Wall clock time and date at job start Mon Mar 30 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 126.58511 * 2 1 4 4 C 1.36671 * 106.83861 * 180.12405 * 3 2 1 5 5 C 1.47382 * 125.78132 * 179.83666 * 4 3 2 6 6 O 1.21515 * 120.00144 * 359.72542 * 5 4 3 7 7 O 1.34748 * 120.00020 * 179.71566 * 5 4 3 8 8 C 1.45200 * 117.00219 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47321 * 330.00005 * 8 7 5 10 10 C 1.50706 * 109.46954 * 210.00454 * 8 7 5 11 11 H 1.07995 * 120.00167 * 359.72237 * 10 8 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 8 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10 18 18 C 1.50698 * 109.46811 * 90.00536 * 8 7 5 19 19 C 1.34515 * 125.78329 * 219.99738 * 18 8 7 20 20 C 1.41387 * 106.83718 * 180.02562 * 19 18 8 21 21 C 1.34512 * 106.84034 * 359.97438 * 20 19 18 22 22 O 1.34293 * 125.79247 * 39.69618 * 18 8 7 23 23 N 1.34437 * 108.43440 * 359.57843 * 4 3 2 24 24 N 1.28763 * 109.51570 * 0.25967 * 23 4 3 25 25 H 1.08998 * 109.47509 * 270.31558 * 1 2 3 26 26 H 1.09004 * 109.47285 * 30.31962 * 1 2 3 27 27 H 1.09004 * 109.46910 * 150.31825 * 1 2 3 28 28 H 1.08006 * 126.58058 * 0.02562 * 3 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 1.07998 * 126.58679 * 0.04046 * 19 18 8 31 31 H 1.08004 * 126.57788 * 179.97438 * 20 19 18 32 32 H 1.08001 * 125.79100 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2683 1.0823 0.0000 4 6 3.5546 0.6205 -0.0028 5 6 4.7696 1.4547 -0.0073 6 8 4.6749 2.6661 -0.0138 7 8 5.9856 0.8740 -0.0040 8 6 7.1380 1.7574 -0.0081 9 1 6.8851 2.6821 -0.5267 10 6 8.2854 1.0828 -0.7149 11 1 8.1624 0.0878 -1.1164 12 6 9.4939 1.7339 -0.8442 13 7 9.6453 2.9434 -0.3504 14 14 10.9159 0.8981 -1.7209 15 1 10.8667 1.2261 -3.1684 16 1 12.2000 1.3762 -1.1484 17 1 10.8116 -0.5725 -1.5428 18 6 7.5362 2.0700 1.4113 19 6 7.9430 3.2679 1.8683 20 6 8.2133 3.1100 3.2471 21 6 7.9550 1.8251 3.5501 22 8 7.5398 1.2014 2.4355 23 7 3.5239 -0.7235 0.0049 24 7 2.3007 -1.1257 0.0068 25 1 -0.3634 0.0057 1.0276 26 1 -0.3634 0.8871 -0.5188 27 1 -0.3633 -0.8929 -0.5089 28 1 1.9555 2.1160 0.0004 29 1 10.4956 3.4012 -0.4412 30 1 8.0436 4.1762 1.2928 31 1 8.5606 3.8743 3.9266 32 1 8.0593 1.3729 4.5253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:55 Heat of formation + Delta-G solvation = 37.855160 kcal Electronic energy + Delta-G solvation = -20963.733700 eV Core-core repulsion = 17508.383443 eV Total energy + Delta-G solvation = -3455.350257 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.13842 -41.30184 -39.24039 -35.73386 -34.71584 -33.22004 -31.66723 -31.04778 -29.60272 -28.04789 -26.61144 -24.22376 -22.65255 -22.20246 -20.72984 -20.31953 -19.32047 -17.94872 -16.86279 -16.61856 -16.32039 -16.05417 -15.34186 -14.94803 -14.78130 -14.61831 -14.40563 -13.63823 -13.49702 -13.05421 -12.75053 -12.13219 -12.00698 -11.71663 -11.53537 -11.24384 -11.18499 -11.09036 -10.90531 -10.43114 -10.34989 -10.12329 -9.93879 -9.37197 -9.27362 -8.77804 -8.60442 -7.22296 -6.17437 -4.34257 1.09467 1.81528 1.96490 2.89920 3.25499 3.30394 3.33926 3.44524 3.48843 3.96287 4.22898 4.25435 4.28590 4.38208 4.69636 4.83989 4.97211 5.09857 5.19425 5.37054 5.82294 5.94558 6.10299 6.24443 6.39664 6.69584 7.01361 7.15313 7.26570 7.35794 7.72729 7.73685 7.86221 7.98310 8.37417 8.52986 8.81918 9.32168 10.81704 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.005348 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.965879 B = 5234.524890 C = 6000.718648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.369 5.369 3 C 0.093 3.907 4 C -0.072 4.072 5 C 0.545 3.455 6 O -0.512 6.512 7 O -0.326 6.326 8 C 0.297 3.703 9 H 0.081 0.919 10 C -0.529 4.529 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.869 5.869 14 Si 0.914 3.086 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.026 3.974 19 C -0.178 4.178 20 C -0.218 4.218 21 C -0.088 4.088 22 O -0.175 6.175 23 N -0.175 5.175 24 N -0.072 5.072 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.208 0.792 29 H 0.268 0.732 30 H 0.142 0.858 31 H 0.130 0.870 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.492 -1.053 2.467 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.154 5.154 3 C -0.064 4.064 4 C -0.210 4.210 5 C 0.387 3.613 6 O -0.401 6.401 7 O -0.240 6.240 8 C 0.244 3.756 9 H 0.099 0.901 10 C -0.566 4.566 11 H 0.098 0.902 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.741 3.259 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.025 4.025 19 C -0.198 4.198 20 C -0.238 4.238 21 C -0.155 4.155 22 O -0.071 6.071 23 N -0.049 5.049 24 N -0.053 5.053 25 H 0.107 0.893 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.225 0.775 29 H 0.078 0.922 30 H 0.159 0.841 31 H 0.148 0.852 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -15.400 -2.355 2.467 15.773 hybrid contribution 0.902 1.149 -0.103 1.464 sum -14.498 -1.207 2.364 14.739 Atomic orbital electron populations 1.22160 0.72667 1.05684 1.04647 1.50386 1.09063 1.05783 1.50169 1.23314 0.89912 0.95053 0.98082 1.20612 0.92664 0.90234 1.17461 1.19448 0.83775 0.85213 0.72885 1.90824 1.87742 1.14252 1.47282 1.86716 1.13856 1.42229 1.81242 1.19281 0.79755 0.91458 0.85091 0.90144 1.20915 0.94933 1.03938 1.36812 0.90221 1.24930 0.98527 0.95025 0.95090 1.70032 1.25799 1.11952 1.42572 0.86224 0.80421 0.79911 0.79385 1.20175 1.20929 1.19367 1.23523 1.02710 0.87270 0.89037 1.21204 1.06607 0.98954 0.92998 1.21679 1.08369 0.96790 0.96957 1.23613 1.08122 0.93224 0.90552 1.84014 1.66753 1.39753 1.16607 1.74832 1.11792 1.10280 1.07990 1.82052 0.93613 1.06493 1.23163 0.89324 0.88463 0.88123 0.77545 0.92196 0.84066 0.85160 0.79929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 11.51 59.85 0.69 1.12 16 2 N -0.37 -4.11 4.03 -67.84 -0.27 -4.39 16 3 C 0.09 1.16 11.31 -16.82 -0.19 0.97 16 4 C -0.07 -1.30 7.02 -83.57 -0.59 -1.88 16 5 C 0.55 11.95 7.93 34.45 0.27 12.22 16 6 O -0.51 -11.62 16.12 -19.28 -0.31 -11.93 16 7 O -0.33 -8.23 9.85 -42.72 -0.42 -8.65 16 8 C 0.30 8.05 2.42 -29.03 -0.07 7.98 16 9 H 0.08 2.27 7.15 -51.93 -0.37 1.90 16 10 C -0.53 -14.95 8.89 -34.44 -0.31 -15.25 16 11 H 0.08 2.24 7.81 -52.49 -0.41 1.83 16 12 C 0.07 1.91 5.30 -17.82 -0.09 1.82 16 13 N -0.87 -24.15 10.95 55.43 0.61 -23.54 16 14 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.03 0.68 5.54 -35.63 -0.20 0.48 16 19 C -0.18 -4.46 9.17 -39.70 -0.36 -4.83 16 20 C -0.22 -4.73 10.91 -39.70 -0.43 -5.16 16 21 C -0.09 -1.85 12.09 29.41 0.36 -1.50 16 22 O -0.18 -4.45 10.65 4.36 0.05 -4.40 16 23 N -0.17 -3.29 12.39 32.83 0.41 -2.88 16 24 N -0.07 -1.12 13.78 60.35 0.83 -0.29 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.21 1.79 8.06 -52.48 -0.42 1.36 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.14 3.58 7.87 -52.49 -0.41 3.17 16 31 H 0.13 2.37 8.06 -52.48 -0.42 1.95 16 32 H 0.18 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -34.68 300.47 -3.40 -38.08 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -2.87 Total: 1.26 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.92 Total: -4.03 kcal Atomic # 7 Polarization: -32.67 SS G_CDS: 1.57 Total: -31.10 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.69 Total: -24.99 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.68 -3.40 -38.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.934 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds