Wall clock time and date at job start Mon Mar 30 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 112.77942 * 2 1 4 4 C 1.53749 * 113.46771 * 229.09648 * 2 1 3 5 5 C 1.53495 * 83.26092 * 271.50155 * 4 2 1 6 6 N 1.47065 * 87.98382 * 333.76245 * 5 4 2 7 7 C 1.34777 * 136.05951 * 207.08544 * 6 5 4 8 8 O 1.21544 * 120.00459 * 183.13262 * 7 6 5 9 9 C 1.47867 * 119.99604 * 2.85291 * 7 6 5 10 10 C 1.39671 * 120.10043 * 352.07653 * 9 7 6 11 11 C 1.38048 * 120.03469 * 179.78799 * 10 9 7 12 12 C 1.38174 * 120.24296 * 0.47182 * 11 10 9 13 13 C 1.39181 * 120.20513 * 359.78350 * 12 11 10 14 14 S 1.76199 * 120.02264 * 180.02562 * 13 12 11 15 15 C 1.76207 * 99.99903 * 274.96842 * 14 13 12 16 16 H 1.07995 * 119.99664 * 354.99663 * 15 14 13 17 17 C 1.38726 * 119.99968 * 174.99988 * 15 14 13 18 18 N 1.31620 * 119.99809 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00042 * 359.97438 * 17 15 14 20 20 H 1.48489 * 109.46943 * 90.00283 * 19 17 15 21 21 H 1.48493 * 109.46955 * 210.00426 * 19 17 15 22 22 H 1.48497 * 109.47012 * 330.00213 * 19 17 15 23 23 C 1.38875 * 119.95689 * 359.97438 * 13 12 11 24 24 H 1.08999 * 109.47263 * 289.22042 * 1 2 3 25 25 H 1.08995 * 109.47406 * 49.22082 * 1 2 3 26 26 H 1.08999 * 109.47043 * 169.22019 * 1 2 3 27 27 H 1.09003 * 114.39703 * 157.93664 * 4 2 1 28 28 H 1.09002 * 114.08414 * 25.04565 * 4 2 1 29 29 H 1.08992 * 113.46838 * 218.97990 * 5 4 2 30 30 H 1.09005 * 113.46762 * 88.54026 * 5 4 2 31 31 H 1.07998 * 119.98509 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.87595 * 180.25497 * 11 10 9 33 33 H 1.08005 * 119.89765 * 179.76863 * 12 11 10 34 34 H 0.97002 * 119.99778 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.11784 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0050 0.0000 4 6 2.1422 -0.9235 -1.0659 5 6 2.0339 -1.9774 0.0447 6 7 2.1157 -0.8811 1.0215 7 6 2.5367 -0.7450 2.2946 8 8 2.4173 0.3225 2.8634 9 6 3.1381 -1.8962 3.0014 10 6 3.1216 -3.1641 2.4158 11 6 3.6874 -4.2370 3.0749 12 6 4.2630 -4.0646 4.3191 13 6 4.2803 -2.8066 4.9144 14 16 5.0162 -2.5920 6.5009 15 6 3.6572 -3.0354 7.5311 16 1 2.6943 -3.2501 7.0919 17 6 3.8243 -3.1086 8.9063 18 7 2.8092 -3.4403 9.6758 19 14 5.4901 -2.7379 9.6659 20 1 5.5787 -1.2897 9.9820 21 1 5.6523 -3.5275 10.9130 22 1 6.5636 -3.1017 8.7065 23 6 3.7180 -1.7204 4.2566 24 1 -0.3634 0.3383 0.9704 25 1 -0.3634 0.6712 -0.7781 26 1 -0.3633 -1.0095 -0.1922 27 1 3.1654 -0.6722 -1.3453 28 1 1.4924 -1.1073 -1.9215 29 1 2.8851 -2.6571 0.0827 30 1 1.0767 -2.4988 0.0565 31 1 2.6695 -3.3045 1.4451 32 1 3.6769 -5.2155 2.6179 33 1 4.7007 -4.9086 4.8315 34 1 2.9259 -3.4912 10.6374 35 1 3.7296 -0.7431 4.7163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455483441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:03 Heat of formation + Delta-G solvation = 33.445452 kcal Electronic energy + Delta-G solvation = -18412.318413 eV Core-core repulsion = 15503.070151 eV Total energy + Delta-G solvation = -2909.248262 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84032 -38.71894 -37.38227 -32.49421 -31.86879 -30.67235 -29.88410 -29.06963 -25.68052 -24.72836 -23.92605 -22.32355 -21.30601 -19.00852 -17.97300 -17.01303 -16.84045 -16.06424 -15.61558 -15.08761 -14.74217 -14.45481 -14.43197 -13.69986 -13.46320 -13.00374 -12.91773 -12.86746 -12.68717 -12.39995 -12.25120 -11.82795 -11.56031 -11.35193 -11.16862 -11.08482 -10.72021 -10.50254 -9.93800 -9.73874 -9.21811 -9.03925 -8.89268 -8.59731 -8.14795 -7.12396 -6.32124 -4.07702 1.12808 1.59882 2.65048 2.88203 3.05477 3.27148 3.39579 3.50230 3.96149 4.05834 4.26903 4.39871 4.65756 4.76442 4.86101 4.90168 4.93529 5.06477 5.11189 5.15207 5.27464 5.31129 5.38708 5.57753 5.64997 5.67683 5.75151 5.81584 5.97625 6.05812 6.19663 6.54679 6.59422 6.84294 7.13283 7.64136 7.91926 8.23239 8.45132 9.11406 10.77290 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032809 B = 0.004064 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.220778 B = 6887.499785 C = 7185.215854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.128 3.872 3 H 0.086 0.914 4 C -0.152 4.152 5 C 0.090 3.910 6 N -0.644 5.644 7 C 0.592 3.408 8 O -0.533 6.533 9 C -0.147 4.147 10 C -0.100 4.100 11 C -0.141 4.141 12 C -0.051 4.051 13 C -0.085 4.085 14 S -0.113 6.113 15 C -0.509 4.509 16 H 0.091 0.909 17 C 0.096 3.904 18 N -0.877 5.877 19 Si 0.854 3.146 20 H -0.266 1.266 21 H -0.272 1.272 22 H -0.236 1.236 23 C -0.018 4.018 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.272 0.728 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 0.594 -22.528 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.105 0.895 4 C -0.189 4.189 5 C -0.033 4.033 6 N -0.380 5.380 7 C 0.384 3.616 8 O -0.410 6.410 9 C -0.152 4.152 10 C -0.118 4.118 11 C -0.161 4.161 12 C -0.072 4.072 13 C -0.196 4.196 14 S 0.121 5.879 15 C -0.656 4.656 16 H 0.109 0.891 17 C -0.113 4.113 18 N -0.513 5.513 19 Si 0.678 3.322 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.160 1.160 23 C -0.040 4.040 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.150 0.850 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.041 1.508 -21.418 21.471 hybrid contribution -0.828 -0.411 0.314 0.976 sum -0.869 1.097 -21.104 21.150 Atomic orbital electron populations 1.21984 0.93753 1.02606 1.03111 1.22473 0.94250 0.96642 0.84145 0.89542 1.23517 1.02532 0.96583 0.96299 1.23223 1.02443 0.92327 0.85326 1.49647 1.62702 1.14133 1.11523 1.17979 0.77198 0.88050 0.78364 1.90778 1.56808 1.28825 1.64620 1.19746 1.05508 0.93191 0.96768 1.21791 0.98234 0.92079 0.99687 1.21086 1.00573 0.98569 0.95853 1.21952 0.94623 0.96928 0.93707 1.22149 1.02214 0.94621 1.00580 1.83030 1.21789 1.89421 0.93655 1.22257 0.96013 1.54166 0.93128 0.89103 1.24729 0.97265 0.93373 0.95952 1.69926 1.30635 1.45552 1.05195 0.86782 0.84912 0.79747 0.80713 1.19120 1.19722 1.15956 1.21839 0.90997 0.99663 0.91491 0.91530 0.90948 0.91928 0.88587 0.89141 0.89400 0.89439 0.84980 0.85674 0.84935 0.91818 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.79 37.16 0.36 -0.90 16 2 C 0.13 1.21 4.96 -72.26 -0.36 0.85 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.15 -0.94 8.08 -26.09 -0.21 -1.15 16 5 C 0.09 0.71 6.11 -8.51 -0.05 0.66 16 6 N -0.64 -8.11 3.49 -178.41 -0.62 -8.73 16 7 C 0.59 10.27 8.00 -12.32 -0.10 10.17 16 8 O -0.53 -11.25 17.15 5.33 0.09 -11.16 16 9 C -0.15 -2.59 5.87 -104.99 -0.62 -3.21 16 10 C -0.10 -1.42 9.18 -39.12 -0.36 -1.78 16 11 C -0.14 -2.07 10.02 -39.67 -0.40 -2.46 16 12 C -0.05 -0.93 9.79 -39.25 -0.38 -1.31 16 13 C -0.08 -1.82 5.45 -39.00 -0.21 -2.03 16 14 S -0.11 -2.79 19.38 -107.50 -2.08 -4.88 16 15 C -0.51 -14.81 10.01 30.91 0.31 -14.50 16 16 H 0.09 2.88 8.02 -52.49 -0.42 2.46 16 17 C 0.10 2.78 5.50 -17.46 -0.10 2.69 16 18 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 19 Si 0.85 21.10 27.74 -169.99 -4.71 16.38 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.24 -5.62 6.74 56.52 0.38 -5.24 16 23 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.43 7.05 -51.93 -0.37 0.07 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 0.35 8.11 -51.93 -0.42 -0.07 16 29 H 0.09 0.63 6.16 -51.93 -0.32 0.31 16 30 H 0.09 0.57 7.32 -51.93 -0.38 0.19 16 31 H 0.13 1.40 3.86 -52.49 -0.20 1.20 16 32 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.13 2.31 8.06 -52.48 -0.42 1.89 16 34 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.14 3.04 7.67 -52.49 -0.40 2.63 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -34.32 309.94 -8.56 -42.89 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.21 Total: 0.33 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.48 Total: -13.72 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.15 Total: -34.52 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.38 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.08 Total: -4.88 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.32 -8.56 -42.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455483441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.334 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds