 C -0.04 -0.26 9.68 -39.51 -0.38 -0.64 16 18 C -0.15 -1.03 10.01 -39.57 -0.40 -1.43 16 19 C 0.15 1.28 7.28 -38.96 -0.28 1.00 16 20 F -0.13 -1.22 16.81 2.25 0.04 -1.18 16 21 C -0.06 -0.60 5.74 -106.82 -0.61 -1.21 16 22 C 0.25 2.86 14.98 -22.45 -0.34 2.52 16 23 N -0.40 -5.39 18.54 41.87 0.78 -4.62 16 24 C -0.02 -0.17 9.40 -39.18 -0.37 -0.54 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.94 8.13 -51.93 -0.42 0.52 16 27 H 0.06 1.34 5.48 -51.93 -0.28 1.06 16 28 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 29 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 30 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 32 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 306.15 15.07 4.61 4.61 Total: -1.00 -31.86 306.15 -4.92 -36.78 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.16 Total: -2.27 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -2.77 Total: -8.05 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 1.54 Total: -30.22 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.68 Total: -18.61 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.50 Total: 18.93 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.86 -4.92 -36.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329467587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.333 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds