Wall clock time and date at job start Mon Mar 30 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 112.77942 * 2 1 4 4 C 1.53749 * 113.46771 * 229.09648 * 2 1 3 5 5 C 1.53495 * 83.26092 * 271.50155 * 4 2 1 6 6 N 1.47065 * 87.98382 * 333.76245 * 5 4 2 7 7 C 1.34777 * 136.05951 * 207.08544 * 6 5 4 8 8 O 1.21544 * 120.00459 * 183.13262 * 7 6 5 9 9 C 1.47867 * 119.99604 * 2.85291 * 7 6 5 10 10 C 1.39671 * 120.10043 * 352.07653 * 9 7 6 11 11 C 1.38048 * 120.03469 * 179.78799 * 10 9 7 12 12 C 1.38174 * 120.24296 * 0.47182 * 11 10 9 13 13 C 1.39181 * 120.20513 * 359.78350 * 12 11 10 14 14 S 1.76199 * 120.02264 * 180.02562 * 13 12 11 15 15 C 1.76207 * 99.99903 * 274.96842 * 14 13 12 16 16 H 1.07995 * 119.99664 * 354.99663 * 15 14 13 17 17 C 1.38726 * 119.99968 * 174.99988 * 15 14 13 18 18 N 1.31620 * 119.99809 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00042 * 359.97438 * 17 15 14 20 20 H 1.48489 * 109.46943 * 90.00283 * 19 17 15 21 21 H 1.48493 * 109.46955 * 210.00426 * 19 17 15 22 22 H 1.48497 * 109.47012 * 330.00213 * 19 17 15 23 23 C 1.38875 * 119.95689 * 359.97438 * 13 12 11 24 24 H 1.08999 * 109.47263 * 289.22042 * 1 2 3 25 25 H 1.08995 * 109.47406 * 49.22082 * 1 2 3 26 26 H 1.08999 * 109.47043 * 169.22019 * 1 2 3 27 27 H 1.09003 * 114.39703 * 157.93664 * 4 2 1 28 28 H 1.09002 * 114.08414 * 25.04565 * 4 2 1 29 29 H 1.08992 * 113.46838 * 218.97990 * 5 4 2 30 30 H 1.09005 * 113.46762 * 88.54026 * 5 4 2 31 31 H 1.07998 * 119.98509 * 0.02562 * 10 9 7 32 32 H 1.08001 * 119.87595 * 180.25497 * 11 10 9 33 33 H 1.08005 * 119.89765 * 179.76863 * 12 11 10 34 34 H 0.97002 * 119.99778 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.11784 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9520 1.0050 0.0000 4 6 2.1422 -0.9235 -1.0659 5 6 2.0339 -1.9774 0.0447 6 7 2.1157 -0.8811 1.0215 7 6 2.5367 -0.7450 2.2946 8 8 2.4173 0.3225 2.8634 9 6 3.1381 -1.8962 3.0014 10 6 3.1216 -3.1641 2.4158 11 6 3.6874 -4.2370 3.0749 12 6 4.2630 -4.0646 4.3191 13 6 4.2803 -2.8066 4.9144 14 16 5.0162 -2.5920 6.5009 15 6 3.6572 -3.0354 7.5311 16 1 2.6943 -3.2501 7.0919 17 6 3.8243 -3.1086 8.9063 18 7 2.8092 -3.4403 9.6758 19 14 5.4901 -2.7379 9.6659 20 1 5.5787 -1.2897 9.9820 21 1 5.6523 -3.5275 10.9130 22 1 6.5636 -3.1017 8.7065 23 6 3.7180 -1.7204 4.2566 24 1 -0.3634 0.3383 0.9704 25 1 -0.3634 0.6712 -0.7781 26 1 -0.3633 -1.0095 -0.1922 27 1 3.1654 -0.6722 -1.3453 28 1 1.4924 -1.1073 -1.9215 29 1 2.8851 -2.6571 0.0827 30 1 1.0767 -2.4988 0.0565 31 1 2.6695 -3.3045 1.4451 32 1 3.6769 -5.2155 2.6179 33 1 4.7007 -4.9086 4.8315 34 1 2.9259 -3.4912 10.6374 35 1 3.7296 -0.7431 4.7163 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001455483441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:02 Heat of formation + Delta-G solvation = 10.411845 kcal Electronic energy + Delta-G solvation = -18413.317225 eV Core-core repulsion = 15503.070151 eV Total energy + Delta-G solvation = -2910.247074 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 277.088 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.82523 -39.92242 -38.71013 -34.74269 -33.10008 -32.06073 -30.93115 -29.82640 -27.94963 -25.45054 -25.14067 -23.66104 -22.40274 -20.33781 -19.57700 -18.40278 -17.95653 -17.15724 -17.00413 -16.87383 -16.25196 -15.79335 -15.55534 -15.02852 -14.86994 -14.69112 -14.02765 -13.86963 -13.67635 -13.49391 -13.32653 -13.09888 -13.06170 -12.84919 -12.68708 -12.37438 -12.13327 -11.87769 -11.33859 -11.25120 -11.15733 -10.82265 -10.13505 -9.82042 -9.71050 -9.17638 -8.55704 -6.30810 -0.25281 0.14887 1.03951 1.29882 1.42630 1.60221 1.63370 1.82071 2.20410 2.54490 2.81957 2.92334 3.27358 3.44546 3.84355 3.90115 4.00525 4.11864 4.21916 4.23491 4.36037 4.41538 4.53969 4.58108 4.70332 4.83319 4.91953 5.00384 5.05025 5.11530 5.22010 5.25321 5.37609 5.39482 5.66515 5.79357 6.07263 6.59184 6.86049 6.99347 8.57939 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.032809 B = 0.004064 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.220778 B = 6887.499785 C = 7185.215854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.111 3.889 3 H 0.069 0.931 4 C -0.123 4.123 5 C 0.079 3.921 6 N -0.646 5.646 7 C 0.581 3.419 8 O -0.593 6.593 9 C -0.154 4.154 10 C -0.075 4.075 11 C -0.121 4.121 12 C -0.060 4.060 13 C -0.117 4.117 14 S -0.115 6.115 15 C -0.526 4.526 16 H 0.044 0.956 17 C 0.043 3.957 18 N -0.920 5.920 19 Si 0.919 3.081 20 H -0.264 1.264 21 H -0.255 1.255 22 H -0.222 1.222 23 C -0.045 4.045 24 H 0.032 0.968 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.181 0.819 32 H 0.179 0.821 33 H 0.138 0.862 34 H 0.279 0.721 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.671 -1.384 -26.443 26.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 H 0.087 0.913 4 C -0.161 4.161 5 C -0.042 4.042 6 N -0.380 5.380 7 C 0.373 3.627 8 O -0.475 6.475 9 C -0.159 4.159 10 C -0.092 4.092 11 C -0.140 4.140 12 C -0.081 4.081 13 C -0.228 4.228 14 S 0.119 5.881 15 C -0.673 4.673 16 H 0.062 0.938 17 C -0.162 4.162 18 N -0.557 5.557 19 Si 0.740 3.260 20 H -0.189 1.189 21 H -0.178 1.178 22 H -0.145 1.145 23 C -0.067 4.067 24 H 0.051 0.949 25 H 0.115 0.885 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.147 0.853 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.198 0.802 32 H 0.197 0.803 33 H 0.156 0.844 34 H 0.088 0.912 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.344 -0.502 -25.412 25.419 hybrid contribution -1.113 0.221 1.244 1.684 sum -0.769 -0.281 -24.167 24.181 Atomic orbital electron populations 1.21970 0.92486 1.04342 1.02109 1.22903 0.95345 0.96501 0.84408 0.91268 1.23459 1.03248 0.93404 0.95954 1.23695 1.04492 0.92173 0.83808 1.49873 1.60630 1.17361 1.10152 1.18029 0.77650 0.87139 0.79927 1.90734 1.59509 1.30728 1.66576 1.19925 1.04994 0.95202 0.95786 1.22346 0.96018 0.90018 1.00862 1.21617 0.97710 1.00872 0.93825 1.22124 0.95150 0.95409 0.95415 1.22037 1.05087 0.96666 0.99044 1.82574 1.20162 1.89774 0.95607 1.22370 0.96253 1.54173 0.94496 0.93754 1.25716 1.01419 0.92877 0.96233 1.70031 1.33065 1.46731 1.05893 0.85808 0.80064 0.79740 0.80428 1.18884 1.17848 1.14538 1.21614 0.93269 0.98286 0.93503 0.94885 0.88517 0.89894 0.88176 0.85330 0.87773 0.86780 0.80187 0.80330 0.84386 0.91192 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.79 71.98 0.70 -1.37 16 2 C 0.11 1.85 4.96 41.87 0.21 2.06 16 3 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 4 C -0.12 -0.91 8.08 31.01 0.25 -0.66 16 5 C 0.08 0.84 6.11 83.18 0.51 1.35 16 6 N -0.65 -15.06 3.49 -836.64 -2.92 -17.98 16 7 C 0.58 20.53 8.00 86.79 0.69 21.22 16 8 O -0.59 -26.89 17.15 -3.85 -0.07 -26.96 16 9 C -0.15 -5.42 5.87 -20.11 -0.12 -5.54 16 10 C -0.07 -1.87 9.18 22.57 0.21 -1.66 16 11 C -0.12 -3.05 10.02 22.21 0.22 -2.83 16 12 C -0.06 -2.13 9.79 22.48 0.22 -1.91 16 13 C -0.12 -5.22 5.45 22.65 0.12 -5.10 16 14 S -0.12 -5.92 19.38 -56.49 -1.09 -7.01 16 15 C -0.53 -32.31 10.01 67.94 0.68 -31.63 16 16 H 0.04 3.02 8.02 -2.91 -0.02 3.00 16 17 C 0.04 2.57 5.50 84.84 0.47 3.03 16 18 N -0.92 -57.79 13.97 21.63 0.30 -57.48 16 19 Si 0.92 44.42 27.74 68.60 1.90 46.32 16 20 H -0.26 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.25 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.22 -10.17 6.74 99.48 0.67 -9.50 16 23 C -0.04 -1.96 9.34 22.70 0.21 -1.75 16 24 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 0.80 7.05 -2.39 -0.02 0.78 16 27 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.13 0.12 8.11 -2.39 -0.02 0.10 16 29 H 0.10 0.82 6.16 -2.39 -0.01 0.80 16 30 H 0.11 0.74 7.32 -2.38 -0.02 0.72 16 31 H 0.18 2.71 3.86 -2.91 -0.01 2.70 16 32 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 34 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 35 H 0.11 5.23 7.67 -2.91 -0.02 5.21 16 Total: -1.00 -84.10 309.94 3.57 -80.53 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.06 Total: 7.36 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: 4.38 Total: -24.79 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -2.62 Total: -75.46 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.07 Total: -26.96 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -5.92 SS G_CDS: -1.09 Total: -7.01 kcal Total: -84.10 3.57 -80.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455483441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.946 kcal (2) G-P(sol) polarization free energy of solvation -84.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds