Wall clock time and date at job start Mon Mar 30 2020 02:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.50703 * 109.46963 * 240.00174 * 2 1 3 5 5 H 1.07995 * 120.00009 * 240.00155 * 4 2 1 6 6 C 1.37878 * 119.99689 * 59.99881 * 4 2 1 7 7 N 1.31508 * 120.00541 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47065 * 89.99938 * 8 6 4 10 10 H 1.48499 * 109.47012 * 209.99710 * 8 6 4 11 11 H 1.48500 * 109.46929 * 329.99952 * 8 6 4 12 12 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 13 13 C 1.34784 * 119.99864 * 274.99655 * 12 2 1 14 14 O 1.21655 * 119.99622 * 359.72406 * 13 12 2 15 15 C 1.47027 * 119.99985 * 179.72714 * 13 12 2 16 16 N 1.31521 * 126.23884 * 359.69186 * 15 13 12 17 17 N 1.28661 * 109.40642 * 179.82585 * 16 15 13 18 18 C 1.32269 * 109.29865 * 0.43943 * 17 16 15 19 19 C 1.46633 * 126.31878 * 179.72819 * 18 17 16 20 20 C 1.36579 * 125.98283 * 0.02562 * 19 18 17 21 21 C 1.40495 * 106.70923 * 179.97438 * 20 19 18 22 22 C 1.35043 * 107.10952 * 359.97438 * 21 20 19 23 23 O 1.34112 * 108.76275 * 359.73794 * 22 21 20 24 24 O 1.34688 * 107.37195 * 359.73569 * 18 17 16 25 25 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 27 27 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 28 28 H 0.96996 * 120.00555 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00740 * 94.72347 * 12 2 1 30 30 H 1.08005 * 126.64767 * 0.03118 * 20 19 18 31 31 H 1.08001 * 126.45074 * 179.97438 * 21 20 19 32 32 H 1.08003 * 125.61869 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1616 -4.4119 10 1 2.4863 -0.1413 -5.1124 11 1 3.6291 -1.7582 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8626 1.1633 2.4105 15 6 2.6315 -0.7129 3.5590 16 7 2.9670 -1.9819 3.6415 17 7 3.3483 -2.2461 4.8416 18 6 3.2615 -1.1514 5.5789 19 6 3.5974 -1.0335 7.0013 20 6 4.0578 -2.0387 7.8032 21 6 4.2461 -1.4830 9.0797 22 6 3.8976 -0.1806 9.0015 23 8 3.5128 0.0882 7.7452 24 8 2.8076 -0.1649 4.7821 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 0.7088 1.1615 -3.4843 29 1 2.2452 -1.6328 1.1536 30 1 4.2423 -3.0623 7.5121 31 1 4.6025 -2.0000 9.9584 32 1 3.9286 0.5288 9.8152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565695518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:46 Heat of formation + Delta-G solvation = 28.422990 kcal Electronic energy + Delta-G solvation = -20174.649674 eV Core-core repulsion = 16718.890408 eV Total energy + Delta-G solvation = -3455.759266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.24631 -43.02653 -39.09753 -36.46494 -35.04421 -33.78280 -32.84902 -32.30988 -29.95094 -28.62031 -25.43705 -25.15791 -24.31194 -22.22079 -21.64619 -21.43553 -19.98280 -18.94342 -18.20936 -17.69677 -16.64929 -16.42250 -16.03707 -15.87875 -15.25743 -14.52718 -14.31191 -13.67210 -13.44304 -13.38961 -13.11720 -12.66679 -12.56581 -12.21294 -11.90254 -11.56636 -11.21157 -11.05909 -10.89883 -10.76628 -10.45073 -10.33555 -10.31574 -9.84864 -9.18911 -8.76013 -8.67001 -8.23301 -6.20914 -4.30987 0.07250 1.22194 1.59277 1.88711 2.17518 2.37331 3.22710 3.28822 3.30172 3.32338 3.43653 4.12971 4.23512 4.40353 4.42856 4.55662 4.72511 4.92394 5.12328 5.30881 5.31869 5.34584 5.46985 5.88319 6.45992 6.67070 6.77141 6.95797 7.09737 7.30135 7.57266 7.72341 7.88846 7.99289 8.30612 8.48656 8.77012 9.36179 10.85271 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.047272 B = 0.003259 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.175421 B = 8589.699690 C = 8963.789886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 H 0.057 0.943 4 C -0.538 4.538 5 H 0.067 0.933 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.663 5.663 13 C 0.593 3.407 14 O -0.517 6.517 15 C 0.153 3.847 16 N -0.236 5.236 17 N -0.252 5.252 18 C 0.242 3.758 19 C 0.033 3.967 20 C -0.114 4.114 21 C -0.219 4.219 22 C 0.001 3.999 23 O -0.159 6.159 24 O -0.184 6.184 25 H 0.032 0.968 26 H 0.017 0.983 27 H 0.097 0.903 28 H 0.267 0.733 29 H 0.404 0.596 30 H 0.169 0.831 31 H 0.163 0.837 32 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.208 -4.584 20.637 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.576 4.576 5 H 0.085 0.915 6 C -0.135 4.135 7 N -0.520 5.520 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.313 5.313 13 C 0.370 3.630 14 O -0.392 6.392 15 C -0.058 4.058 16 N -0.090 5.090 17 N -0.105 5.105 18 C 0.037 3.963 19 C -0.018 4.018 20 C -0.135 4.135 21 C -0.238 4.238 22 C -0.069 4.069 23 O -0.053 6.053 24 O -0.060 6.060 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.115 0.885 28 H 0.077 0.923 29 H 0.239 0.761 30 H 0.186 0.814 31 H 0.181 0.819 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 4.990 -4.449 19.968 21.057 hybrid contribution 0.257 0.199 -0.257 0.415 sum 5.248 -4.249 19.711 20.836 Atomic orbital electron populations 1.22137 0.97601 0.99798 1.01416 1.19079 0.91581 0.94230 0.78669 0.92503 1.21167 1.33029 1.13620 0.89797 0.91518 1.24874 0.94647 0.94896 0.99115 1.69884 1.35603 1.22271 1.24215 0.86365 0.79298 0.79226 0.81774 1.20399 1.21017 1.19676 1.46469 1.62012 1.14473 1.08312 1.16057 0.80529 0.85990 0.80374 1.90895 1.50745 1.14139 1.83398 1.28081 1.01261 0.89836 0.86648 1.74868 1.11929 1.11252 1.10950 1.75158 1.17314 1.20922 0.97112 1.23873 0.98326 0.83110 0.91023 1.17775 1.11716 0.86491 0.85779 1.21946 0.99557 1.00070 0.91964 1.21874 1.08166 0.94798 0.98960 1.24515 0.99903 0.98167 0.84317 1.84152 1.66771 1.33987 1.20432 1.85087 1.62628 1.38989 1.19336 0.94856 0.96355 0.88495 0.92350 0.76081 0.81366 0.81925 0.76730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.28 16 2 C 0.26 6.54 2.56 -69.08 -0.18 6.37 16 3 H 0.06 1.59 7.57 -51.93 -0.39 1.19 16 4 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 5 H 0.07 1.65 7.74 -52.49 -0.41 1.25 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.13 11.32 55.43 0.63 -23.50 16 8 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 12 N -0.66 -14.03 5.06 -56.14 -0.28 -14.32 16 13 C 0.59 12.49 7.77 -12.69 -0.10 12.39 16 14 O -0.52 -12.46 16.77 0.78 0.01 -12.44 16 15 C 0.15 2.85 8.19 -14.12 -0.12 2.73 16 16 N -0.24 -4.15 11.92 31.99 0.38 -3.77 16 17 N -0.25 -4.06 12.27 31.93 0.39 -3.67 16 18 C 0.24 3.71 8.26 -13.98 -0.12 3.60 16 19 C 0.03 0.41 7.23 -36.80 -0.27 0.14 16 20 C -0.11 -1.04 10.83 -39.33 -0.43 -1.47 16 21 C -0.22 -1.43 10.88 -39.87 -0.43 -1.87 16 22 C 0.00 0.01 12.08 29.60 0.36 0.36 16 23 O -0.16 -1.78 10.67 4.69 0.05 -1.73 16 24 O -0.18 -3.28 10.92 -2.26 -0.02 -3.30 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 7.71 8.24 -40.82 -0.34 7.38 16 30 H 0.17 1.30 8.06 -52.48 -0.42 0.87 16 31 H 0.16 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.22 0.47 8.06 -52.48 -0.42 0.05 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -30.48 299.26 -3.38 -33.86 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -2.70 Total: 2.64 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.33 Total: 6.47 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 1.12 Total: -45.26 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.04 Total: -17.47 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.48 -3.38 -33.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.285 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds