Wall clock time and date at job start Mon Mar 30 2020 02:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 112.73837 * 2 1 4 4 C 1.53496 * 113.51871 * 130.79225 * 2 1 3 5 5 C 1.53749 * 83.25780 * 88.55361 * 4 2 1 6 6 N 1.47062 * 113.46880 * 229.25348 * 2 1 3 7 7 C 1.34773 * 136.05493 * 92.24316 * 6 2 1 8 8 O 1.21551 * 120.00181 * 5.58059 * 7 6 2 9 9 C 1.47865 * 120.00058 * 185.57407 * 7 6 2 10 10 C 1.39672 * 120.09788 * 6.72122 * 9 7 6 11 11 C 1.38039 * 120.03377 * 180.02562 * 10 9 7 12 12 C 1.38177 * 120.25127 * 0.02562 * 11 10 9 13 13 C 1.39189 * 120.19726 * 0.02562 * 12 11 10 14 14 S 1.76201 * 120.01965 * 179.97438 * 13 12 11 15 15 C 1.76202 * 99.99603 * 274.39738 * 14 13 12 16 16 H 1.07998 * 120.00323 * 354.87520 * 15 14 13 17 17 C 1.38729 * 119.99943 * 174.86835 * 15 14 13 18 18 N 1.31617 * 120.00352 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99734 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47337 * 89.99468 * 19 17 15 21 21 H 1.48503 * 109.47092 * 209.99910 * 19 17 15 22 22 H 1.48503 * 109.47140 * 329.99440 * 19 17 15 23 23 C 1.38876 * 119.95839 * 359.97438 * 13 12 11 24 24 H 1.09000 * 109.46702 * 190.74289 * 1 2 3 25 25 H 1.09006 * 109.47215 * 310.74216 * 1 2 3 26 26 H 1.08998 * 109.46892 * 70.74660 * 1 2 3 27 27 H 1.09001 * 114.20344 * 202.30997 * 4 2 1 28 28 H 1.09000 * 114.20938 * 335.13287 * 4 2 1 29 29 H 1.09000 * 113.46718 * 271.50166 * 5 4 2 30 30 H 1.09000 * 113.55670 * 140.98407 * 5 4 2 31 31 H 1.07997 * 119.98431 * 359.97438 * 10 9 7 32 32 H 1.08011 * 119.87689 * 179.71909 * 11 10 9 33 33 H 1.07990 * 119.90666 * 179.97438 * 12 11 10 34 34 H 0.97001 * 120.00209 * 180.02562 * 18 17 15 35 35 H 1.07991 * 120.11990 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9514 1.0053 0.0000 4 6 2.1426 -0.9195 1.0656 5 6 2.0352 -1.9770 -0.0453 6 7 2.1157 -0.8805 -1.0220 7 6 2.5358 -0.7439 -2.2953 8 8 2.5565 0.3552 -2.8139 9 6 2.9715 -1.9312 -3.0615 10 6 2.8177 -3.2094 -2.5199 11 6 3.2254 -4.3168 -3.2361 12 6 3.7871 -4.1671 -4.4896 13 6 3.9460 -2.8979 -5.0385 14 16 4.6635 -2.7123 -6.6371 15 6 6.3719 -2.6983 -6.2059 16 1 6.6667 -2.7093 -5.1670 17 6 7.3382 -2.6734 -7.2009 18 7 8.6144 -2.6634 -6.8789 19 14 6.8282 -2.6539 -8.9978 20 1 6.6771 -1.2489 -9.4543 21 1 7.8674 -3.3307 -9.8147 22 1 5.5347 -3.3666 -9.1530 23 6 3.5388 -1.7779 -4.3254 24 1 -0.3633 -1.0097 0.1916 25 1 -0.3634 0.6707 0.7786 26 1 -0.3633 0.3389 -0.9702 27 1 3.1643 -0.6617 1.3445 28 1 1.4939 -1.1059 1.9215 29 1 1.0784 -2.4990 -0.0567 30 1 2.8869 -2.6562 -0.0840 31 1 2.3803 -3.3314 -1.5400 32 1 3.1094 -5.3038 -2.8130 33 1 4.1045 -5.0372 -5.0449 34 1 9.2900 -2.6456 -7.5746 35 1 3.6613 -0.7920 -4.7485 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455483416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:59 Heat of formation + Delta-G solvation = 8.079633 kcal Electronic energy + Delta-G solvation = -18417.548608 eV Core-core repulsion = 15507.200402 eV Total energy + Delta-G solvation = -2910.348206 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.81881 -39.93040 -38.70382 -34.74067 -33.09020 -32.05804 -30.93667 -29.80746 -27.94619 -25.43561 -25.14236 -23.66274 -22.40588 -20.33617 -19.56087 -18.41108 -17.89477 -17.15430 -17.05134 -16.87663 -16.24532 -15.79498 -15.57668 -15.03367 -14.83323 -14.67863 -14.08757 -13.82048 -13.66052 -13.49092 -13.25484 -13.10195 -13.08710 -12.89502 -12.69479 -12.35015 -12.16871 -11.87818 -11.34134 -11.26256 -11.13094 -10.87877 -10.13425 -9.81731 -9.70506 -9.17709 -8.55548 -6.30589 -0.25710 0.14911 1.03974 1.29921 1.42717 1.57679 1.71504 1.75683 2.20497 2.55221 2.82189 2.92315 3.27590 3.43028 3.84406 3.90547 4.01631 4.13277 4.22375 4.22908 4.35807 4.40266 4.52769 4.57581 4.72171 4.83400 4.92591 5.00582 5.04427 5.11797 5.21990 5.24700 5.37787 5.39604 5.66732 5.79165 6.07401 6.59091 6.86320 6.98931 8.57975 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032703 B = 0.004046 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.981208 B = 6919.184020 C = 7103.657572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.112 3.888 3 H 0.065 0.935 4 C -0.128 4.128 5 C 0.082 3.918 6 N -0.647 5.647 7 C 0.581 3.419 8 O -0.592 6.592 9 C -0.155 4.155 10 C -0.070 4.070 11 C -0.121 4.121 12 C -0.060 4.060 13 C -0.117 4.117 14 S -0.116 6.116 15 C -0.525 4.525 16 H 0.045 0.955 17 C 0.043 3.957 18 N -0.919 5.919 19 Si 0.918 3.082 20 H -0.264 1.264 21 H -0.255 1.255 22 H -0.223 1.223 23 C -0.044 4.044 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.178 0.822 32 H 0.179 0.821 33 H 0.139 0.861 34 H 0.279 0.721 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 -3.782 18.275 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 H 0.083 0.917 4 C -0.165 4.165 5 C -0.039 4.039 6 N -0.381 5.381 7 C 0.373 3.627 8 O -0.475 6.475 9 C -0.160 4.160 10 C -0.088 4.088 11 C -0.140 4.140 12 C -0.080 4.080 13 C -0.228 4.228 14 S 0.117 5.883 15 C -0.672 4.672 16 H 0.064 0.936 17 C -0.162 4.162 18 N -0.557 5.557 19 Si 0.739 3.261 20 H -0.189 1.189 21 H -0.179 1.179 22 H -0.146 1.146 23 C -0.066 4.066 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.149 0.851 29 H 0.140 0.860 30 H 0.113 0.887 31 H 0.195 0.805 32 H 0.197 0.803 33 H 0.157 0.843 34 H 0.088 0.912 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.085 -3.088 16.660 24.782 hybrid contribution 1.336 0.580 -0.087 1.459 sum -16.749 -2.508 16.573 23.696 Atomic orbital electron populations 1.21959 0.91800 1.04518 1.02311 1.22839 0.95669 0.96288 0.84284 0.91670 1.23459 1.02990 0.93833 0.96244 1.23695 1.04526 0.92039 0.83630 1.49847 1.60817 1.17377 1.10060 1.18020 0.76796 0.87786 0.80083 1.90729 1.57833 1.29058 1.69843 1.19939 1.06090 0.94667 0.95332 1.22199 0.95965 0.89853 1.00799 1.21610 0.98339 1.00833 0.93259 1.22125 0.93945 0.95839 0.96124 1.22039 1.04328 0.96170 1.00288 1.82606 1.03218 1.96106 1.06324 1.22363 0.90102 1.58883 0.95858 0.93647 1.25699 0.93924 0.92543 1.04032 1.70024 1.00828 1.48765 1.36045 0.85822 0.81320 0.80362 0.78626 1.18907 1.17851 1.14598 1.21616 0.93771 0.98025 0.93213 0.89587 0.88611 0.94432 0.88954 0.85096 0.85990 0.88670 0.80497 0.80334 0.84344 0.91191 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.79 71.98 0.70 -1.10 16 2 C 0.11 1.89 4.94 41.79 0.21 2.10 16 3 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.13 -1.12 8.07 31.01 0.25 -0.87 16 5 C 0.08 0.92 5.76 83.26 0.48 1.40 16 6 N -0.65 -15.26 3.47 -836.69 -2.90 -18.16 16 7 C 0.58 20.57 8.01 86.79 0.69 21.26 16 8 O -0.59 -26.70 17.14 -3.87 -0.07 -26.76 16 9 C -0.16 -5.47 5.87 -20.11 -0.12 -5.58 16 10 C -0.07 -1.76 9.14 22.57 0.21 -1.55 16 11 C -0.12 -3.05 10.02 22.21 0.22 -2.83 16 12 C -0.06 -2.11 9.79 22.48 0.22 -1.89 16 13 C -0.12 -5.21 5.45 22.65 0.12 -5.09 16 14 S -0.12 -5.98 19.38 -56.49 -1.09 -7.08 16 15 C -0.53 -32.10 10.01 67.94 0.68 -31.42 16 16 H 0.05 3.07 8.02 -2.91 -0.02 3.05 16 17 C 0.04 2.59 5.50 84.84 0.47 3.06 16 18 N -0.92 -57.47 13.97 21.63 0.30 -57.17 16 19 Si 0.92 44.33 27.73 68.60 1.90 46.24 16 20 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 21 H -0.25 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.22 -10.21 6.74 99.48 0.67 -9.54 16 23 C -0.04 -1.94 9.34 22.70 0.21 -1.73 16 24 H 0.09 0.65 7.05 -2.39 -0.02 0.63 16 25 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.13 0.22 8.11 -2.39 -0.02 0.20 16 29 H 0.12 0.64 7.32 -2.39 -0.02 0.62 16 30 H 0.10 0.95 6.74 -2.39 -0.02 0.94 16 31 H 0.18 2.68 4.17 -2.91 -0.01 2.67 16 32 H 0.18 2.72 8.06 -2.90 -0.02 2.69 16 33 H 0.14 4.66 8.06 -2.92 -0.02 4.64 16 34 H 0.28 15.96 8.31 -92.71 -0.77 15.19 16 35 H 0.11 5.23 7.66 -2.92 -0.02 5.21 16 Total: -1.00 -83.40 310.41 3.55 -79.85 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: 1.06 Total: 7.33 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: 4.35 Total: -24.24 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -2.60 Total: -75.33 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.07 Total: -26.76 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.24 kcal Atomic # 16 Polarization: -5.98 SS G_CDS: -1.09 Total: -7.08 kcal Total: -83.40 3.55 -79.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455483416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.927 kcal (2) G-P(sol) polarization free energy of solvation -83.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds