Wall clock time and date at job start Mon Mar 30 2020 01:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99793 * 2 1 4 4 H 1.48500 * 109.46820 * 273.42760 * 3 2 1 5 5 H 1.48503 * 109.46854 * 33.42977 * 3 2 1 6 6 H 1.48497 * 109.47076 * 153.42791 * 3 2 1 7 7 C 1.38897 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99854 * 342.55557 * 7 2 1 9 9 N 1.37211 * 119.99650 * 162.55273 * 7 2 1 10 10 C 1.34778 * 119.99761 * 125.65938 * 9 7 2 11 11 O 1.21273 * 120.00224 * 184.42535 * 10 9 7 12 12 C 1.50697 * 119.99944 * 4.42132 * 10 9 7 13 13 H 1.08994 * 110.50862 * 329.65446 * 12 10 9 14 14 C 1.54097 * 110.56443 * 92.39620 * 12 10 9 15 15 O 1.46046 * 103.84505 * 118.53150 * 14 12 10 16 16 C 1.33771 * 109.50657 * 0.12096 * 15 14 12 17 17 O 1.21511 * 123.06587 * 179.97438 * 16 15 14 18 18 N 1.33997 * 113.86047 * 359.92054 * 16 15 14 19 19 C 1.39426 * 120.00396 * 305.65859 * 9 7 2 20 20 C 1.39063 * 119.69395 * 5.00074 * 19 9 7 21 21 C 1.38384 * 119.09676 * 179.97438 * 20 19 9 22 22 C 1.38821 * 118.49222 * 0.02562 * 21 20 19 23 23 C 1.38147 * 119.31689 * 359.97438 * 22 21 20 24 24 N 1.31888 * 120.84355 * 0.27485 * 23 22 21 25 25 H 0.96995 * 120.00289 * 359.97438 * 1 2 3 26 26 H 1.08994 * 110.52087 * 237.20583 * 14 12 10 27 27 H 1.09005 * 110.51977 * 359.94182 * 14 12 10 28 28 H 0.97008 * 125.56033 * 180.02562 * 18 16 15 29 29 H 1.08000 * 120.45710 * 359.97438 * 20 19 9 30 30 H 1.07996 * 120.75381 * 179.97438 * 21 20 19 31 31 H 1.08005 * 120.34353 * 179.97438 * 22 21 20 32 32 H 1.07994 * 119.58189 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4230 2.0883 -1.3976 5 1 1.4836 2.6307 0.7713 6 1 3.5800 1.4205 0.6263 7 6 2.0086 -1.2029 0.0005 8 1 1.5059 -2.1165 0.2813 9 7 3.3334 -1.2302 -0.3557 10 6 4.2438 -1.7737 0.4763 11 8 5.4234 -1.7264 0.1987 12 6 3.7961 -2.4400 1.7516 13 1 2.8849 -1.9739 2.1264 14 6 3.5790 -3.9490 1.5266 15 8 4.5391 -4.5786 2.4291 16 6 5.2182 -3.6335 3.0888 17 8 6.0816 -3.8857 3.9058 18 7 4.8602 -2.3834 2.7655 19 6 3.7377 -0.6959 -1.5784 20 6 2.8116 -0.0441 -2.3854 21 6 3.2264 0.4820 -3.5962 22 6 4.5583 0.3370 -3.9598 23 6 5.4238 -0.3225 -3.1087 24 7 4.9987 -0.8180 -1.9627 25 1 -0.4850 0.8400 0.0004 26 1 2.5603 -4.2321 1.7912 27 1 3.7942 -4.2158 0.4919 28 1 5.2410 -1.5731 3.1389 29 1 1.7825 0.0503 -2.0715 30 1 2.5297 0.9931 -4.2440 31 1 4.9143 0.7357 -4.8983 32 1 6.4608 -0.4382 -3.3874 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585109944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:12 Heat of formation + Delta-G solvation = -32.538663 kcal Electronic energy + Delta-G solvation = -21839.980312 eV Core-core repulsion = 18381.577550 eV Total energy + Delta-G solvation = -3458.402762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.46737 -40.17266 -38.30133 -36.79183 -35.50767 -34.30933 -32.66804 -31.68365 -30.32404 -28.95020 -25.65529 -24.64817 -22.83268 -22.19456 -22.07648 -19.79682 -18.75869 -17.78905 -17.43532 -16.42107 -16.15590 -15.84978 -15.59315 -15.00533 -14.73473 -14.40192 -14.08448 -13.92905 -13.73578 -13.49125 -13.18117 -12.94925 -12.55074 -12.52086 -12.01096 -11.68770 -11.35509 -10.77620 -10.59345 -10.45164 -10.44234 -9.96166 -9.83938 -9.41232 -9.07960 -8.89742 -8.35043 -7.47649 -6.89844 -4.80602 1.64519 1.88050 2.79479 2.89552 3.01073 3.02466 3.08745 3.18261 3.50444 3.80173 3.95848 4.32603 4.44447 4.67274 4.92906 5.12027 5.18258 5.31352 5.46068 5.60759 5.62341 5.76990 5.81537 5.91523 6.37134 6.53610 6.74547 6.94557 6.97942 7.26670 7.46732 7.65001 7.77092 8.30578 8.35469 8.54035 8.78956 9.21812 10.13556 Molecular weight = 277.09amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.007504 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.182662 B = 3730.650870 C = 4552.242878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.090 3.910 3 Si 0.858 3.142 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.383 4.383 8 H 0.115 0.885 9 N -0.401 5.401 10 C 0.485 3.515 11 O -0.496 6.496 12 C 0.086 3.914 13 H 0.142 0.858 14 C 0.063 3.937 15 O -0.330 6.330 16 C 0.653 3.347 17 O -0.535 6.535 18 N -0.711 5.711 19 C 0.354 3.646 20 C -0.195 4.195 21 C -0.063 4.063 22 C -0.227 4.227 23 C 0.116 3.884 24 N -0.489 5.489 25 H 0.284 0.716 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.436 0.564 29 H 0.154 0.846 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.514 0.786 -3.206 3.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.122 4.122 3 Si 0.682 3.318 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.509 4.509 8 H 0.132 0.868 9 N -0.115 5.115 10 C 0.271 3.729 11 O -0.369 6.369 12 C -0.023 4.023 13 H 0.160 0.840 14 C -0.012 4.012 15 O -0.240 6.240 16 C 0.406 3.594 17 O -0.421 6.421 18 N -0.383 5.383 19 C 0.125 3.875 20 C -0.218 4.218 21 C -0.089 4.089 22 C -0.249 4.249 23 C -0.042 4.042 24 N -0.204 5.204 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.124 0.876 28 H 0.279 0.721 29 H 0.171 0.829 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.886 -0.134 -2.306 2.982 hybrid contribution -0.434 2.030 -0.668 2.180 sum 1.452 1.896 -2.973 3.814 Atomic orbital electron populations 1.69718 1.06157 1.29213 1.41686 1.25468 0.95124 0.98841 0.92792 0.87235 0.81091 0.83188 0.80285 1.17795 1.20391 1.18678 1.19002 0.82698 0.96851 1.52315 0.86768 1.41431 1.08392 1.50841 1.10880 1.20804 0.86007 0.81318 0.84785 1.90744 1.16477 1.56278 1.73353 1.22296 0.93407 0.97320 0.89244 0.84045 1.24230 0.93607 0.88312 0.95088 1.87275 1.50488 1.32595 1.53627 1.18384 0.80571 0.80206 0.80287 1.91031 1.32186 1.83278 1.35582 1.45726 1.41359 1.08261 1.42910 1.19190 0.88879 0.92239 0.87177 1.21952 1.02421 1.01794 0.95662 1.21299 0.95683 0.96536 0.95354 1.21847 0.94915 1.06108 1.02018 1.22499 0.99422 0.93219 0.89094 1.67684 1.15039 1.21031 1.16691 0.90576 0.86200 0.87616 0.72130 0.82882 0.85545 0.85851 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.42 13.96 55.49 0.77 -18.64 16 2 C 0.09 2.02 3.76 -17.49 -0.07 1.96 16 3 Si 0.86 18.34 24.87 -169.99 -4.23 14.11 16 4 H -0.25 -5.30 6.14 56.52 0.35 -4.95 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.38 -8.31 7.59 -14.90 -0.11 -8.42 16 8 H 0.11 2.45 7.96 -52.49 -0.42 2.03 16 9 N -0.40 -8.72 2.10 -60.71 -0.13 -8.84 16 10 C 0.48 10.09 6.64 -10.99 -0.07 10.02 16 11 O -0.50 -11.69 14.99 5.56 0.08 -11.61 16 12 C 0.09 1.44 3.52 -68.19 -0.24 1.20 16 13 H 0.14 2.20 7.00 -51.93 -0.36 1.83 16 14 C 0.06 0.92 7.89 37.73 0.30 1.21 16 15 O -0.33 -5.67 11.10 -37.83 -0.42 -6.09 16 16 C 0.65 12.16 9.16 53.71 0.49 12.65 16 17 O -0.53 -11.46 18.04 -19.12 -0.34 -11.81 16 18 N -0.71 -11.86 5.73 -59.36 -0.34 -12.20 16 19 C 0.35 7.84 6.06 -154.64 -0.94 6.91 16 20 C -0.20 -3.98 6.08 -39.22 -0.24 -4.22 16 21 C -0.06 -1.07 10.16 -39.31 -0.40 -1.47 16 22 C -0.23 -3.58 10.11 -39.40 -0.40 -3.97 16 23 C 0.12 2.07 11.18 -17.56 -0.20 1.87 16 24 N -0.49 -10.69 7.92 -12.34 -0.10 -10.79 16 25 H 0.28 6.19 8.31 -40.82 -0.34 5.85 16 26 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.11 1.54 7.72 -51.93 -0.40 1.14 16 28 H 0.44 6.60 8.96 -40.82 -0.37 6.24 16 29 H 0.15 3.27 4.81 -52.49 -0.25 3.02 16 30 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 278.29 15.07 4.19 4.19 Total: -1.00 -29.79 278.29 -5.06 -34.85 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -2.68 Total: 9.11 kcal Atomic # 6 Polarization: 19.60 SS G_CDS: -1.87 Total: 17.73 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.21 Total: -50.48 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.68 Total: -29.51 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -4.23 Total: 14.11 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.79 -5.06 -34.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585109944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.308 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds