Wall clock time and date at job start Mon Mar 30 2020 02:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47529 * 263.93893 * 3 2 1 5 5 C 1.37093 * 120.00166 * 264.14255 * 4 3 2 6 6 H 1.08006 * 119.99961 * 197.43109 * 5 4 3 7 7 C 1.38955 * 120.00215 * 17.43193 * 5 4 3 8 8 N 1.31413 * 119.99567 * 21.53068 * 7 5 4 9 9 Si 1.86802 * 119.99958 * 201.53015 * 7 5 4 10 10 H 1.48496 * 109.47283 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46650 * 119.99931 * 9 7 5 12 12 H 1.48492 * 109.47054 * 239.99642 * 9 7 5 13 13 C 1.34778 * 119.99665 * 84.13871 * 4 3 2 14 14 O 1.21298 * 119.99677 * 180.02562 * 13 4 3 15 15 C 1.50694 * 119.99900 * 0.27629 * 13 4 3 16 16 C 1.50699 * 109.46929 * 179.72227 * 15 13 4 17 17 C 1.38258 * 119.94233 * 269.72659 * 16 15 13 18 18 C 1.38180 * 120.09801 * 179.76589 * 17 16 15 19 19 C 1.38660 * 119.97021 * 0.51011 * 18 17 16 20 20 O 1.35952 * 120.06589 * 179.72566 * 19 18 17 21 21 C 1.38909 * 119.87420 * 359.74337 * 19 18 17 22 22 F 1.35099 * 120.04992 * 179.97438 * 21 19 18 23 23 C 1.38259 * 119.93624 * 90.00362 * 16 15 13 24 24 H 4.40639 * 5.51482 * 179.97438 * 4 1 2 25 25 H 1.09006 * 109.46538 * 143.94113 * 3 2 1 26 26 H 1.09004 * 109.47319 * 23.94610 * 3 2 1 27 27 H 0.96998 * 119.99218 * 180.02562 * 8 7 5 28 28 H 1.08995 * 109.47602 * 299.72105 * 15 13 4 29 29 H 1.09004 * 109.47378 * 59.72954 * 15 13 4 30 30 H 1.08006 * 119.94882 * 0.02562 * 17 16 15 31 31 H 1.08008 * 120.01572 * 180.25526 * 18 17 16 32 32 H 0.96704 * 113.99885 * 270.02229 * 20 19 18 33 33 H 1.08004 * 119.98571 * 359.95371 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1467 1.3734 5 6 3.4765 1.3853 1.8512 6 1 4.0890 1.4723 2.7366 7 6 3.0354 2.5288 1.1965 8 7 1.9840 2.4714 0.4103 9 14 3.9370 4.1475 1.4340 10 1 5.0788 3.9467 2.3619 11 1 4.4423 4.6295 0.1234 12 1 3.0061 5.1533 2.0059 13 6 3.2471 -0.9366 2.1673 14 8 3.6510 -0.8156 3.3046 15 6 2.8767 -2.2989 1.6401 16 6 3.0986 -3.3310 2.7154 17 6 4.3226 -3.9652 2.8213 18 6 4.5311 -4.9086 3.8092 19 6 3.5082 -5.2277 4.6892 20 8 3.7094 -6.1597 5.6583 21 6 2.2772 -4.5937 4.5785 22 9 1.2779 -4.9023 5.4337 23 6 2.0759 -3.6462 3.5908 24 1 -1.0500 0.0002 0.0000 25 1 3.0088 0.8317 -0.6050 26 1 3.0098 -0.9384 -0.4171 27 1 1.6763 3.2696 -0.0469 28 1 1.8274 -2.3014 1.3450 29 1 3.4977 -2.5353 0.7760 30 1 5.1183 -3.7197 2.1334 31 1 5.4891 -5.4002 3.8932 32 1 3.4914 -7.0621 5.3876 33 1 1.1194 -3.1522 3.5038 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467389412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:43 Heat of formation + Delta-G solvation = -49.746973 kcal Electronic energy + Delta-G solvation = -20674.193386 eV Core-core repulsion = 17195.124454 eV Total energy + Delta-G solvation = -3479.068932 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.94876 -40.99508 -40.06689 -37.98103 -36.94278 -34.11331 -33.01397 -32.76639 -31.62954 -28.72295 -27.90510 -26.14110 -23.98674 -23.06930 -20.81494 -19.67421 -19.60160 -18.40328 -18.04003 -17.80214 -17.73308 -17.02278 -16.45087 -16.23616 -16.00670 -15.84990 -15.10250 -14.92515 -14.60004 -14.34779 -14.27775 -13.95137 -13.52411 -13.45035 -12.84940 -12.80249 -12.72995 -12.52775 -12.38450 -12.11811 -11.60449 -11.16676 -11.07313 -10.62729 -10.35640 -9.91276 -9.80202 -9.48755 -8.30602 -5.90201 0.03917 0.16570 1.35696 1.43900 1.56412 1.91735 2.15589 2.34796 2.39120 2.46117 2.95966 3.06854 3.31237 3.32744 3.66015 3.81333 3.91630 4.17192 4.23006 4.27104 4.45824 4.59978 4.72089 4.86876 4.98081 5.01786 5.04876 5.17279 5.45421 5.49674 5.51661 5.76474 6.08877 6.47101 6.73515 7.16524 7.18357 7.45484 8.02244 8.67802 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.025745 B = 0.004531 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.341550 B = 6178.294556 C = 6596.543124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.153 4.153 3 C 0.231 3.769 4 N -0.453 5.453 5 C -0.349 4.349 6 H 0.073 0.927 7 C 0.004 3.996 8 N -0.872 5.872 9 Si 0.980 3.020 10 H -0.276 1.276 11 H -0.264 1.264 12 H -0.284 1.284 13 C 0.445 3.555 14 O -0.624 6.624 15 C -0.086 4.086 16 C -0.042 4.042 17 C -0.100 4.100 18 C -0.110 4.110 19 C 0.066 3.934 20 O -0.497 6.497 21 C 0.051 3.949 22 F -0.145 7.145 23 C -0.141 4.141 24 H 0.230 0.770 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.271 0.729 28 H 0.101 0.899 29 H 0.130 0.870 30 H 0.155 0.845 31 H 0.169 0.831 32 H 0.411 0.589 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.656 -14.425 -3.108 14.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.154 4.154 3 C 0.109 3.891 4 N -0.171 5.171 5 C -0.477 4.477 6 H 0.091 0.909 7 C -0.199 4.199 8 N -0.509 5.509 9 Si 0.804 3.196 10 H -0.201 1.201 11 H -0.188 1.188 12 H -0.210 1.210 13 C 0.235 3.765 14 O -0.510 6.510 15 C -0.126 4.126 16 C -0.043 4.043 17 C -0.118 4.118 18 C -0.128 4.128 19 C 0.020 3.980 20 O -0.310 6.310 21 C 0.031 3.969 22 F -0.124 7.124 23 C -0.160 4.160 24 H 0.246 0.754 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.148 0.852 30 H 0.173 0.827 31 H 0.187 0.813 32 H 0.270 0.730 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.909 -13.759 -2.327 14.084 hybrid contribution -0.666 0.886 0.282 1.144 sum 1.243 -12.873 -2.046 13.094 Atomic orbital electron populations 1.25134 0.96397 1.04934 1.00279 1.23509 0.95073 0.96811 1.00007 1.18393 0.84384 1.02282 0.84033 1.43916 1.56127 1.06124 1.10944 1.19551 1.31438 0.82896 1.13773 0.90949 1.25900 0.95433 1.01755 0.96832 1.70181 1.19849 1.30757 1.30122 0.85095 0.78264 0.77750 0.78494 1.20053 1.18832 1.20975 1.20816 0.83169 0.87049 0.85460 1.90528 1.52528 1.87195 1.20787 1.20622 1.04762 0.89187 0.98034 1.19384 0.93799 0.95167 0.95918 1.21279 0.96313 0.95219 0.98997 1.21534 0.99551 0.98827 0.92877 1.18482 0.91401 0.95750 0.92334 1.84830 1.88759 1.20444 1.36998 1.18241 0.85779 1.00951 0.91942 1.91437 1.59885 1.92241 1.68863 1.21011 1.01465 0.97986 0.95544 0.75352 0.88944 0.87565 0.91894 0.88083 0.85235 0.82730 0.81335 0.72994 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.47 19.25 74.32 1.43 -8.04 16 2 C -0.15 -6.35 10.89 31.12 0.34 -6.01 16 3 C 0.23 9.47 4.91 84.57 0.42 9.89 16 4 N -0.45 -22.12 2.60 -645.41 -1.68 -23.80 16 5 C -0.35 -19.25 9.33 84.04 0.78 -18.47 16 6 H 0.07 4.36 7.39 -2.91 -0.02 4.34 16 7 C 0.00 0.22 4.87 84.93 0.41 0.63 16 8 N -0.87 -44.52 9.48 21.66 0.21 -44.31 16 9 Si 0.98 41.57 29.60 68.60 2.03 43.60 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 C 0.44 20.71 7.56 87.65 0.66 21.37 16 14 O -0.62 -34.65 15.68 -3.09 -0.05 -34.69 16 15 C -0.09 -2.84 4.43 29.10 0.13 -2.71 16 16 C -0.04 -1.34 4.37 -19.85 -0.09 -1.43 16 17 C -0.10 -2.66 9.69 22.26 0.22 -2.44 16 18 C -0.11 -2.61 9.98 22.36 0.22 -2.39 16 19 C 0.07 1.79 6.71 22.53 0.15 1.94 16 20 O -0.50 -11.46 13.37 -93.01 -1.24 -12.70 16 21 C 0.05 1.61 7.31 22.45 0.16 1.77 16 22 F -0.15 -4.78 17.11 44.97 0.77 -4.01 16 23 C -0.14 -4.69 9.67 22.30 0.22 -4.48 16 24 H 0.23 6.81 7.80 -4.42 -0.03 6.77 16 25 H 0.09 4.08 6.44 -2.38 -0.02 4.07 16 26 H 0.11 3.29 6.68 -2.38 -0.02 3.28 16 27 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 28 H 0.10 3.17 7.46 -2.39 -0.02 3.16 16 29 H 0.13 3.23 7.35 -2.39 -0.02 3.21 16 30 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.41 4.77 9.06 -74.05 -0.67 4.10 16 33 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -72.47 302.81 5.58 -66.89 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.49 Total: 19.39 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 5.06 Total: -10.37 kcal Atomic # 7 Polarization: -66.64 SS G_CDS: -1.47 Total: -68.12 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -1.29 Total: -47.40 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.77 Total: -4.01 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -72.47 5.58 -66.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467389412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.148 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds