Wall clock time and date at job start Mon Mar 30 2020 02:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46802 * 2 1 4 4 C 1.50703 * 109.46963 * 240.00174 * 2 1 3 5 5 H 1.07995 * 120.00009 * 240.00155 * 4 2 1 6 6 C 1.37878 * 119.99689 * 59.99881 * 4 2 1 7 7 N 1.31508 * 120.00541 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99577 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47065 * 89.99938 * 8 6 4 10 10 H 1.48499 * 109.47012 * 209.99710 * 8 6 4 11 11 H 1.48500 * 109.46929 * 329.99952 * 8 6 4 12 12 N 1.46493 * 109.47099 * 120.00372 * 2 1 3 13 13 C 1.34784 * 119.99864 * 274.99655 * 12 2 1 14 14 O 1.21655 * 119.99622 * 359.72406 * 13 12 2 15 15 C 1.47027 * 119.99985 * 179.72714 * 13 12 2 16 16 N 1.31521 * 126.23884 * 359.69186 * 15 13 12 17 17 N 1.28661 * 109.40642 * 179.82585 * 16 15 13 18 18 C 1.32269 * 109.29865 * 0.43943 * 17 16 15 19 19 C 1.46633 * 126.31878 * 179.72819 * 18 17 16 20 20 C 1.36579 * 125.98283 * 0.02562 * 19 18 17 21 21 C 1.40495 * 106.70923 * 179.97438 * 20 19 18 22 22 C 1.35043 * 107.10952 * 359.97438 * 21 20 19 23 23 O 1.34112 * 108.76275 * 359.73794 * 22 21 20 24 24 O 1.34688 * 107.37195 * 359.73569 * 18 17 16 25 25 H 1.09005 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47230 * 299.99882 * 1 2 3 27 27 H 1.09003 * 109.47308 * 59.99705 * 1 2 3 28 28 H 0.96996 * 120.00555 * 180.02562 * 7 6 4 29 29 H 0.97000 * 120.00740 * 94.72347 * 12 2 1 30 30 H 1.08005 * 126.64767 * 0.03118 * 20 19 18 31 31 H 1.08001 * 126.45074 * 179.97438 * 21 20 19 32 32 H 1.08003 * 125.61869 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3425 -2.1616 -4.4119 10 1 2.4863 -0.1413 -5.1124 11 1 3.6291 -1.7582 -3.7123 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8626 1.1633 2.4105 15 6 2.6315 -0.7129 3.5590 16 7 2.9670 -1.9819 3.6415 17 7 3.3483 -2.2461 4.8416 18 6 3.2615 -1.1514 5.5789 19 6 3.5974 -1.0335 7.0013 20 6 4.0578 -2.0387 7.8032 21 6 4.2461 -1.4830 9.0797 22 6 3.8976 -0.1806 9.0015 23 8 3.5128 0.0882 7.7452 24 8 2.8076 -0.1649 4.7821 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 0.7088 1.1615 -3.4843 29 1 2.2452 -1.6328 1.1536 30 1 4.2423 -3.0623 7.5121 31 1 4.6025 -2.0000 9.9584 32 1 3.9286 0.5288 9.8152 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565695518.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:46 Heat of formation + Delta-G solvation = 2.886403 kcal Electronic energy + Delta-G solvation = -20175.757024 eV Core-core repulsion = 16718.890408 eV Total energy + Delta-G solvation = -3456.866616 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.54672 -43.74667 -40.85401 -37.81437 -36.91316 -34.75974 -34.41815 -33.54378 -31.44049 -29.98326 -27.39263 -26.58803 -25.46103 -23.58874 -22.70835 -22.32438 -21.75319 -20.26447 -19.43868 -18.99061 -18.03983 -17.82078 -17.25619 -17.20272 -16.62576 -16.27283 -16.03735 -15.22993 -14.51566 -14.32567 -14.04247 -14.00934 -13.84270 -13.67373 -13.53616 -13.11592 -12.96508 -12.91065 -12.74498 -12.33406 -12.16437 -11.90981 -11.62651 -11.17837 -11.05817 -10.65575 -10.13274 -9.56196 -8.20658 -6.38261 -1.10820 0.06657 0.33677 1.02845 1.26285 1.47846 1.48413 1.56719 1.59184 1.66538 2.10935 2.41635 2.80777 3.10775 3.13480 3.53062 3.72228 3.80722 3.86832 4.02476 4.52742 4.67755 4.84595 4.84879 4.86383 4.97567 5.19210 5.34314 5.40701 5.59261 5.74691 5.79428 6.00011 6.37607 6.61358 6.66754 6.92176 7.33476 8.85960 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.047272 B = 0.003259 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.175421 B = 8589.699690 C = 8963.789886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.270 3.730 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.076 0.924 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.975 3.025 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.265 1.265 12 N -0.658 5.658 13 C 0.601 3.399 14 O -0.555 6.555 15 C 0.129 3.871 16 N -0.224 5.224 17 N -0.270 5.270 18 C 0.267 3.733 19 C -0.027 4.027 20 C -0.086 4.086 21 C -0.221 4.221 22 C 0.026 3.974 23 O -0.184 6.184 24 O -0.199 6.199 25 H 0.045 0.955 26 H 0.018 0.982 27 H 0.077 0.923 28 H 0.268 0.732 29 H 0.416 0.584 30 H 0.181 0.819 31 H 0.200 0.800 32 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.421 -6.180 23.053 24.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.169 3.831 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.094 0.906 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.799 3.201 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.308 5.308 13 C 0.381 3.619 14 O -0.433 6.433 15 C -0.082 4.082 16 N -0.079 5.079 17 N -0.122 5.122 18 C 0.063 3.937 19 C -0.077 4.077 20 C -0.107 4.107 21 C -0.239 4.239 22 C -0.043 4.043 23 O -0.080 6.080 24 O -0.077 6.077 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.252 0.748 30 H 0.199 0.801 31 H 0.217 0.783 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 6.216 -6.095 22.401 24.033 hybrid contribution -0.026 0.699 -0.628 0.940 sum 6.190 -5.396 21.773 23.270 Atomic orbital electron populations 1.21975 0.97178 1.00233 1.00434 1.18742 0.91894 0.92518 0.79952 0.96488 1.21469 1.33257 1.13945 0.90312 0.90598 1.25739 0.94695 0.95501 1.02115 1.70016 1.36579 1.23591 1.24952 0.85303 0.78984 0.78041 0.77783 1.19562 1.21064 1.18962 1.46151 1.62125 1.14804 1.07724 1.16075 0.79467 0.85434 0.80883 1.90862 1.52323 1.15797 1.84290 1.27131 1.04481 0.90066 0.86533 1.74796 1.10649 1.10515 1.11905 1.75121 1.19261 1.21155 0.96686 1.24555 0.95120 0.82019 0.92006 1.17825 1.16717 0.88220 0.84950 1.22391 0.95905 0.99925 0.92504 1.22340 1.07927 0.94761 0.98880 1.25649 0.95948 0.99354 0.83349 1.84152 1.67660 1.34098 1.22073 1.85067 1.63381 1.39912 1.19296 0.93567 0.96263 0.90470 0.92243 0.74757 0.80129 0.78252 0.72219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.90 9.26 71.98 0.67 -6.23 16 2 C 0.27 13.84 2.56 44.25 0.11 13.95 16 3 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 4 C -0.55 -28.82 8.73 25.60 0.22 -28.59 16 5 H 0.08 3.74 7.74 -2.91 -0.02 3.71 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -50.96 11.32 21.45 0.24 -50.72 16 8 Si 0.97 41.43 29.54 68.60 2.03 43.45 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 12 N -0.66 -28.68 5.06 -449.74 -2.28 -30.96 16 13 C 0.60 26.40 7.77 86.55 0.67 27.08 16 14 O -0.56 -28.15 16.77 0.05 0.00 -28.15 16 15 C 0.13 4.96 8.19 87.05 0.71 5.67 16 16 N -0.22 -7.95 11.92 -166.22 -1.98 -9.93 16 17 N -0.27 -8.67 12.27 -166.29 -2.04 -10.71 16 18 C 0.27 8.19 8.26 86.82 0.72 8.91 16 19 C -0.03 -0.62 7.23 24.07 0.17 -0.45 16 20 C -0.09 -1.33 10.83 22.43 0.24 -1.08 16 21 C -0.22 -1.89 10.88 22.08 0.24 -1.65 16 22 C 0.03 0.24 12.08 67.08 0.81 1.05 16 23 O -0.18 -3.76 10.67 -6.15 -0.07 -3.83 16 24 O -0.20 -7.30 10.92 -10.82 -0.12 -7.41 16 25 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 26 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.08 4.13 6.07 -2.39 -0.01 4.12 16 28 H 0.27 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.42 16.07 8.24 -92.71 -0.76 15.31 16 30 H 0.18 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.20 0.23 8.06 -2.91 -0.02 0.20 16 32 H 0.26 -0.34 8.06 -2.91 -0.02 -0.37 16 Total: -1.00 -68.72 299.26 1.23 -67.50 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.42 Total: 10.59 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 5.02 Total: 20.17 kcal Atomic # 7 Polarization: -96.26 SS G_CDS: -6.06 Total: -102.32 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -0.18 Total: -39.39 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -68.72 1.23 -67.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565695518.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.382 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds