Wall clock time and date at job start Mon Mar 30 2020 02:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47529 * 263.93893 * 3 2 1 5 5 C 1.37093 * 120.00166 * 264.14255 * 4 3 2 6 6 H 1.08006 * 119.99961 * 197.43109 * 5 4 3 7 7 C 1.38955 * 120.00215 * 17.43193 * 5 4 3 8 8 N 1.31413 * 119.99567 * 21.53068 * 7 5 4 9 9 Si 1.86802 * 119.99958 * 201.53015 * 7 5 4 10 10 H 1.48496 * 109.47283 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46650 * 119.99931 * 9 7 5 12 12 H 1.48492 * 109.47054 * 239.99642 * 9 7 5 13 13 C 1.34778 * 119.99665 * 84.13871 * 4 3 2 14 14 O 1.21298 * 119.99677 * 180.02562 * 13 4 3 15 15 C 1.50694 * 119.99900 * 0.27629 * 13 4 3 16 16 C 1.50699 * 109.46929 * 179.72227 * 15 13 4 17 17 C 1.38258 * 119.94233 * 269.72659 * 16 15 13 18 18 C 1.38180 * 120.09801 * 179.76589 * 17 16 15 19 19 C 1.38660 * 119.97021 * 0.51011 * 18 17 16 20 20 O 1.35952 * 120.06589 * 179.72566 * 19 18 17 21 21 C 1.38909 * 119.87420 * 359.74337 * 19 18 17 22 22 F 1.35099 * 120.04992 * 179.97438 * 21 19 18 23 23 C 1.38259 * 119.93624 * 90.00362 * 16 15 13 24 24 H 4.40639 * 5.51482 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46538 * 143.94113 * 3 2 1 26 26 H 1.09004 * 109.47319 * 23.94610 * 3 2 1 27 27 H 0.96998 * 119.99218 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.47602 * 299.72105 * 15 13 4 29 29 H 1.09004 * 109.47378 * 59.72954 * 15 13 4 30 30 H 1.08006 * 119.94882 * 0.02562 * 17 16 15 31 31 H 1.08008 * 120.01572 * 180.25526 * 18 17 16 32 32 H 0.96704 * 113.99885 * 270.02229 * 20 19 18 33 33 H 1.08004 * 119.98571 * 359.95371 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1467 1.3734 5 6 3.4765 1.3853 1.8512 6 1 4.0890 1.4723 2.7366 7 6 3.0354 2.5288 1.1965 8 7 1.9840 2.4714 0.4103 9 14 3.9370 4.1475 1.4340 10 1 5.0788 3.9467 2.3619 11 1 4.4423 4.6295 0.1234 12 1 3.0061 5.1533 2.0059 13 6 3.2471 -0.9366 2.1673 14 8 3.6510 -0.8156 3.3046 15 6 2.8767 -2.2989 1.6401 16 6 3.0986 -3.3310 2.7154 17 6 4.3226 -3.9652 2.8213 18 6 4.5311 -4.9086 3.8092 19 6 3.5082 -5.2277 4.6892 20 8 3.7094 -6.1597 5.6583 21 6 2.2772 -4.5937 4.5785 22 9 1.2779 -4.9023 5.4337 23 6 2.0759 -3.6462 3.5908 24 1 -1.0500 0.0002 0.0000 25 1 3.0088 0.8317 -0.6050 26 1 3.0098 -0.9384 -0.4171 27 1 1.6763 3.2696 -0.0469 28 1 1.8274 -2.3014 1.3450 29 1 3.4977 -2.5353 0.7760 30 1 5.1183 -3.7197 2.1334 31 1 5.4891 -5.4002 3.8932 32 1 3.4914 -7.0621 5.3876 33 1 1.1194 -3.1522 3.5038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467389412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:44 Heat of formation + Delta-G solvation = -28.317144 kcal Electronic energy + Delta-G solvation = -20673.264119 eV Core-core repulsion = 17195.124454 eV Total energy + Delta-G solvation = -3478.139665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.72320 -39.66549 -38.56040 -36.82356 -35.14526 -32.35325 -31.48961 -31.20865 -30.47276 -27.22487 -26.32419 -24.38684 -22.84283 -21.79831 -19.16463 -18.55470 -17.93797 -16.77828 -16.64209 -16.52482 -16.19003 -15.83255 -15.01652 -14.63093 -14.47526 -14.16887 -13.87484 -13.77966 -13.24406 -12.84547 -12.68154 -12.29186 -12.17398 -11.74374 -11.56216 -11.41172 -11.25938 -11.01551 -10.54325 -10.50717 -10.32554 -9.42619 -9.31805 -8.95311 -8.80149 -8.57784 -8.24235 -7.90923 -6.37348 -3.89508 1.18657 1.31207 3.11075 3.24028 3.30479 3.54322 3.64793 3.85817 3.98720 4.02136 4.16691 4.41937 4.79859 4.89854 4.98840 5.07533 5.33506 5.40208 5.42011 5.66896 5.77091 5.83388 5.97516 6.08029 6.19968 6.24553 6.31381 6.67227 6.71179 6.84728 6.97675 7.53361 7.56843 8.00368 8.38175 8.75082 9.09650 9.31009 9.85557 10.63552 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.004531 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.341550 B = 6178.294556 C = 6596.543124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.115 4.115 3 C 0.230 3.770 4 N -0.440 5.440 5 C -0.314 4.314 6 H 0.105 0.895 7 C 0.031 3.969 8 N -0.862 5.862 9 Si 0.920 3.080 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.452 3.548 14 O -0.574 6.574 15 C -0.102 4.102 16 C -0.020 4.020 17 C -0.102 4.102 18 C -0.115 4.115 19 C 0.058 3.942 20 O -0.490 6.490 21 C 0.074 3.926 22 F -0.138 7.138 23 C -0.126 4.126 24 H 0.199 0.801 25 H 0.111 0.889 26 H 0.063 0.937 27 H 0.268 0.732 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.385 0.615 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.120 -13.360 -2.063 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.117 4.117 3 C 0.107 3.893 4 N -0.159 5.159 5 C -0.441 4.441 6 H 0.122 0.878 7 C -0.173 4.173 8 N -0.500 5.500 9 Si 0.746 3.254 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.241 3.759 14 O -0.458 6.458 15 C -0.142 4.142 16 C -0.020 4.020 17 C -0.120 4.120 18 C -0.134 4.134 19 C 0.013 3.987 20 O -0.299 6.299 21 C 0.055 3.945 22 F -0.116 7.116 23 C -0.145 4.145 24 H 0.216 0.784 25 H 0.128 0.872 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.240 0.760 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.396 -12.662 -1.241 12.799 hybrid contribution -0.467 0.622 -0.099 0.785 sum 0.929 -12.040 -1.340 12.150 Atomic orbital electron populations 1.24298 0.95402 1.06263 1.01828 1.23188 0.94372 0.95528 0.98622 1.18286 0.84274 1.00799 0.85945 1.43719 1.56027 1.06617 1.09505 1.19707 1.30129 0.80760 1.13550 0.87755 1.25287 0.95149 0.99500 0.97347 1.70096 1.19707 1.29979 1.30238 0.85968 0.79760 0.81438 0.78193 1.19192 1.20582 1.20897 1.19823 0.84807 0.85210 0.86098 1.90571 1.50598 1.86057 1.18560 1.20726 1.03774 0.92893 0.96790 1.19327 0.92784 0.94397 0.95509 1.20954 0.96720 0.95827 0.98523 1.21199 0.98675 0.99490 0.94028 1.18349 0.91966 0.95878 0.92529 1.84899 1.88858 1.18987 1.37123 1.18016 0.84982 1.00005 0.91544 1.91467 1.59426 1.92115 1.68623 1.20952 1.01321 0.97421 0.94841 0.78376 0.87153 0.91920 0.92175 0.88801 0.88896 0.84977 0.84655 0.75986 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.12 -2.46 10.89 -37.13 -0.40 -2.87 16 3 C 0.23 4.80 4.91 -6.83 -0.03 4.77 16 4 N -0.44 -10.64 2.60 -117.93 -0.31 -10.95 16 5 C -0.31 -8.43 9.33 -14.93 -0.14 -8.57 16 6 H 0.10 2.98 7.39 -52.48 -0.39 2.60 16 7 C 0.03 0.80 4.87 -17.47 -0.08 0.71 16 8 N -0.86 -22.11 9.48 55.50 0.53 -21.58 16 9 Si 0.92 20.13 29.60 -169.99 -5.03 15.10 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.45 10.46 7.56 -10.99 -0.08 10.37 16 14 O -0.57 -15.51 15.68 5.54 0.09 -15.42 16 15 C -0.10 -1.74 4.43 -29.04 -0.13 -1.87 16 16 C -0.02 -0.32 4.37 -104.61 -0.46 -0.78 16 17 C -0.10 -1.47 9.69 -39.60 -0.38 -1.85 16 18 C -0.12 -1.53 9.98 -39.45 -0.39 -1.93 16 19 C 0.06 0.84 6.71 -39.18 -0.26 0.58 16 20 O -0.49 -6.21 13.37 -19.59 -0.26 -6.47 16 21 C 0.07 1.19 7.31 -39.30 -0.29 0.91 16 22 F -0.14 -2.25 17.11 2.25 0.04 -2.21 16 23 C -0.13 -2.10 9.67 -39.54 -0.38 -2.48 16 24 H 0.20 3.21 7.80 -54.09 -0.42 2.78 16 25 H 0.11 2.45 6.44 -51.93 -0.33 2.11 16 26 H 0.06 1.04 6.68 -51.93 -0.35 0.69 16 27 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 28 H 0.09 1.53 7.46 -51.93 -0.39 1.15 16 29 H 0.09 1.30 7.35 -51.93 -0.38 0.92 16 30 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 31 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.39 2.76 9.06 45.56 0.41 3.18 16 33 H 0.14 2.20 8.06 -52.48 -0.42 1.77 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -32.72 302.81 -5.11 -37.83 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -2.25 Total: 6.72 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.47 Total: -7.58 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.22 Total: -32.53 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.18 Total: -21.89 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.72 -5.11 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467389412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.516 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds