Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 112.73837 * 2 1 4 4 C 1.53496 * 113.51871 * 130.79225 * 2 1 3 5 5 C 1.53749 * 83.25780 * 88.55361 * 4 2 1 6 6 N 1.47062 * 113.46880 * 229.25348 * 2 1 3 7 7 C 1.34773 * 136.05493 * 92.24316 * 6 2 1 8 8 O 1.21551 * 120.00181 * 5.58059 * 7 6 2 9 9 C 1.47865 * 120.00058 * 185.57407 * 7 6 2 10 10 C 1.39672 * 120.09788 * 6.72122 * 9 7 6 11 11 C 1.38039 * 120.03377 * 180.02562 * 10 9 7 12 12 C 1.38177 * 120.25127 * 0.02562 * 11 10 9 13 13 C 1.39189 * 120.19726 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.01965 * 179.97438 * 13 12 11 15 15 C 1.76202 * 99.99603 * 274.39738 * 14 13 12 16 16 H 1.07998 * 120.00323 * 354.87520 * 15 14 13 17 17 C 1.38729 * 119.99943 * 174.86835 * 15 14 13 18 18 N 1.31617 * 120.00352 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99734 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47337 * 89.99468 * 19 17 15 21 21 H 1.48503 * 109.47092 * 209.99910 * 19 17 15 22 22 H 1.48503 * 109.47140 * 329.99440 * 19 17 15 23 23 C 1.38876 * 119.95839 * 359.97438 * 13 12 11 24 24 H 1.09000 * 109.46702 * 190.74289 * 1 2 3 25 25 H 1.09006 * 109.47215 * 310.74216 * 1 2 3 26 26 H 1.08998 * 109.46892 * 70.74660 * 1 2 3 27 27 H 1.09001 * 114.20344 * 202.30997 * 4 2 1 28 28 H 1.09000 * 114.20938 * 335.13287 * 4 2 1 29 29 H 1.09000 * 113.46718 * 271.50166 * 5 4 2 30 30 H 1.09000 * 113.55670 * 140.98407 * 5 4 2 31 31 H 1.07997 * 119.98431 * 359.97438 * 10 9 7 32 32 H 1.08011 * 119.87689 * 179.71909 * 11 10 9 33 33 H 1.07990 * 119.90666 * 179.97438 * 12 11 10 34 34 H 0.97001 * 120.00209 * 180.02562 * 18 17 15 35 35 H 1.07991 * 120.11990 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9514 1.0053 0.0000 4 6 2.1426 -0.9195 1.0656 5 6 2.0352 -1.9770 -0.0453 6 7 2.1157 -0.8805 -1.0220 7 6 2.5358 -0.7439 -2.2953 8 8 2.5565 0.3552 -2.8139 9 6 2.9715 -1.9312 -3.0615 10 6 2.8177 -3.2094 -2.5199 11 6 3.2254 -4.3168 -3.2361 12 6 3.7871 -4.1671 -4.4896 13 6 3.9460 -2.8979 -5.0385 14 16 4.6635 -2.7123 -6.6371 15 6 6.3719 -2.6983 -6.2059 16 1 6.6667 -2.7093 -5.1670 17 6 7.3382 -2.6734 -7.2009 18 7 8.6144 -2.6634 -6.8789 19 14 6.8282 -2.6539 -8.9978 20 1 6.6771 -1.2489 -9.4543 21 1 7.8674 -3.3307 -9.8147 22 1 5.5347 -3.3666 -9.1530 23 6 3.5388 -1.7779 -4.3254 24 1 -0.3633 -1.0097 0.1916 25 1 -0.3634 0.6707 0.7786 26 1 -0.3633 0.3389 -0.9702 27 1 3.1643 -0.6617 1.3445 28 1 1.4939 -1.1059 1.9215 29 1 1.0784 -2.4990 -0.0567 30 1 2.8869 -2.6562 -0.0840 31 1 2.3803 -3.3314 -1.5400 32 1 3.1094 -5.3038 -2.8130 33 1 4.1045 -5.0372 -5.0449 34 1 9.2900 -2.6456 -7.5746 35 1 3.6613 -0.7920 -4.7485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455483416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = 30.854261 kcal Electronic energy + Delta-G solvation = -18416.561026 eV Core-core repulsion = 15507.200402 eV Total energy + Delta-G solvation = -2909.360624 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82654 -38.72352 -37.37709 -32.49907 -31.85944 -30.67038 -29.90640 -29.04588 -25.68422 -24.71623 -23.92323 -22.31812 -21.30353 -18.99452 -17.95947 -17.03638 -16.74531 -16.12916 -15.61374 -15.09192 -14.76147 -14.46107 -14.40568 -13.69254 -13.45747 -12.99051 -12.94278 -12.87236 -12.70361 -12.36042 -12.24584 -11.84082 -11.59112 -11.34367 -11.18372 -11.08871 -10.75365 -10.49896 -9.93873 -9.73846 -9.23760 -9.04394 -8.88541 -8.59992 -8.14436 -7.12665 -6.32625 -4.08141 1.12261 1.59729 2.64746 2.91523 3.02601 3.26953 3.39568 3.49501 3.97900 4.06228 4.26670 4.40591 4.63372 4.80135 4.86618 4.90288 4.95556 5.06012 5.12588 5.14317 5.24186 5.31199 5.40995 5.56944 5.64358 5.66925 5.74636 5.81284 5.96290 6.05988 6.19433 6.54501 6.59153 6.84083 7.13009 7.64740 7.91374 8.23003 8.44291 9.10980 10.76746 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032703 B = 0.004046 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.981208 B = 6919.184020 C = 7103.657572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.087 0.913 4 C -0.151 4.151 5 C 0.092 3.908 6 N -0.644 5.644 7 C 0.593 3.407 8 O -0.534 6.534 9 C -0.149 4.149 10 C -0.095 4.095 11 C -0.141 4.141 12 C -0.051 4.051 13 C -0.085 4.085 14 S -0.113 6.113 15 C -0.509 4.509 16 H 0.091 0.909 17 C 0.096 3.904 18 N -0.877 5.877 19 Si 0.854 3.146 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.235 1.235 23 C -0.018 4.018 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.272 0.728 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 -1.388 15.692 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.105 0.895 4 C -0.189 4.189 5 C -0.031 4.031 6 N -0.380 5.380 7 C 0.385 3.615 8 O -0.411 6.411 9 C -0.153 4.153 10 C -0.114 4.114 11 C -0.161 4.161 12 C -0.072 4.072 13 C -0.196 4.196 14 S 0.121 5.879 15 C -0.656 4.656 16 H 0.109 0.891 17 C -0.113 4.113 18 N -0.513 5.513 19 Si 0.678 3.322 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.159 1.159 23 C -0.039 4.039 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.583 -0.663 14.003 20.961 hybrid contribution 0.659 -0.194 0.401 0.795 sum -14.924 -0.857 14.404 20.759 Atomic orbital electron populations 1.21981 0.93756 1.02588 1.02997 1.22416 0.94129 0.96811 0.84258 0.89499 1.23515 1.02628 0.96520 0.96255 1.23210 1.02317 0.92318 0.85272 1.49622 1.62853 1.14139 1.11399 1.17968 0.76335 0.88709 0.78494 1.90773 1.55031 1.27287 1.68001 1.19763 1.06529 0.92597 0.96447 1.21663 0.98406 0.91831 0.99485 1.21082 1.01277 0.98368 0.95379 1.21953 0.93517 0.97333 0.94367 1.22154 1.01872 0.94217 1.01342 1.83045 1.06442 1.95694 1.02708 1.22255 0.86809 1.58820 0.97691 0.89112 1.24727 0.94067 0.93275 0.99244 1.69922 0.99519 1.47728 1.34144 0.86786 0.80740 0.80042 0.84608 1.19117 1.19720 1.15945 1.21844 0.91359 0.99540 0.91188 0.91934 0.90906 0.91677 0.88531 0.89144 0.89511 0.89615 0.85285 0.85669 0.84927 0.91814 0.84233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.79 37.16 0.36 -0.81 16 2 C 0.13 1.21 4.94 -72.40 -0.36 0.85 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.15 -1.00 8.07 -26.09 -0.21 -1.21 16 5 C 0.09 0.75 5.76 -8.39 -0.05 0.70 16 6 N -0.64 -8.18 3.47 -178.43 -0.62 -8.80 16 7 C 0.59 10.29 8.01 -12.32 -0.10 10.20 16 8 O -0.53 -11.21 17.14 5.32 0.09 -11.12 16 9 C -0.15 -2.61 5.87 -104.99 -0.62 -3.23 16 10 C -0.10 -1.36 9.14 -39.12 -0.36 -1.72 16 11 C -0.14 -2.07 10.02 -39.68 -0.40 -2.47 16 12 C -0.05 -0.92 9.79 -39.25 -0.38 -1.31 16 13 C -0.09 -1.83 5.45 -38.99 -0.21 -2.04 16 14 S -0.11 -2.79 19.38 -107.50 -2.08 -4.87 16 15 C -0.51 -14.76 10.01 30.91 0.31 -14.45 16 16 H 0.09 2.86 8.02 -52.49 -0.42 2.44 16 17 C 0.10 2.78 5.50 -17.46 -0.10 2.68 16 18 N -0.88 -26.47 13.97 55.49 0.77 -25.69 16 19 Si 0.85 21.07 27.73 -169.99 -4.71 16.35 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.24 -5.61 6.74 56.52 0.38 -5.23 16 23 C -0.02 -0.36 9.34 -38.92 -0.36 -0.73 16 24 H 0.06 0.39 7.05 -51.93 -0.37 0.03 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.09 0.37 8.11 -51.93 -0.42 -0.05 16 29 H 0.09 0.54 7.32 -51.93 -0.38 0.16 16 30 H 0.09 0.68 6.74 -51.93 -0.35 0.33 16 31 H 0.13 1.38 4.17 -52.49 -0.22 1.16 16 32 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.13 2.30 8.06 -52.49 -0.42 1.88 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.14 3.04 7.66 -52.49 -0.40 2.64 16 LS Contribution 310.41 15.07 4.68 4.68 Total: -1.00 -34.13 310.41 -8.60 -42.73 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.25 Total: 0.26 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.47 Total: -13.53 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.16 Total: -34.49 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.71 Total: 16.35 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.08 Total: -4.87 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.13 -8.60 -42.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455483416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.579 kcal (2) G-P(sol) polarization free energy of solvation -34.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds