Wall clock time and date at job start Mon Mar 30 2020 02:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47443 * 2 1 4 4 C 1.36874 * 119.99826 * 82.74443 * 3 2 1 5 5 H 1.07996 * 119.99476 * 171.49736 * 4 3 2 6 6 C 1.39026 * 119.99806 * 351.50258 * 4 3 2 7 7 N 1.31375 * 120.00512 * 1.63792 * 6 4 3 8 8 Si 1.86809 * 119.99444 * 181.63765 * 6 4 3 9 9 H 1.48492 * 109.47081 * 90.00098 * 8 6 4 10 10 H 1.48502 * 109.46532 * 210.00130 * 8 6 4 11 11 H 1.48498 * 109.47311 * 329.99894 * 8 6 4 12 12 C 1.34774 * 120.00001 * 262.74976 * 3 2 1 13 13 O 1.21671 * 119.99893 * 184.68371 * 12 3 2 14 14 C 1.47154 * 120.00088 * 4.67485 * 12 3 2 15 15 C 1.39543 * 120.34553 * 299.97430 * 14 12 3 16 16 C 1.38086 * 120.10251 * 180.02562 * 15 14 12 17 17 C 1.38439 * 120.87618 * 0.02562 * 16 15 14 18 18 F 1.35102 * 119.86128 * 180.02562 * 17 16 15 19 19 C 1.39119 * 120.26685 * 359.97438 * 17 16 15 20 20 O 1.34916 * 133.31228 * 179.97438 * 19 17 16 21 21 C 1.34307 * 110.83598 * 180.02562 * 20 19 17 22 22 C 1.34307 * 110.05623 * 0.26247 * 21 20 19 23 23 C 1.40300 * 119.41038 * 0.02562 * 19 17 16 24 24 H 1.09004 * 109.46629 * 299.99895 * 1 2 3 25 25 H 1.09001 * 109.46738 * 59.99877 * 1 2 3 26 26 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46629 * 240.00105 * 2 1 3 28 28 H 1.09001 * 109.47477 * 120.00208 * 2 1 3 29 29 H 0.96996 * 120.00037 * 179.97438 * 7 6 4 30 30 H 1.07990 * 119.95164 * 0.04458 * 15 14 12 31 31 H 1.08001 * 119.56178 * 180.02562 * 16 15 14 32 32 H 1.08007 * 124.97184 * 180.02562 * 21 20 19 33 33 H 1.08008 * 126.89930 * 179.73836 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1054 2.0763 1.1759 5 1 2.5913 3.0405 1.1984 6 6 1.5685 1.5409 2.3412 7 7 1.0062 0.3537 2.3205 8 14 1.6467 2.5097 3.9365 9 1 0.4332 3.3562 4.0615 10 1 1.7147 1.5692 5.0838 11 1 2.8546 3.3735 3.9324 12 6 2.3820 1.9674 -1.1578 13 8 2.8673 3.0831 -1.1487 14 6 2.1922 1.2580 -2.4331 15 6 2.8219 0.0335 -2.6591 16 6 2.6407 -0.6277 -3.8578 17 6 1.8377 -0.0921 -4.8502 18 9 1.6743 -0.7567 -6.0151 19 6 1.1975 1.1271 -4.6524 20 8 0.3763 1.8761 -5.4172 21 6 0.0124 2.9964 -4.7721 22 6 0.5838 3.0346 -3.5572 23 6 1.3735 1.8088 -3.4388 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5139 0.8900 29 1 0.6320 -0.0199 3.1336 30 1 3.4517 -0.3981 -1.8954 31 1 3.1320 -1.5751 -4.0234 32 1 -0.6408 3.7574 -5.1732 33 1 0.4795 3.8130 -2.8157 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357755434.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:46 Heat of formation + Delta-G solvation = -37.472578 kcal Electronic energy + Delta-G solvation = -21553.492250 eV Core-core repulsion = 18074.955576 eV Total energy + Delta-G solvation = -3478.536674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.02136 -43.52200 -40.78321 -38.36858 -37.13823 -33.78204 -33.64479 -31.53971 -31.16035 -30.58711 -27.08444 -25.02903 -23.95160 -23.65941 -22.91733 -21.00325 -19.09280 -18.96445 -18.70184 -17.96021 -17.55970 -17.32328 -16.72732 -16.23554 -15.98894 -15.94365 -15.48576 -15.02842 -14.66715 -14.32537 -14.12457 -13.77794 -13.48526 -13.43469 -13.37205 -13.00865 -12.87025 -12.65567 -12.58350 -12.14694 -12.01102 -11.78073 -11.14335 -10.82188 -10.50515 -9.87331 -9.69133 -9.15168 -8.20266 -5.92049 -0.48518 0.05129 1.25658 1.36543 1.43290 1.54414 1.58169 1.86882 2.22077 2.42907 2.87277 3.02857 3.13771 3.48167 3.63985 3.81239 3.91589 4.11729 4.39887 4.50059 4.54847 4.65811 4.82736 4.85014 4.91295 4.98260 5.14704 5.19696 5.30870 5.37035 5.43853 5.61118 5.90016 5.95616 6.05184 6.50773 7.11663 7.41501 7.95572 8.61953 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.027082 B = 0.005634 C = 0.005224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.667655 B = 4968.859651 C = 5358.193973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.110 3.890 3 N -0.433 5.433 4 C -0.337 4.337 5 H 0.076 0.924 6 C 0.000 4.000 7 N -0.870 5.870 8 Si 0.993 3.007 9 H -0.275 1.275 10 H -0.266 1.266 11 H -0.277 1.277 12 C 0.463 3.537 13 O -0.637 6.637 14 C -0.073 4.073 15 C -0.087 4.087 16 C -0.109 4.109 17 C 0.113 3.887 18 F -0.130 7.130 19 C -0.002 4.002 20 O -0.190 6.190 21 C 0.042 3.958 22 C -0.236 4.236 23 C -0.095 4.095 24 H 0.065 0.935 25 H 0.008 0.992 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.274 0.726 30 H 0.157 0.843 31 H 0.194 0.806 32 H 0.267 0.733 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.548 -4.299 -10.133 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.011 4.011 3 N -0.148 5.148 4 C -0.465 4.465 5 H 0.094 0.906 6 C -0.202 4.202 7 N -0.509 5.509 8 Si 0.817 3.183 9 H -0.201 1.201 10 H -0.190 1.190 11 H -0.202 1.202 12 C 0.253 3.747 13 O -0.527 6.527 14 C -0.077 4.077 15 C -0.106 4.106 16 C -0.127 4.127 17 C 0.093 3.907 18 F -0.109 7.109 19 C -0.050 4.050 20 O -0.092 6.092 21 C -0.022 4.022 22 C -0.255 4.255 23 C -0.097 4.097 24 H 0.084 0.916 25 H 0.027 0.973 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.174 0.826 31 H 0.211 0.789 32 H 0.282 0.718 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.511 -4.054 -10.227 11.284 hybrid contribution -0.042 0.763 0.952 1.221 sum -2.553 -3.290 -9.275 10.167 Atomic orbital electron populations 1.22017 0.96286 1.00653 0.99562 1.22080 0.95294 0.81686 1.02079 1.44003 1.52981 1.12924 1.04922 1.19748 1.37066 1.03561 0.86106 0.90610 1.25975 0.95004 0.97395 1.01792 1.70220 1.36053 1.15498 1.29159 0.84932 0.78475 0.77939 0.76973 1.20078 1.19001 1.20194 1.18163 0.85847 0.86574 0.84126 1.90584 1.51986 1.22620 1.87474 1.19546 0.98473 0.96015 0.93674 1.21248 0.99110 0.92245 0.97946 1.21109 0.98493 1.02467 0.90634 1.16671 1.01240 0.88229 0.84557 1.91505 1.94341 1.79492 1.45546 1.19544 0.98957 0.95203 0.91265 1.84042 1.53732 1.29811 1.41587 1.24946 0.98771 0.87645 0.90814 1.22673 1.03365 0.99002 1.00505 1.19845 0.99863 0.96476 0.93522 0.91612 0.97266 0.92079 0.91561 0.87667 0.91511 0.82561 0.78921 0.71757 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 9.46 71.98 0.68 -4.77 16 2 C 0.11 4.89 5.27 86.38 0.46 5.35 16 3 N -0.43 -22.45 2.63 -639.54 -1.68 -24.13 16 4 C -0.34 -18.79 9.51 84.10 0.80 -17.99 16 5 H 0.08 4.57 7.18 -2.91 -0.02 4.55 16 6 C 0.00 0.01 5.25 84.95 0.45 0.45 16 7 N -0.87 -41.99 7.18 21.68 0.16 -41.83 16 8 Si 0.99 40.94 29.55 68.60 2.03 42.96 16 9 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.46 23.97 6.99 86.58 0.61 24.57 16 13 O -0.64 -37.99 16.70 -4.26 -0.07 -38.06 16 14 C -0.07 -3.07 4.96 -19.97 -0.10 -3.17 16 15 C -0.09 -2.82 7.55 22.55 0.17 -2.65 16 16 C -0.11 -2.82 9.97 22.28 0.22 -2.60 16 17 C 0.11 3.33 7.32 22.53 0.16 3.50 16 18 F -0.13 -3.58 17.26 44.97 0.78 -2.81 16 19 C 0.00 -0.06 7.38 22.98 0.17 0.11 16 20 O -0.19 -5.70 10.58 -8.64 -0.09 -5.79 16 21 C 0.04 1.07 11.97 66.92 0.80 1.87 16 22 C -0.24 -8.25 11.02 23.47 0.26 -8.00 16 23 C -0.10 -3.71 6.20 -20.03 -0.12 -3.84 16 24 H 0.07 3.16 5.86 -2.38 -0.01 3.15 16 25 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 26 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.07 2.52 4.23 -2.38 -0.01 2.51 16 28 H 0.11 4.95 5.89 -2.39 -0.01 4.94 16 29 H 0.27 12.35 8.31 -92.71 -0.77 11.58 16 30 H 0.16 4.63 7.39 -2.92 -0.02 4.61 16 31 H 0.19 3.23 8.06 -2.91 -0.02 3.20 16 32 H 0.27 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.15 5.49 8.06 -2.91 -0.02 5.47 16 Total: -1.00 -68.74 287.38 6.82 -61.91 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.16 Total: 14.90 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.55 Total: -7.16 kcal Atomic # 7 Polarization: -64.44 SS G_CDS: -1.53 Total: -65.97 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -0.16 Total: -43.85 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.81 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.96 kcal Total: -68.74 6.82 -61.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357755434.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.441 kcal (2) G-P(sol) polarization free energy of solvation -68.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds