Wall clock time and date at job start Mon Mar 30 2020 02:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34782 * 126.58511 * 2 1 4 4 C 1.36671 * 106.83861 * 180.12405 * 3 2 1 5 5 C 1.47382 * 125.78132 * 179.83666 * 4 3 2 6 6 O 1.21515 * 120.00144 * 359.72542 * 5 4 3 7 7 O 1.34748 * 120.00020 * 179.71566 * 5 4 3 8 8 C 1.45200 * 117.00219 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47321 * 330.00005 * 8 7 5 10 10 C 1.50706 * 109.46954 * 210.00454 * 8 7 5 11 11 H 1.07995 * 120.00167 * 359.72237 * 10 8 7 12 12 C 1.37879 * 119.99394 * 179.97438 * 10 8 7 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47474 * 90.00322 * 14 12 10 16 16 H 1.48507 * 109.46754 * 210.00056 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99887 * 14 12 10 18 18 C 1.50698 * 109.46811 * 90.00536 * 8 7 5 19 19 C 1.34515 * 125.78329 * 219.99738 * 18 8 7 20 20 C 1.41387 * 106.83718 * 180.02562 * 19 18 8 21 21 C 1.34512 * 106.84034 * 359.97438 * 20 19 18 22 22 O 1.34293 * 125.79247 * 39.69618 * 18 8 7 23 23 N 1.34437 * 108.43440 * 359.57843 * 4 3 2 24 24 N 1.28763 * 109.51570 * 0.25967 * 23 4 3 25 25 H 1.08998 * 109.47509 * 270.31558 * 1 2 3 26 26 H 1.09004 * 109.47285 * 30.31962 * 1 2 3 27 27 H 1.09004 * 109.46910 * 150.31825 * 1 2 3 28 28 H 1.08006 * 126.58058 * 0.02562 * 3 2 1 29 29 H 0.96996 * 119.99730 * 179.97438 * 13 12 10 30 30 H 1.07998 * 126.58679 * 0.04046 * 19 18 8 31 31 H 1.08004 * 126.57788 * 179.97438 * 20 19 18 32 32 H 1.08001 * 125.79100 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2683 1.0823 0.0000 4 6 3.5546 0.6205 -0.0028 5 6 4.7696 1.4547 -0.0073 6 8 4.6749 2.6661 -0.0138 7 8 5.9856 0.8740 -0.0040 8 6 7.1380 1.7574 -0.0081 9 1 6.8851 2.6821 -0.5267 10 6 8.2854 1.0828 -0.7149 11 1 8.1624 0.0878 -1.1164 12 6 9.4939 1.7339 -0.8442 13 7 9.6453 2.9434 -0.3504 14 14 10.9159 0.8981 -1.7209 15 1 10.8667 1.2261 -3.1684 16 1 12.2000 1.3762 -1.1484 17 1 10.8116 -0.5725 -1.5428 18 6 7.5362 2.0700 1.4113 19 6 7.9430 3.2679 1.8683 20 6 8.2133 3.1100 3.2471 21 6 7.9550 1.8251 3.5501 22 8 7.5398 1.2014 2.4355 23 7 3.5239 -0.7235 0.0049 24 7 2.3007 -1.1257 0.0068 25 1 -0.3634 0.0057 1.0276 26 1 -0.3634 0.8871 -0.5188 27 1 -0.3633 -0.8929 -0.5089 28 1 1.9555 2.1160 0.0004 29 1 10.4956 3.4012 -0.4412 30 1 8.0436 4.1762 1.2928 31 1 8.5606 3.8743 3.9266 32 1 8.0593 1.3729 4.5253 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:55 Heat of formation + Delta-G solvation = 13.270291 kcal Electronic energy + Delta-G solvation = -20964.799780 eV Core-core repulsion = 17508.383443 eV Total energy + Delta-G solvation = -3456.416337 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.30695 -43.15276 -40.99336 -37.57082 -35.69144 -35.24514 -33.53366 -32.34268 -31.44058 -28.91261 -28.47175 -25.85392 -24.40741 -23.23090 -22.43111 -21.97501 -21.11407 -19.45372 -18.66601 -18.46355 -17.65341 -17.34908 -17.00388 -16.56743 -16.48482 -16.30405 -15.72754 -15.00904 -14.71152 -14.22043 -14.02925 -13.82069 -13.52066 -13.45586 -13.22267 -13.11013 -13.03011 -12.79301 -12.27457 -12.21707 -12.05106 -11.72197 -11.37217 -11.36072 -10.78929 -10.50020 -10.47446 -9.10986 -8.23428 -6.51203 0.02313 0.40484 1.04228 1.16233 1.40236 1.42768 1.53323 1.81168 1.93571 2.11390 2.38990 2.45318 3.01457 3.16865 3.52066 3.82594 3.83837 4.18586 4.40333 4.41598 4.42234 4.57927 4.63632 4.71189 4.75224 5.16364 5.30791 5.40393 5.41228 5.46005 5.65535 5.80180 5.94785 6.48599 6.52104 6.74753 6.94786 7.19883 8.73920 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.005348 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.965879 B = 5234.524890 C = 6000.718648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.347 5.347 3 C 0.129 3.871 4 C -0.114 4.114 5 C 0.541 3.459 6 O -0.530 6.530 7 O -0.347 6.347 8 C 0.301 3.699 9 H 0.052 0.948 10 C -0.559 4.559 11 H 0.068 0.932 12 C 0.029 3.971 13 N -0.888 5.888 14 Si 0.979 3.021 15 H -0.264 1.264 16 H -0.275 1.275 17 H -0.270 1.270 18 C -0.006 4.006 19 C -0.188 4.188 20 C -0.224 4.224 21 C -0.073 4.073 22 O -0.199 6.199 23 N -0.218 5.218 24 N -0.086 5.086 25 H 0.112 0.888 26 H 0.135 0.865 27 H 0.112 0.888 28 H 0.251 0.749 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.168 0.832 32 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 -0.986 3.501 17.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.131 5.131 3 C -0.030 4.030 4 C -0.251 4.251 5 C 0.385 3.615 6 O -0.420 6.420 7 O -0.262 6.262 8 C 0.247 3.753 9 H 0.070 0.930 10 C -0.596 4.596 11 H 0.086 0.914 12 C -0.174 4.174 13 N -0.522 5.522 14 Si 0.802 3.198 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.195 1.195 18 C -0.057 4.057 19 C -0.207 4.207 20 C -0.243 4.243 21 C -0.140 4.140 22 O -0.096 6.096 23 N -0.092 5.092 24 N -0.067 5.067 25 H 0.130 0.870 26 H 0.153 0.847 27 H 0.131 0.869 28 H 0.267 0.733 29 H 0.081 0.919 30 H 0.145 0.855 31 H 0.186 0.814 32 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -16.813 -2.301 3.500 17.327 hybrid contribution 1.091 1.160 -0.354 1.632 sum -15.722 -1.141 3.146 16.074 Atomic orbital electron populations 1.22840 0.68468 1.08204 1.06959 1.50821 1.10988 1.04157 1.47086 1.23826 0.87836 0.96789 0.94545 1.20429 0.92780 0.90215 1.21713 1.20049 0.83812 0.85699 0.71972 1.90780 1.87879 1.14997 1.48358 1.86689 1.14940 1.42527 1.82031 1.18884 0.80252 0.90332 0.85833 0.93007 1.21123 0.96337 1.03844 1.38312 0.91393 1.25755 1.00609 0.95617 0.95461 1.70140 1.26426 1.12813 1.42845 0.85242 0.77171 0.78647 0.78742 1.18910 1.19952 1.19455 1.23321 1.04945 0.88119 0.89272 1.21302 1.06500 0.98012 0.94932 1.22043 1.08378 0.98160 0.95690 1.24683 1.05145 0.93166 0.90983 1.83984 1.67597 1.40436 1.17591 1.74800 1.13681 1.11048 1.09675 1.81918 0.93212 1.08133 1.23435 0.86998 0.84710 0.86942 0.73309 0.91886 0.85450 0.81405 0.74649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.51 127.77 1.47 1.86 16 2 N -0.35 -6.81 4.03 -368.55 -1.49 -8.29 16 3 C 0.13 2.96 11.31 83.87 0.95 3.91 16 4 C -0.11 -4.15 7.02 40.79 0.29 -3.87 16 5 C 0.54 24.92 7.93 70.23 0.56 25.48 16 6 O -0.53 -25.14 16.12 19.79 0.32 -24.82 16 7 O -0.35 -18.69 9.85 -54.58 -0.54 -19.22 16 8 C 0.30 17.29 2.42 29.10 0.07 17.36 16 9 H 0.05 3.18 7.15 -2.39 -0.02 3.16 16 10 C -0.56 -33.20 8.89 25.60 0.23 -32.97 16 11 H 0.07 4.05 7.81 -2.91 -0.02 4.03 16 12 C 0.03 1.64 5.30 84.66 0.45 2.08 16 13 N -0.89 -50.58 10.95 21.45 0.23 -50.35 16 14 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 15 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 C -0.01 -0.33 5.54 24.83 0.14 -0.20 16 19 C -0.19 -9.62 9.17 22.19 0.20 -9.41 16 20 C -0.22 -9.35 10.91 22.19 0.24 -9.10 16 21 C -0.07 -2.97 12.09 66.97 0.81 -2.16 16 22 O -0.20 -10.23 10.65 -1.11 -0.01 -10.24 16 23 N -0.22 -8.41 12.39 -50.04 -0.62 -9.03 16 24 N -0.09 -2.61 13.78 37.02 0.51 -2.10 16 25 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.13 -0.17 8.14 -2.38 -0.02 -0.19 16 27 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.25 3.38 8.06 -2.91 -0.02 3.35 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.13 6.75 7.87 -2.91 -0.02 6.72 16 31 H 0.17 5.59 8.06 -2.91 -0.02 5.57 16 32 H 0.24 6.62 8.06 -2.91 -0.02 6.60 16 Total: -1.00 -81.50 300.47 7.00 -74.50 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.16 Total: 10.31 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.40 Total: -7.02 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.36 Total: -69.77 kcal Atomic # 8 Polarization: -54.06 SS G_CDS: -0.23 Total: -54.29 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -81.50 7.00 -74.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.775 kcal (2) G-P(sol) polarization free energy of solvation -81.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds