Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 C 1.50703 * 109.47259 * 119.99897 * 2 1 3 5 5 H 1.07999 * 120.00152 * 114.34946 * 4 2 1 6 6 C 1.37879 * 119.99898 * 294.35745 * 4 2 1 7 7 N 1.31507 * 119.99939 * 156.51722 * 6 4 2 8 8 Si 1.86800 * 119.99920 * 336.79832 * 6 4 2 9 9 H 1.48500 * 109.47295 * 179.72490 * 8 6 4 10 10 H 1.48504 * 109.47219 * 299.72276 * 8 6 4 11 11 H 1.48507 * 109.47298 * 59.72421 * 8 6 4 12 12 C 1.50703 * 109.47112 * 239.99736 * 2 1 3 13 13 O 1.20825 * 120.00110 * 240.00356 * 12 2 1 14 14 O 1.34228 * 119.99651 * 60.00053 * 12 2 1 15 15 C 1.45201 * 116.99993 * 179.97438 * 14 12 2 16 16 C 1.50699 * 109.47456 * 179.97438 * 15 14 12 17 17 C 1.38444 * 119.88955 * 269.73126 * 16 15 14 18 18 C 1.38236 * 120.34259 * 179.72329 * 17 16 15 19 19 C 1.38284 * 120.12276 * 0.54997 * 18 17 16 20 20 F 1.35102 * 120.11106 * 179.70551 * 19 18 17 21 21 C 1.39867 * 119.77839 * 359.72253 * 19 18 17 22 22 C 1.43200 * 120.16897 * 180.02562 * 21 19 18 23 23 N 8.55450 * 103.38368 * 291.97213 * 2 1 3 24 24 C 1.37874 * 119.88872 * 90.00355 * 16 15 14 25 25 H 1.09007 * 109.46646 * 53.11482 * 1 2 3 26 26 H 1.08994 * 109.47507 * 173.11288 * 1 2 3 27 27 H 1.08999 * 109.47261 * 293.12213 * 1 2 3 28 28 H 0.96999 * 120.00644 * 355.21451 * 7 6 4 29 29 H 1.08999 * 109.47269 * 300.00664 * 15 14 12 30 30 H 1.09006 * 109.46556 * 59.99928 * 15 14 12 31 31 H 1.08002 * 119.82902 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.94202 * 180.25702 * 18 17 16 33 33 H 1.07995 * 120.06267 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5760 -1.6386 1.1340 6 6 1.7979 -0.1754 2.4794 7 7 1.8009 -0.9538 3.5393 8 14 1.4681 1.6539 2.6649 9 1 1.2419 1.9734 4.0974 10 1 2.6375 2.4209 2.1655 11 1 0.2627 2.0218 1.8794 12 6 2.0323 -0.7105 -1.2305 13 8 2.7269 -1.6929 -1.1196 14 8 1.7080 -0.2519 -2.4496 15 6 2.2276 -0.9858 -3.5896 16 6 1.7626 -0.3294 -4.8640 17 6 0.5729 -0.7265 -5.4502 18 6 0.1346 -0.1268 -6.6161 19 6 0.8891 0.8676 -7.2111 20 9 0.4635 1.4494 -8.3537 21 6 2.0946 1.2689 -6.6263 22 6 2.8823 2.2982 -7.2350 23 7 3.5101 3.1138 -7.7177 24 6 2.5261 0.6607 -5.4451 25 1 -0.3633 0.6169 -0.8220 26 1 -0.3634 -1.0202 -0.1232 27 1 -0.3634 0.4035 0.9451 28 1 1.8988 -1.9133 3.4362 29 1 3.3171 -0.9847 -3.5565 30 1 1.8641 -2.0129 -3.5568 31 1 -0.0178 -1.5060 -4.9922 32 1 -0.7964 -0.4387 -7.0656 33 1 3.4556 0.9657 -4.9877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329467587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = -101.695187 kcal Electronic energy + Delta-G solvation = -19952.848016 eV Core-core repulsion = 16471.526441 eV Total energy + Delta-G solvation = -3481.321575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.16655 -41.47703 -40.37493 -37.85944 -37.32388 -35.91000 -33.47346 -32.84811 -32.57665 -27.66725 -26.82798 -25.31713 -24.77624 -23.09280 -21.44665 -19.91868 -19.49980 -18.47446 -18.36913 -18.00807 -17.46018 -16.91271 -16.79637 -15.86388 -15.40881 -15.21499 -14.96328 -14.91095 -14.64504 -14.51013 -14.36302 -14.22584 -13.92849 -13.61335 -13.32704 -13.17590 -13.00553 -12.66119 -12.35297 -12.32642 -12.02572 -11.65798 -11.60856 -11.11716 -11.06729 -10.38595 -10.22997 -9.88342 -8.79997 -6.37668 -0.53279 -0.07287 1.38966 1.41185 1.54206 1.56808 1.61029 1.79267 2.02982 2.54477 2.57170 2.64780 2.92532 3.02289 3.50776 3.60732 3.88940 4.01389 4.20469 4.28572 4.47095 4.47325 4.57841 4.69049 4.78702 4.83456 4.92365 4.98322 5.15124 5.28892 5.40133 5.53913 5.58345 5.82822 6.07188 6.23457 6.59207 7.03122 7.38717 8.59492 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.026809 B = 0.003614 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.184448 B = 7745.736990 C = 8021.047769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.023 3.977 3 H 0.075 0.925 4 C -0.618 4.618 5 H 0.025 0.975 6 C -0.007 4.007 7 N -0.925 5.925 8 Si 1.073 2.927 9 H -0.289 1.289 10 H -0.264 1.264 11 H -0.229 1.229 12 C 0.480 3.520 13 O -0.543 6.543 14 O -0.351 6.351 15 C 0.095 3.905 16 C -0.105 4.105 17 C -0.022 4.022 18 C -0.139 4.139 19 C 0.151 3.849 20 F -0.134 7.134 21 C -0.075 4.075 22 C 0.272 3.728 23 N -0.448 5.448 24 C -0.014 4.014 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.254 0.746 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 2.808 -21.543 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.003 3.997 3 H 0.092 0.908 4 C -0.655 4.655 5 H 0.043 0.957 6 C -0.206 4.206 7 N -0.559 5.559 8 Si 0.892 3.108 9 H -0.215 1.215 10 H -0.189 1.189 11 H -0.153 1.153 12 C 0.325 3.675 13 O -0.433 6.433 14 O -0.269 6.269 15 C 0.022 3.978 16 C -0.105 4.105 17 C -0.041 4.041 18 C -0.158 4.158 19 C 0.129 3.871 20 F -0.112 7.112 21 C -0.080 4.080 22 C -0.042 4.042 23 N -0.124 5.124 24 C -0.034 4.034 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.186 0.814 32 H 0.198 0.802 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.657 4.954 -21.244 22.535 hybrid contribution 0.717 -2.093 -0.793 2.350 sum -4.940 2.861 -22.037 22.764 Atomic orbital electron populations 1.21962 0.93501 1.01272 1.02306 1.19025 0.96292 0.97270 0.87117 0.90774 1.21965 1.41111 1.10207 0.92206 0.95662 1.27252 0.92241 1.09860 0.91281 1.70971 1.46058 1.05787 1.33045 0.83741 0.79769 0.70196 0.77049 1.21507 1.18877 1.15251 1.24380 0.76064 0.82444 0.84644 1.90535 1.37401 1.27955 1.87372 1.86605 1.69946 1.55765 1.14545 1.21921 0.99702 0.95504 0.80656 1.19377 0.97007 0.98686 0.95460 1.21535 0.92866 0.97179 0.92516 1.21371 1.01991 0.95639 0.96762 1.17886 0.92195 0.93922 0.83090 1.91551 1.89372 1.82972 1.47322 1.15895 0.94929 0.98373 0.98777 1.25622 0.92997 0.92723 0.92887 1.81299 1.10064 1.11575 1.09467 1.21081 0.99799 0.91710 0.90855 0.90249 0.94059 0.92346 0.93720 0.90161 0.89219 0.81351 0.80153 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.93 8.85 71.98 0.64 -4.30 16 2 C 0.02 0.99 2.34 -12.28 -0.03 0.96 16 3 H 0.07 3.00 6.72 -2.39 -0.02 2.99 16 4 C -0.62 -34.62 8.57 25.60 0.22 -34.40 16 5 H 0.03 1.64 7.02 -2.91 -0.02 1.62 16 6 C -0.01 -0.37 5.19 84.66 0.44 0.06 16 7 N -0.92 -56.60 13.70 21.45 0.29 -56.31 16 8 Si 1.07 45.64 26.45 68.60 1.81 47.46 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.23 -8.12 6.15 99.48 0.61 -7.51 16 12 C 0.48 19.62 7.24 71.24 0.52 20.14 16 13 O -0.54 -26.08 15.22 21.97 0.33 -25.75 16 14 O -0.35 -10.65 10.13 -51.39 -0.52 -11.17 16 15 C 0.10 2.10 5.58 71.24 0.40 2.50 16 16 C -0.10 -1.62 5.51 -19.90 -0.11 -1.73 16 17 C -0.02 -0.23 9.68 22.32 0.22 -0.02 16 18 C -0.14 -1.26 10.01 22.28 0.22 -1.04 16 19 C 0.15 2.12 7.28 22.68 0.17 2.29 16 20 F -0.13 -2.24 16.81 44.97 0.76 -1.48 16 21 C -0.08 -1.23 5.74 -21.29 -0.12 -1.36 16 22 C 0.27 5.86 14.98 88.32 1.32 7.19 16 23 N -0.45 -11.87 18.54 19.01 0.35 -11.52 16 24 C -0.01 -0.21 9.40 22.53 0.21 0.00 16 25 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 26 H 0.04 1.55 8.13 -2.39 -0.02 1.53 16 27 H 0.06 2.23 5.48 -2.39 -0.01 2.22 16 28 H 0.25 15.97 8.73 -92.71 -0.81 15.16 16 29 H 0.08 1.78 8.08 -2.39 -0.02 1.76 16 30 H 0.09 1.86 8.07 -2.38 -0.02 1.84 16 31 H 0.17 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 33 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -72.67 306.15 8.14 -64.53 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: 1.02 Total: 3.94 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 4.09 Total: -9.70 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: 0.65 Total: -67.83 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.19 Total: -36.92 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.76 Total: -1.48 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.81 Total: 47.46 kcal Total: -72.67 8.14 -64.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329467587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.163 kcal (2) G-P(sol) polarization free energy of solvation -72.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds